ISDsh5

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009952 ND Dinoroseobacter shibae
Dinoroseobacter shibae DFL 12
DNA section
IS Length : 1049 bp

Ends


IR Length : 13/15

IRL : GGCGTTGTTGCGTAAAGTGCGTCAGGGATTCACTTCACGAATCCCGTAGG
IRR : GGCGTTGTTGCACAATTAGGCCTGAGGGAGAGTTCCCCCTATCCCCGGCG

Insertion site


Left flankDirect repeatRight flankDR Length
TGACTTTTGGCCGGGAAGGTATCATGCATA9

DNA sequence

GGCGTTGTTGCGTAAAGTGCGTCAGGGATTCACTTCACGAATCCCGTAGGTTAGATCGGCGGCATGCCGAAGCCCGCTCCTCCCCGCTATCGAACAACGA
ACTGGTCTGAGTACAACAAGGCGCTTCGGAGGAGGGGTTCGCTGCTGGTCTGGTTCGACCGCGACATGACGTGGCTGTCTGAACGGACCGGCAAGCGGGG
ACGACCGGACGTATTCTCCGATGCAGCGATCCAGTTCTGCCTGAGTGTGAAGGTGTTGTTTGGCCTGCCGCTTCGCCAAACCTCCGGTATGGTCGCGAGC
CTTTTGGAAATGGCTGACCTCGACTGGCCGGTGCCGGACTTCAGCACGTTGTGCCGGCGCCAAAGAACCTTGAACGTCCAGATCCCCTATCGCCGCGTGG
ATGGACCGCTGAACCTGCTTGTGGATAGCACAGGGATCAAGTTCTTGGGCGACGGAGAGTGGCAGGTTCGCAAGCATGGCACCAGCCGCCGACGTCAATG
GCGCAAGGTTCATCTGGCCATGGACACCACTACATCCGACATCCGAGCGGTGGAGTTCACGTCCAGTCGGGACGGCGACAGCCCCGTCTTGCCTGACCTT
CTGGAACAGATCCCCGAGGACGAACAGATCGGCACCGTGACAGCCGATGGTGCCTACGATACCCGCAGATGTCACGCCGCCATCATTGCCAGAGATGCCG
AAGCAATCATCCCGGTTCGCCGGAACGGACGATTGTGGAAGGAGGACGGTCCTGCCGCCAGGGTCCGCAACGAGATACTACGGGCCTCACAACGCTTCGG
CAGATCTCTCTGGAAGCGATGGAGCGGCTACCACGCCCGAAGCCGTGTCGAGGCCAAGATGCGATGCCTCAAATCATTCGGTGAACGCATTATGGCAAGA
GACCCCGACCGACAAACCGCAGAAATCCACATCCGCATCGCCCTCATGAACCGTTTCTCAGCCCTCGGAAAGGCTGACGTCGTTTGTGAAGCGTGAACCC
GCCGGGGATAGGGGGAACTCTCCCTCAGGCCTAATTGTGCAACAACGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa64996+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPKPAPPRYRTTNWSEYNKALRRRGSLLVWFDRDMTWLSERTGKRGRPDVFSDAAIQFCLSVKVLFGLPLRQTSGMVASLLEMADLDWPVPDFSTLCRRQ
RTLNVQIPYRRVDGPLNLLVDSTGIKFLGDGEWQVRKHGTSRRRQWRKVHLAMDTTTSDIRAVEFTSSRDGDSPVLPDLLEQIPEDEQIGTVTADGAYDT
RRCHAAIIARDAEAIIPVRRNGRLWKEDGPAARVRNEILRASQRFGRSLWKRWSGYHARSRVEAKMRCLKSFGERIMARDPDRQTAEIHIRIALMNRFSA
LGKADVVCEA

 

Blast result :
Comments
ISDsh5 is 89% aa similar to ISPpa4.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (2010) Direct submission GenBank