ISCte6

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAUJ02000001 ND Comamonas testosteroni
Comamonas testosteroni KF-1
DNA section
IS Length : 1033 bp

Ends


IR Length : 18

IRL : GGCGCTGTTGCATAAATCGTCACTTGCCGTCAGGTAGCCTTGCGTGATGA
IRR : GGCGCTGTTGCATAAATCAGCTCGGGGCCAGATTGCCCCTAACCCTAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GGCCATTAGCATTCGACACC0

DNA sequence

GGCGCTGTTGCATAAATCGTCACTTGCCGTCAGGTAGCCTTGCGTGATGAGTCAGCTACCGCATTCCAAGCCCCGCTACCGCACCACCAACTGGAAGCAG
TACAACGCTGCGCTCAAAGCGCGAGGCTCTCTGACTATTTGGCTGGACAAAGGTATGTCATGGTTTGCCGCTGCCAGCGGCAAACGCGGGCGCAGCCCGC
AGTTCTCGGATGCGGCCATCCAGTTTTGCCTGACCATCAAGAACCTGTTTGGCCTGGCTTTGCGGCAAACCACCGGTTTTGTGCAATCTCTACTGGCTTT
GTCTGGGTTGCCGTGGTTTGTTCCGGACTTCAGCACGCTGTGCCGTCGGCAGCGTAGCCTGGATGTAAAGGTGGCGTACCGACCCAGCCCGGGTGGGCTG
AATTTGCTGCTCGACTCCACGGGAATCAAGTTCCTGGGGGAAGGCGAATGGAAGTGCAAGAAGCATGGAGTAGAACGCCGACGTCAATGGCGCAAGCTGC
ACATCGGTATTGATGCTCAGACACTGCAGGTGCGAGCTATCTGCGTCACCTCCAACAACGTGACAGATGCTGCGGTCGTGCCGCAATTGTTGGCACAGTT
GCCGACAGATGAGCCGTTGCTGAGTGTCACAGGCGATGGTGCTTATGACACACAGCCTGTATACGCCGCGGTGATGGAGCGCAACGCCATGCCCATCATT
CCCCCGAGAAAAAATGCCCGGGTGCGCAAAGGCGCTGCCTTTGCGCACCGCAATGCGGCTATCGCCGCATGCCAGCGCTTCGGACGAAAGTTATGGAAAA
GCTGGAGTGGGTATCACCGCCGCAGTTTGGTGGAAACCAAGATGTACTGCATCAAGCGACTGGGCGAGCGGGTGATGTCCAGAACGTTCGAACGCCAAGT
CAATGAACTGCATGTCCGAGTTGCCATCCTGAATCGGTTCACTGAACTGGGCTGCCCGCAGACGGTGGCGGTGGCATAGCTGCGTCTAGGGTTAGGGGCA
ATCTGGCCCCGAGCTGATTTATGCAACAGCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa47979+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSQLPHSKPRYRTTNWKQYNAALKARGSLTIWLDKGMSWFAAASGKRGRSPQFSDAAIQFCLTIKNLFGLALRQTTGFVQSLLALSGLPWFVPDFSTLCR
RQRSLDVKVAYRPSPGGLNLLLDSTGIKFLGEGEWKCKKHGVERRRQWRKLHIGIDAQTLQVRAICVTSNNVTDAAVVPQLLAQLPTDEPLLSVTGDGAY
DTQPVYAAVMERNAMPIIPPRKNARVRKGAAFAHRNAAIAACQRFGRKLWKSWSGYHRRSLVETKMYCIKRLGERVMSRTFERQVNELHVRVAILNRFTE
LGCPQTVAVA

 

Blast result :
Comments
ISCte6 is 80% aa similar to ISAav2.
References
1] ISfinder annotation (2010)
2] Schleheck,D., Knepper,T.P., Fischer,K. and Cook,A.M. (2004) Appl. Environ. Microbiol. 70 (7), 4053-4063.