ISRhba5
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAMT01000013 | ND | Rhodobacterales bacterium | Rhodobacterales bacterium HTCC2654 Pelagibaca bermudensis HTCC2601 Maritimibacter alkaliphilus HTCC2654 |
DNA section
IS Length : 1053 bp
Ends
IR Length : 15
IRL : GGCGTTGTTGCAGAACTCAGTCGGTGAAGGATTCACATCGGGAATCCATG
IRR : GGCGTTGTTGCAGAAAGTCGGCCTGAGTTGTGAGTGCCCCTTTCCCATTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGATGCACTG | CATCGCGCCC | 0 |
DNA sequence
GGCGTTGTTGCAGAACTCAGTCGGTGAAGGATTCACATCGGGAATCCATGCGGTTAGACGATCTGCATGAGCAAGCCCAAGCCCGCCCGCTACCGCACGA
CGAACTGGTCCAGCTACAACGATGCGCTCAGGAAGCGCGGATCGCTGCTGATCTGGCTGGACAAGGAGATGACCTGGCACGCGCCGCATGAGGGACGCCC
AGGGCGCCCGCCGGTCTTTTCGAATGCCGCGATCCAGTTTTGCCTGTCGCTCAAGGTTCTGTTCAAGCTACCGCTCAGGCAGACAGCCGGAATGGTCGCG
AGCCTCCTGCGCCTGGCAGGGCTAGACTGGCCCGTTCCGGACTACTCGACGCTGTGCCGCAGACAGAAGACCCTCAAGGTGCAGATCCCCTATCGCCGTG
CCGAAGGGCCGCTGAATCTTCTGGTGGACAGCACCGGCATCAAGTTTCTTGGCGACGGCGAATGGCAGGCCCGCAAGCATGGCGTTCAGGGCCGCCGCCA
ATGGCGCAAGGTGCATCTGGCGATGGATATCGCCACCTCGGATATCCGGGCCGTCGAGTTCACCCCTAGCCGGGAAGGCGACAGCCCAGTCCTGCCGGAC
CTGTTGGGCCAGATCCCCGAGGACGAGGACATCGGCACCGTGACCGCGGATGGTGCCTACGATACCCGCCGCTGCCACGGCGCCGTCATCGCACGCGGTG
GCACGGCAATCATACCGACCCGAAGGAACGGTCGAGCTTGGAAAGAGGACTGCCCGGCTGCCAAGGCGCGCAACGAAACCCTGCGCGCCACGCGTCACTA
CGGTCGGGCATTCTGGAAGCGGTGGACCGGATACCACGCCCGTAGCCGAGTGGAGGCCAAGATGCGATGCCTGAAGGCCTTCGGTGAGCGCATCGCCGCG
CGGGATCCAGATCGCCAAACCGCCGAAATCCACATCCGGGTCGCCCTTGTCAATCGCTTCAACGCGCTCGGCACCGCCCACGTCGTCCGCGTGGCATGAA
ACTGAATGGGAAAGGGGCACTCACAACTCAGGCCGACTTTCTGCAACAACGCC
CGAACTGGTCCAGCTACAACGATGCGCTCAGGAAGCGCGGATCGCTGCTGATCTGGCTGGACAAGGAGATGACCTGGCACGCGCCGCATGAGGGACGCCC
AGGGCGCCCGCCGGTCTTTTCGAATGCCGCGATCCAGTTTTGCCTGTCGCTCAAGGTTCTGTTCAAGCTACCGCTCAGGCAGACAGCCGGAATGGTCGCG
AGCCTCCTGCGCCTGGCAGGGCTAGACTGGCCCGTTCCGGACTACTCGACGCTGTGCCGCAGACAGAAGACCCTCAAGGTGCAGATCCCCTATCGCCGTG
CCGAAGGGCCGCTGAATCTTCTGGTGGACAGCACCGGCATCAAGTTTCTTGGCGACGGCGAATGGCAGGCCCGCAAGCATGGCGTTCAGGGCCGCCGCCA
ATGGCGCAAGGTGCATCTGGCGATGGATATCGCCACCTCGGATATCCGGGCCGTCGAGTTCACCCCTAGCCGGGAAGGCGACAGCCCAGTCCTGCCGGAC
CTGTTGGGCCAGATCCCCGAGGACGAGGACATCGGCACCGTGACCGCGGATGGTGCCTACGATACCCGCCGCTGCCACGGCGCCGTCATCGCACGCGGTG
GCACGGCAATCATACCGACCCGAAGGAACGGTCGAGCTTGGAAAGAGGACTGCCCGGCTGCCAAGGCGCGCAACGAAACCCTGCGCGCCACGCGTCACTA
CGGTCGGGCATTCTGGAAGCGGTGGACCGGATACCACGCCCGTAGCCGAGTGGAGGCCAAGATGCGATGCCTGAAGGCCTTCGGTGAGCGCATCGCCGCG
CGGGATCCAGATCGCCAAACCGCCGAAATCCACATCCGGGTCGCCCTTGTCAATCGCTTCAACGCGCTCGGCACCGCCCACGTCGTCCGCGTGGCATGAA
ACTGAATGGGAAAGGGGCACTCACAACTCAGGCCGACTTTCTGCAACAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 933 bp | 310 aa | 67 | 999 | + | No |
Chemistry : DDE
ORF sequence :
MSKPKPARYRTTNWSSYNDALRKRGSLLIWLDKEMTWHAPHEGRPGRPPVFSNAAIQFCLSLKVLFKLPLRQTAGMVASLLRLAGLDWPVPDYSTLCRRQ
KTLKVQIPYRRAEGPLNLLVDSTGIKFLGDGEWQARKHGVQGRRQWRKVHLAMDIATSDIRAVEFTPSREGDSPVLPDLLGQIPEDEDIGTVTADGAYDT
RRCHGAVIARGGTAIIPTRRNGRAWKEDCPAAKARNETLRATRHYGRAFWKRWTGYHARSRVEAKMRCLKAFGERIAARDPDRQTAEIHIRVALVNRFNA
LGTAHVVRVA
KTLKVQIPYRRAEGPLNLLVDSTGIKFLGDGEWQARKHGVQGRRQWRKVHLAMDIATSDIRAVEFTPSREGDSPVLPDLLGQIPEDEDIGTVTADGAYDT
RRCHGAVIARGGTAIIPTRRNGRAWKEDCPAAKARNETLRATRHYGRAFWKRWTGYHARSRVEAKMRCLKAFGERIAARDPDRQTAEIHIRVALVNRFNA
LGTAHVVRVA
Blast result :
Comments
References
1] ISfinder annotation (2010)
2] Giovannoni,S.J., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Giovannoni,S.J., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.