ISCte6
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAUJ02000001 | ND | Comamonas testosteroni | Comamonas testosteroni KF-1 |
DNA section
IS Length : 1033 bp
Ends
IR Length : 18
IRL : GGCGCTGTTGCATAAATCGTCACTTGCCGTCAGGTAGCCTTGCGTGATGA
IRR : GGCGCTGTTGCATAAATCAGCTCGGGGCCAGATTGCCCCTAACCCTAGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCATTAGC | ATTCGACACC | 0 |
DNA sequence
GGCGCTGTTGCATAAATCGTCACTTGCCGTCAGGTAGCCTTGCGTGATGAGTCAGCTACCGCATTCCAAGCCCCGCTACCGCACCACCAACTGGAAGCAG
TACAACGCTGCGCTCAAAGCGCGAGGCTCTCTGACTATTTGGCTGGACAAAGGTATGTCATGGTTTGCCGCTGCCAGCGGCAAACGCGGGCGCAGCCCGC
AGTTCTCGGATGCGGCCATCCAGTTTTGCCTGACCATCAAGAACCTGTTTGGCCTGGCTTTGCGGCAAACCACCGGTTTTGTGCAATCTCTACTGGCTTT
GTCTGGGTTGCCGTGGTTTGTTCCGGACTTCAGCACGCTGTGCCGTCGGCAGCGTAGCCTGGATGTAAAGGTGGCGTACCGACCCAGCCCGGGTGGGCTG
AATTTGCTGCTCGACTCCACGGGAATCAAGTTCCTGGGGGAAGGCGAATGGAAGTGCAAGAAGCATGGAGTAGAACGCCGACGTCAATGGCGCAAGCTGC
ACATCGGTATTGATGCTCAGACACTGCAGGTGCGAGCTATCTGCGTCACCTCCAACAACGTGACAGATGCTGCGGTCGTGCCGCAATTGTTGGCACAGTT
GCCGACAGATGAGCCGTTGCTGAGTGTCACAGGCGATGGTGCTTATGACACACAGCCTGTATACGCCGCGGTGATGGAGCGCAACGCCATGCCCATCATT
CCCCCGAGAAAAAATGCCCGGGTGCGCAAAGGCGCTGCCTTTGCGCACCGCAATGCGGCTATCGCCGCATGCCAGCGCTTCGGACGAAAGTTATGGAAAA
GCTGGAGTGGGTATCACCGCCGCAGTTTGGTGGAAACCAAGATGTACTGCATCAAGCGACTGGGCGAGCGGGTGATGTCCAGAACGTTCGAACGCCAAGT
CAATGAACTGCATGTCCGAGTTGCCATCCTGAATCGGTTCACTGAACTGGGCTGCCCGCAGACGGTGGCGGTGGCATAGCTGCGTCTAGGGTTAGGGGCA
ATCTGGCCCCGAGCTGATTTATGCAACAGCGCC
TACAACGCTGCGCTCAAAGCGCGAGGCTCTCTGACTATTTGGCTGGACAAAGGTATGTCATGGTTTGCCGCTGCCAGCGGCAAACGCGGGCGCAGCCCGC
AGTTCTCGGATGCGGCCATCCAGTTTTGCCTGACCATCAAGAACCTGTTTGGCCTGGCTTTGCGGCAAACCACCGGTTTTGTGCAATCTCTACTGGCTTT
GTCTGGGTTGCCGTGGTTTGTTCCGGACTTCAGCACGCTGTGCCGTCGGCAGCGTAGCCTGGATGTAAAGGTGGCGTACCGACCCAGCCCGGGTGGGCTG
AATTTGCTGCTCGACTCCACGGGAATCAAGTTCCTGGGGGAAGGCGAATGGAAGTGCAAGAAGCATGGAGTAGAACGCCGACGTCAATGGCGCAAGCTGC
ACATCGGTATTGATGCTCAGACACTGCAGGTGCGAGCTATCTGCGTCACCTCCAACAACGTGACAGATGCTGCGGTCGTGCCGCAATTGTTGGCACAGTT
GCCGACAGATGAGCCGTTGCTGAGTGTCACAGGCGATGGTGCTTATGACACACAGCCTGTATACGCCGCGGTGATGGAGCGCAACGCCATGCCCATCATT
CCCCCGAGAAAAAATGCCCGGGTGCGCAAAGGCGCTGCCTTTGCGCACCGCAATGCGGCTATCGCCGCATGCCAGCGCTTCGGACGAAAGTTATGGAAAA
GCTGGAGTGGGTATCACCGCCGCAGTTTGGTGGAAACCAAGATGTACTGCATCAAGCGACTGGGCGAGCGGGTGATGTCCAGAACGTTCGAACGCCAAGT
CAATGAACTGCATGTCCGAGTTGCCATCCTGAATCGGTTCACTGAACTGGGCTGCCCGCAGACGGTGGCGGTGGCATAGCTGCGTCTAGGGTTAGGGGCA
ATCTGGCCCCGAGCTGATTTATGCAACAGCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 47 | 979 | + | No |
Chemistry : DDE
ORF sequence :
MSQLPHSKPRYRTTNWKQYNAALKARGSLTIWLDKGMSWFAAASGKRGRSPQFSDAAIQFCLTIKNLFGLALRQTTGFVQSLLALSGLPWFVPDFSTLCR
RQRSLDVKVAYRPSPGGLNLLLDSTGIKFLGEGEWKCKKHGVERRRQWRKLHIGIDAQTLQVRAICVTSNNVTDAAVVPQLLAQLPTDEPLLSVTGDGAY
DTQPVYAAVMERNAMPIIPPRKNARVRKGAAFAHRNAAIAACQRFGRKLWKSWSGYHRRSLVETKMYCIKRLGERVMSRTFERQVNELHVRVAILNRFTE
LGCPQTVAVA
RQRSLDVKVAYRPSPGGLNLLLDSTGIKFLGEGEWKCKKHGVERRRQWRKLHIGIDAQTLQVRAICVTSNNVTDAAVVPQLLAQLPTDEPLLSVTGDGAY
DTQPVYAAVMERNAMPIIPPRKNARVRKGAAFAHRNAAIAACQRFGRKLWKSWSGYHRRSLVETKMYCIKRLGERVMSRTFERQVNELHVRVAILNRFTE
LGCPQTVAVA
Blast result :
Comments
ISCte6 is 80% aa similar to ISAav2.
References
1] ISfinder annotation (2010)
2] Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M. (2004) Appl. Environ. Microbiol. 70 (7), 4053-4063.
2] Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M. (2004) Appl. Environ. Microbiol. 70 (7), 4053-4063.