ISMth3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008553 ND Methanosaeta thermophila
Methanosaeta thermophila PT
DNA section
IS Length : 988 bp

Ends


IR Length : 17/18

IRL : TGCTGTGTTGGATAACTATTTAAACTAGGAAAATATATAATATATTTCAT
IRR : TGCTGTGTTGGATAAGTAGCTTTATATTCATATATTCTCTCTTATTCTTT

Insertion site


Left flankDirect repeatRight flankDR Length
GATGTTTTTGCATAGAGTTGATAGTAGG8

DNA sequence

TGCTGTGTTGGATAACTATTTAAACTAGGAAAATATATAATATATTTCATGGCCTATGAGGATAACCGCAATTGGCGCGAATACAATGAGAAATTGGTTA
GGCGAGGATGGTTTTACCTTAGCACTGACTTTGTGAATAATTGGGATGAAGAGCTACTGAAGATGAATAAGAACAAGAATGGCAGACCCTATCGCTATCC
TGAGACATTTATTCAATTTTGTGGTTTAGCATACGCCTTTCTTCATTTACCATACAGGCAGCTCGAAGGATTTATTCAGGCGCTAAGCGGATTTGTTCCT
GGGCTGTTGGCTGCCGATTATTCGACATTATGGCAGAGGATTACGAATTTGGAGTTGAATATTCCAATACCTGATAACGATTTAGTGGTCGCAGTTGACT
CAACAGGAATGAAGGTTACGAATAGAGGCGACTGGATGAGAGAAAGTCATGGTGTTGAACGCAGAGGCTGGATAAAAGTGCATATCGCCGTAGATGTTGA
AACAAGGAAGCCCGTAACCTTCGAGATAACCGATGAGACCGTCACTGATCATGAGATGGTAAAACCGCTGCTGGAAGATGTTAAGCTTGAAGATTCACTG
ATGGATGGAGCTTATGATAAGGAGGGGGTATTCGATTTCATGAAAGAGAAGGGCGTAGATATGCCTGGAATCAAGATCAGGAAGAATGCTATCGTCAAAG
CAGGCTCGTCCAGAGCCGAACCAGTTCTTGAGTTTATGAAGTATGGATACCACAGTTGGAAAATTGTGCATGGATATGGAAGAAGGTGGGCGGCTGAAAG
TGTATTCTCAGCAATTAAGAGGATATTTGGCGAGACTGTGAGGGCCACTTCGAAGGAAGGCATGATTCGCGAAGTACGCAGGATGTTCACATTTTATACT
ATAATTTTAAGCGTATAACATTATGACGAAGATTCTTGAAAGAATAAGAGAGAATATATGAATATAAAGCTACTTATCCAACACAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
870 bp289 aa49918+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAYEDNRNWREYNEKLVRRGWFYLSTDFVNNWDEELLKMNKNKNGRPYRYPETFIQFCGLAYAFLHLPYRQLEGFIQALSGFVPGLLAADYSTLWQRITN
LELNIPIPDNDLVVAVDSTGMKVTNRGDWMRESHGVERRGWIKVHIAVDVETRKPVTFEITDETVTDHEMVKPLLEDVKLEDSLMDGAYDKEGVFDFMKE
KGVDMPGIKIRKNAIVKAGSSRAEPVLEFMKYGYHSWKIVHGYGRRWAAESVFSAIKRIFGETVRATSKEGMIREVRRMFTFYTIILSV

 

Blast result :
Comments
ISMth3 is 53% aa similar to ISFac2.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Smith,K.S., Ingram-Smith,C. and Richardson,P. (2006) Direct submission GenBank.