ISRhsp8
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009428 | ND | Rhodobacter sphaeroides | Rhodobacter sphaeroides ATCC 17025 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 16
IRL : GGCGTTGTTGCAGAACACTGAGCGTGAAGGATGCACATCACGAATTCATG
IRR : GGCGTTGTTGCAGAACTCAGGCCTGGGGCGTGACTGCCCCTTACCCCACG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGGTCCACGG | TCTCCACCCA | 0 |
DNA sequence
GGCGTTGTTGCAGAACACTGAGCGTGAAGGATGCACATCACGAATTCATGCGGTCAGACGGATGGGATGAGCAAGCCCAAGCCCGCGCGTTACCGCACGA
CGAACTGGTCCACCTACACCGCTGCGCTCCGCAAGCGCGGGTCGTTGCTGATCTGGCTGGACAAGGAGATGGCTTGGCACGCGCCGCATGAGGGCCGTCC
GGGGCGCCCGCTGGTCTTCTCAGATGCGGCGATCCCGTTCTGCTTGTCGATTAAGGTGTTGTTCAAGTTGCCGCTGCGGCAGACCGCCGGGATGGTGACG
AGCCTGCTACGCCTGGCGGGGCTGGACTGGCCTGTTCCGGACTATTCGACGCTGTGTCGCAGACAAAAGACCCTGAAGGTGCAGATCCCGTATCGCCGTG
CCGACGGACCGCTGAACCTGCTGGTGGACAGCACGGGTATCAAGTTCCTTGGTGACGGAAAATGGCAGGCCCGCAAGCATGGTGTTCAGGGACGGCGCCA
ATGGCGCAAGGTCCATCTGGCCATGGACACCGCCACATCCGACGTGCGCGCGGTCGAGTTCACGCCCAGTCGGGAAGGCGATAGCCCCGTCCTGCCAGAC
CTCCTTGACCAGATCCGGGTCGACGAAGCCATCGGCACCGTGACCGCGGACGGCGCCTATGATACCCCCCGCTGCCACAGCGCCATAATCGCACGGGGTG
GCACGGCTATCATTCCGATCCGCAAGAATGGCAGATTGTGGAAGGAGAATTGCCCCGCGGCTCGAGCCCGCAACGAAATCCTGCGCGCCACGCGTTACTA
CGGCCGGGCGTTGTGGAAACGGTGGACGGGATACCACGTCCGCAGCCGCGCCGAGGCCAGGATGCGCTGCCTCAAGTCCTTCGGCGAGCGCATCGCCGCG
AGAGACCTCGACCGCCAGGCAGCCGAAATCCACATCCGCATCGCCCTCATCAACCACTTCAACGCCCTCGGCACCGCCGAGATCGCCCGCGTGGCATGAG
CATCCGTGGGGTAAGGGGCAGTCACGCCCCAGGCCTGAGTTCTGCAACAACGCC
CGAACTGGTCCACCTACACCGCTGCGCTCCGCAAGCGCGGGTCGTTGCTGATCTGGCTGGACAAGGAGATGGCTTGGCACGCGCCGCATGAGGGCCGTCC
GGGGCGCCCGCTGGTCTTCTCAGATGCGGCGATCCCGTTCTGCTTGTCGATTAAGGTGTTGTTCAAGTTGCCGCTGCGGCAGACCGCCGGGATGGTGACG
AGCCTGCTACGCCTGGCGGGGCTGGACTGGCCTGTTCCGGACTATTCGACGCTGTGTCGCAGACAAAAGACCCTGAAGGTGCAGATCCCGTATCGCCGTG
CCGACGGACCGCTGAACCTGCTGGTGGACAGCACGGGTATCAAGTTCCTTGGTGACGGAAAATGGCAGGCCCGCAAGCATGGTGTTCAGGGACGGCGCCA
ATGGCGCAAGGTCCATCTGGCCATGGACACCGCCACATCCGACGTGCGCGCGGTCGAGTTCACGCCCAGTCGGGAAGGCGATAGCCCCGTCCTGCCAGAC
CTCCTTGACCAGATCCGGGTCGACGAAGCCATCGGCACCGTGACCGCGGACGGCGCCTATGATACCCCCCGCTGCCACAGCGCCATAATCGCACGGGGTG
GCACGGCTATCATTCCGATCCGCAAGAATGGCAGATTGTGGAAGGAGAATTGCCCCGCGGCTCGAGCCCGCAACGAAATCCTGCGCGCCACGCGTTACTA
CGGCCGGGCGTTGTGGAAACGGTGGACGGGATACCACGTCCGCAGCCGCGCCGAGGCCAGGATGCGCTGCCTCAAGTCCTTCGGCGAGCGCATCGCCGCG
AGAGACCTCGACCGCCAGGCAGCCGAAATCCACATCCGCATCGCCCTCATCAACCACTTCAACGCCCTCGGCACCGCCGAGATCGCCCGCGTGGCATGAG
CATCCGTGGGGTAAGGGGCAGTCACGCCCCAGGCCTGAGTTCTGCAACAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 933 bp | 310 aa | 67 | 999 | + | No |
Chemistry : DDE
ORF sequence :
MSKPKPARYRTTNWSTYTAALRKRGSLLIWLDKEMAWHAPHEGRPGRPLVFSDAAIPFCLSIKVLFKLPLRQTAGMVTSLLRLAGLDWPVPDYSTLCRRQ
KTLKVQIPYRRADGPLNLLVDSTGIKFLGDGKWQARKHGVQGRRQWRKVHLAMDTATSDVRAVEFTPSREGDSPVLPDLLDQIRVDEAIGTVTADGAYDT
PRCHSAIIARGGTAIIPIRKNGRLWKENCPAARARNEILRATRYYGRALWKRWTGYHVRSRAEARMRCLKSFGERIAARDLDRQAAEIHIRIALINHFNA
LGTAEIARVA
KTLKVQIPYRRADGPLNLLVDSTGIKFLGDGKWQARKHGVQGRRQWRKVHLAMDTATSDVRAVEFTPSREGDSPVLPDLLDQIRVDEAIGTVTADGAYDT
PRCHSAIIARGGTAIIPIRKNGRLWKENCPAARARNEILRATRYYGRALWKRWTGYHVRSRAEARMRCLKSFGERIAARDLDRQAAEIHIRIALINHFNA
LGTAEIARVA
Blast result :
Comments
ISRhsp8 is 92% aa similar to ISRhba5.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S.(2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Richardson,P., Mackenzie,C., Choudhary,M., Donohue,T.J. and Kaplan,S.(2007) Direct submission GenBank.