ISBvi6
- Family IS5
- Group IS903
Isoform Synonym(s) ISBmu17
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009254 | ND | Burkholderia vietnamiensis | Burkholderia multivorans ATCC 17616 Burkholderia vietnamiensis G4 chromosome 3 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 15/17
IRL : GGCTTTGTTGCGCAAATGGTCGCGGCCCGATGGTAGGCTTGCCGCATGAC
IRR : GGCTCTGTTGCGTAAATCAGCTCGGGGCGAAACTACCCCAAACCCCAGAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTGTGTCGGGC | GCGATGAAAC | 0 |
DNA sequence
GGCTTTGTTGCGCAAATGGTCGCGGCCCGATGGTAGGCTTGCCGCATGACTCTCAAGAAGAAGACGCCGGTGCGCTACCGCACGACGAACTGGTCGCAGT
ACAACGCTGCGCTGAAGGCGCGGGGCTCCCTGGGGATCTGGCTTGACCCGGGCATGCAGTGGCTGGCGGCGGCCAGCGGCAGACGGGGGCGTCAGCAGCG
GTATTCGGATGCCGCGATTCAATTCTGTCTCAGCGTCAAATATCTGTTCAACCTGGCTTTGCGCCAGGCGTTGGGTCTGGTGGAGAGCCTGCTCAAGCTG
GCGGGGCTAGACTGGCCGGTGCCGGACTTCAGTACGGTATGCCGTCGTCAGCGCAACCTGCAAGCGCAACTGAGCTATCAGCCGCGGCATGGCGGACTGG
ATCTGCTGGTCGACAGTACGGGCGTGAAGTTCCTGGGCGAAGGCGAATGGAAGACCCAGAAACACGGCGCCGACTACCGCCGCCAGTGGCGTAAGGTGCA
TCTGGCCGTCGATGCGAATACCCTGGAGATTCGCGGTATCGAGGTCACCAGCAATGCGGTGGGCGATGCCCCGATGCTGCCCGAGTTGCTCAAACAAATT
CCGGCCGACGAACCGATAGCGAGTGTCAGCGGTGACGGCGCCTACGATACCAAACTCTGCCATGCCGCAATAGCGGCGCGCGGTGCCCAGGCGATTATCC
CGCCTCGTCGCAACGCCCAATTCTGGAAACCGGGGCGTGCCGGGGCAGCGGCCCGAAACGAGGCGCTGCGAGCCTGCCAATATCTCGGGCGCAGGCTGTG
GAAGCGCTGGAGCCGATATCATCGCCGAAGCTTGGTGGAAACGAAAATGCACTGCTTCAAACGCCTGGGGGATCGCGTGGCTGCCCGCACGTTTGAACGC
CAAGTGGTCGAGTTGCAGATCCGTGCGGCGTTGCTCAACCGCTTCAGCCAGCTCGGCCGGCCGAATACGGTCGCTGCGGCAGCTATGGCATAAGTCCGTC
TGGGGTTTGGGGTAGTTTCGCCCCGAGCTGATTTACGCAACAGAGCC
ACAACGCTGCGCTGAAGGCGCGGGGCTCCCTGGGGATCTGGCTTGACCCGGGCATGCAGTGGCTGGCGGCGGCCAGCGGCAGACGGGGGCGTCAGCAGCG
GTATTCGGATGCCGCGATTCAATTCTGTCTCAGCGTCAAATATCTGTTCAACCTGGCTTTGCGCCAGGCGTTGGGTCTGGTGGAGAGCCTGCTCAAGCTG
GCGGGGCTAGACTGGCCGGTGCCGGACTTCAGTACGGTATGCCGTCGTCAGCGCAACCTGCAAGCGCAACTGAGCTATCAGCCGCGGCATGGCGGACTGG
ATCTGCTGGTCGACAGTACGGGCGTGAAGTTCCTGGGCGAAGGCGAATGGAAGACCCAGAAACACGGCGCCGACTACCGCCGCCAGTGGCGTAAGGTGCA
TCTGGCCGTCGATGCGAATACCCTGGAGATTCGCGGTATCGAGGTCACCAGCAATGCGGTGGGCGATGCCCCGATGCTGCCCGAGTTGCTCAAACAAATT
CCGGCCGACGAACCGATAGCGAGTGTCAGCGGTGACGGCGCCTACGATACCAAACTCTGCCATGCCGCAATAGCGGCGCGCGGTGCCCAGGCGATTATCC
CGCCTCGTCGCAACGCCCAATTCTGGAAACCGGGGCGTGCCGGGGCAGCGGCCCGAAACGAGGCGCTGCGAGCCTGCCAATATCTCGGGCGCAGGCTGTG
GAAGCGCTGGAGCCGATATCATCGCCGAAGCTTGGTGGAAACGAAAATGCACTGCTTCAAACGCCTGGGGGATCGCGTGGCTGCCCGCACGTTTGAACGC
CAAGTGGTCGAGTTGCAGATCCGTGCGGCGTTGCTCAACCGCTTCAGCCAGCTCGGCCGGCCGAATACGGTCGCTGCGGCAGCTATGGCATAAGTCCGTC
TGGGGTTTGGGGTAGTTTCGCCCCGAGCTGATTTACGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 948 bp | 315 aa | 46 | 993 | + | No |
Chemistry : DDE
ORF sequence :
MTLKKKTPVRYRTTNWSQYNAALKARGSLGIWLDPGMQWLAAASGRRGRQQRYSDAAIQFCLSVKYLFNLALRQALGLVESLLKLAGLDWPVPDFSTVCR
RQRNLQAQLSYQPRHGGLDLLVDSTGVKFLGEGEWKTQKHGADYRRQWRKVHLAVDANTLEIRGIEVTSNAVGDAPMLPELLKQIPADEPIASVSGDGAY
DTKLCHAAIAARGAQAIIPPRRNAQFWKPGRAGAAARNEALRACQYLGRRLWKRWSRYHRRSLVETKMHCFKRLGDRVAARTFERQVVELQIRAALLNRF
SQLGRPNTVAAAAMA
RQRNLQAQLSYQPRHGGLDLLVDSTGVKFLGEGEWKTQKHGADYRRQWRKVHLAVDANTLEIRGIEVTSNAVGDAPMLPELLKQIPADEPIASVSGDGAY
DTKLCHAAIAARGAQAIIPPRRNAQFWKPGRAGAAARNEALRACQYLGRRLWKRWSRYHRRSLVETKMHCFKRLGDRVAARTFERQVVELQIRAALLNRF
SQLGRPNTVAAAAMA
Blast result :
Comments
ISBvi6 is 81% aa similar to ISGNB1-1.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Tiedje,J. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Tiedje,J. and Richardson,P. (2007) Direct submission GenBank.