ISOan4

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS990574 ND Octadecabacter antarcticus
Octadecabacter antarcticus 307
DNA section
IS Length : 1052 bp

Ends


IR Length : 20/22

IRL : GGCTTTGTTGCACAAATCGCGTCACGAGGATTCACTGTATGAATCCAGCG
IRR : GGCTTTGTTGCACAAATCGGGTTGAGGTCGTACTTCCCCTAAAACCGGAC

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTTTTATACATTGGCGTGCAAGAAAAT9
ATTATTTTGTTGTGGAGTATCCTATTCTGTTGAAAAAC0
TTGCGTTTGGCCAGCGACACCAGCAACTATCGAGATCC0

DNA sequence

GGCTTTGTTGCACAAATCGCGTCACGAGGATTCACTGTATGAATCCAGCGTGATAGCTGGCGGTTATGAGCAGCTGGATACCTACAAAGTATAAGACCCG
GAACTGGGCTGAGTACAATTTTTCACTGAAGATGCGGGGATCGCTTTCGATCTGGTTTGACGCGGGGATGACGTGGGAGGCTGTGCCTTCAGGGCGGCGG
GGACGCCAACAAGCCTACAGCGATGCGGCGATACAAGCCTGCCTGACCCTCAAAGTGCTGTTCGGTTTGCCGTTGAGGCAGACGGCTGGATTTGTAGAAA
GCCTTCTCAAGCTTGCCGGTCTGAACTGGTCAGTGCCGGATTTCAGTACCTTATGTCGCCGTCAGAGGACGTTATCGGTGGCCATCCCGTACAAGGGCTC
AACCGGACCACTGCACCTGCTGATAGATAGTACAGGCATCAAGGCTGAGGGCGAAGGAGAATGGAACGCACGCAAGCACGGTGGACCCAAACGGCGGTTG
TGGCGCAAGATACATATTGGGATTGATGAACAAACGCTGGAAATACGGGCCGTCGAGGTCACTAACAGCAGCATCGGGGACGCGCCCATGTTGCCTGACC
TGCTCAATCAGATCCCCGCTGATCAGGAACTCGGTAGCGTCACAGCCGACGGGGCATACGACACCCGCAAATGCTACGATGCGATTGCCGCGCGAAATGC
CCACGCCGTCATACCGCCGCGCAAGAATGCCAAGTTATGGAAGCACGACACACCCGGGGCCAGAGCGCGCAACGAAGCAGTGCGAGCCTCAAAGTATCTA
GGCTCCGCGTTGTGGCGACAGGTGACCGGATATCACCGCAGAAGCCGCGTTGAGACAAAGATGCATTGTGTGAAATTACTGGGTCAGCGCCTCTCAGCGC
GTGACTTTGATCGGCAGGTTGCGGAGATCCAAATCCGTGCTGCGATCCTAAACGGCTTCACAGCGCTTGGCATCCCCAAGACAGAGGCCGTAGGCTAAAT
CCGTCCGGTTTTAGGGGAAGTACGACCTCAACCCGATTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa66998+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSWIPTKYKTRNWAEYNFSLKMRGSLSIWFDAGMTWEAVPSGRRGRQQAYSDAAIQACLTLKVLFGLPLRQTAGFVESLLKLAGLNWSVPDFSTLCRRQ
RTLSVAIPYKGSTGPLHLLIDSTGIKAEGEGEWNARKHGGPKRRLWRKIHIGIDEQTLEIRAVEVTNSSIGDAPMLPDLLNQIPADQELGSVTADGAYDT
RKCYDAIAARNAHAVIPPRKNAKLWKHDTPGARARNEAVRASKYLGSALWRQVTGYHRRSRVETKMHCVKLLGQRLSARDFDRQVAEIQIRAAILNGFTA
LGIPKTEAVG

 

Blast result :
Comments
ISOan4 is 88% aa similar to ISPlc1.
References
1] ISfinder annotation (2010)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.