ISUnCu15
- Family IS5
- Group IS903
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| AB266118 | ND | uncultured bacterium | uncultured bacterium |
DNA section
IS Length : 1053 bp
Ends
IR Length : 15/17
IRL : GGCGTTGTTGCACAACTTTGACCAGCTAGGATTCACATTGTGAATCCATG
IRR : GGCGTTGTTGCGTAACTCACGCTTGAGGCGTGACTTCCCCTTTTCTCTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCGGCGACGACGAGG | TCATCAGAACCC | 0 |
DNA sequence
GGCGTTGTTGCACAACTTTGACCAGCTAGGATTCACATTGTGAATCCATGCGGTTAGACGGAGCGCATGAGCAAGCCATCCCCCGCCCGTTACCGCACGA
CGAACTGGTCCAGCTACACTGCTTCGCTGCGCAAGCGCGGGTCCCTGTTGATATGGTTGGACAAGGAGCTGACCTGGTTCGCGCCGCCTGACGGCAGCCC
CGGTCGCCCTTCGGTGTTCTCGGATGCAGCAATCCAGTTCTGCCTGACGATCAAGGTGCTGTTCAAGCTGCCGCTCAGGCAAACGACCGGGATGGTGGCC
AGCTTGCTGAAGATGGCAGGCCTGGACTGGGCCGTGCCGGATTACACGACCCTGTGCCGGCGTCAAAAGACCTTGGCCGTTCAGATCCCCTATCGACGCG
TCGATGGCCCGCTGAACCTGCTGGTGGACAGCACCGGGATCAAGTTCCTTGGTGATGGCGAATGGCAGGCGCGCAAGCATGGTGTTCAGGGCCGCCGCCA
ATGGCGCAAGGTGCATCTGGCCATGGACACGGCCACGTCGGACATTCGCGCGGTGGAGTTTATCCCCAGCAGCGACGGTGACAGCCCGGTGCTTCCGGAG
TTGCTGGACCAGATCCCTGACGACGAAGAGATCGGCACGGTGACTGCCGACGGCGCCTATGACACGCGCCGATGCCACACCGCCATCATCGACCGGCAGG
CCACCGCGATCATCCCGATCCGCAAGAATGGGCGACCGTGGAAAGAGGACTGCCCGGCCGCGATTGCCAGAAACGAAACCCTGCGCGCGACCCGGCACTA
CGGCAGGGCGTTCTGGAAGCGCTGGACAGGATACCACGCCCGGAGCCGGATCGAGGCGAAGATGCGGTGCCTCAAGGCCTTCGGCGAACGTATCGCTGCA
AGACACCCCGACAGCCAAACCGCCGAAATCCAGATCCGCGTCTCCCTCATCAACCGCTTCAACGCACTCGGCACCGCCGACATCGTCCGCATGGCCTGAC
ATCAAAGAGAAAAGGGGAAGTCACGCCTCAAGCGTGAGTTACGCAACAACGCC
CGAACTGGTCCAGCTACACTGCTTCGCTGCGCAAGCGCGGGTCCCTGTTGATATGGTTGGACAAGGAGCTGACCTGGTTCGCGCCGCCTGACGGCAGCCC
CGGTCGCCCTTCGGTGTTCTCGGATGCAGCAATCCAGTTCTGCCTGACGATCAAGGTGCTGTTCAAGCTGCCGCTCAGGCAAACGACCGGGATGGTGGCC
AGCTTGCTGAAGATGGCAGGCCTGGACTGGGCCGTGCCGGATTACACGACCCTGTGCCGGCGTCAAAAGACCTTGGCCGTTCAGATCCCCTATCGACGCG
TCGATGGCCCGCTGAACCTGCTGGTGGACAGCACCGGGATCAAGTTCCTTGGTGATGGCGAATGGCAGGCGCGCAAGCATGGTGTTCAGGGCCGCCGCCA
ATGGCGCAAGGTGCATCTGGCCATGGACACGGCCACGTCGGACATTCGCGCGGTGGAGTTTATCCCCAGCAGCGACGGTGACAGCCCGGTGCTTCCGGAG
TTGCTGGACCAGATCCCTGACGACGAAGAGATCGGCACGGTGACTGCCGACGGCGCCTATGACACGCGCCGATGCCACACCGCCATCATCGACCGGCAGG
CCACCGCGATCATCCCGATCCGCAAGAATGGGCGACCGTGGAAAGAGGACTGCCCGGCCGCGATTGCCAGAAACGAAACCCTGCGCGCGACCCGGCACTA
CGGCAGGGCGTTCTGGAAGCGCTGGACAGGATACCACGCCCGGAGCCGGATCGAGGCGAAGATGCGGTGCCTCAAGGCCTTCGGCGAACGTATCGCTGCA
AGACACCCCGACAGCCAAACCGCCGAAATCCAGATCCGCGTCTCCCTCATCAACCGCTTCAACGCACTCGGCACCGCCGACATCGTCCGCATGGCCTGAC
ATCAAAGAGAAAAGGGGAAGTCACGCCTCAAGCGTGAGTTACGCAACAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 933 bp | 310 aa | 67 | 999 | + | No |
Chemistry : DDE
ORF sequence :
MSKPSPARYRTTNWSSYTASLRKRGSLLIWLDKELTWFAPPDGSPGRPSVFSDAAIQFCLTIKVLFKLPLRQTTGMVASLLKMAGLDWAVPDYTTLCRRQ
KTLAVQIPYRRVDGPLNLLVDSTGIKFLGDGEWQARKHGVQGRRQWRKVHLAMDTATSDIRAVEFIPSSDGDSPVLPELLDQIPDDEEIGTVTADGAYDT
RRCHTAIIDRQATAIIPIRKNGRPWKEDCPAAIARNETLRATRHYGRAFWKRWTGYHARSRIEAKMRCLKAFGERIAARHPDSQTAEIQIRVSLINRFNA
LGTADIVRMA
KTLAVQIPYRRVDGPLNLLVDSTGIKFLGDGEWQARKHGVQGRRQWRKVHLAMDTATSDIRAVEFIPSSDGDSPVLPELLDQIPDDEEIGTVTADGAYDT
RRCHTAIIDRQATAIIPIRKNGRPWKEDCPAAIARNETLRATRHYGRAFWKRWTGYHARSRIEAKMRCLKAFGERIAARHPDSQTAEIQIRVSLINRFNA
LGTADIVRMA
Blast result :
Comments
ISUnCu15 is 92% aa similar to ISPpa4.
References
1] ISfinder annotation (2010)
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2009) Environ. Microbiol. 9 (9), 2289-2297
3] Suenaga,H., Koyama,Y., Miyakoshi,M., Miyazaki,R., Yano,H., Sota,M., Ohtsubo,Y., Tsuda,M. and Miyazaki,K. (2009) ISME J 3 (12), 1335-1348
2] Suenaga,H., Ohnuki,T. and Miyazaki,K. (2009) Environ. Microbiol. 9 (9), 2289-2297
3] Suenaga,H., Koyama,Y., Miyakoshi,M., Miyazaki,R., Yano,H., Sota,M., Ohtsubo,Y., Tsuda,M. and Miyazaki,K. (2009) ISME J 3 (12), 1335-1348