ISCsa7
- Family ISNCY
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009437 | ND | Caldicellulosiruptor saccharolyticus | Anaerocellum thermophilum Caldicellulosiruptor obsidiansis Caldicellulosiruptor saccharolyticus Caldicellulosiruptor hydrothermalis Caldicellulosiruptor owensensis |
DNA section
IS Length : 1118 bp
Ends
IR Length : 14/17
IRL : TTAGCTTGTTGAATAAAACAGATTAACAGAAAAGACAATAAATAGATATA
IRR : CAAGTTGTTGAATAAATAATTATACCATTAATGTTACTATATAGAACTAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATAAAATATA | TTCATTATTT | 0 | |
| ATTAATGAAT | ATT | CTATTCTCTT | 3 |
| GGTGTTATTC | ATATAA | TGAGTATAGA | 6 |
| ATCTTTTAAA | AAAGAA | TTATAAATTG | 6 |
| ATCACCTCAT | AATTACAA | ATTAAAAATG | 8 |
| ACAAGCTCTA | TTATATAA | AAAAAAAGTG | 8 |
| TTTTTTTAAA | TAATAAAAC | TATCTTCTTT | 9 |
| TTCACAAATA | ATTGTAATA | TATATTGCAA | 9 |
| AATCGTTAAG | AAGTACTTT | TAATTTGTTA | 9 |
| ATTTTGAGAG | AGTATTAAA | TGAAATGGGT | 9 |
| CTTGATTGAT | AAAAATAATT | TTACAAGCTG | 10 |
| TATTATTATA | ATATGCATTA | TTATTTATAC | 10 |
| GACGTTTATT | ATTCAGAAGA | TTTTAAAAAG | 10 |
| GCCACTTATT | GCTATTTTTA | TATCAATGAT | 10 |
DNA sequence
TTAGCTTGTTGAATAAAACAGATTAACAGAAAAGACAATAAATAGATATATATAAAAAGCCATCCTCCTTAAGGTAAAATTATAGCAAGAGAAGACTAAA
AACACGTAACTAAGGAGGATGGCAATGACTAATTTTATTAAAACACAAAAACAAAAATTTTTAAAGATACTTATGACAATTGAGAAAGTAATAAAAGCCT
TGGGATTAAAGATAAAAAGTAGCAGGAGAGGAAGACCGAAGAAATTTAAGCTAAGCCATATAATAGCTTGTTTTGTTTACAAAGTCAAAAACAAGATAAA
CAGTTTCAGGGAATTAGAATACAAGATAAATGAAGATGAAGAATTTAAAAAGGCTATAGGGATAGAAAAGAGCCCCGATCATACATATTTTTCGAAATGG
GCAAAAGTAATTGAAGAAGAATATATAGAAGGGATAGCAAGAATTTTAGTGAGAGAAATAGATCCGCAGACAAAAGTTTGTGCTATAGATTCTACACCTT
TGAGAAGCTCGAGGGGTGACAAAGAGGCAGAAGTAGGAGTATGTGTTAGTTTAGGTTTTTACAATGGGTATAAATTACATGTGTTAGCAACAGTTGAAAG
CGAGGTTATACCTATAGTATGGTGGTTGACATGTGCAAATATCCATGACAGTAAAGTAGTAGAACTTTTGTATGAAGCTAAGATATTTGGACCTGAAGTG
ATATTGGCAGATGCAGGTTATGATTGTGCGAAATGGTTTGAGGTGTCAGATAGACTTGGGATGAAGTTTGTAGCGGCGGTAAATAAGAGAAATAGTAAGG
ATTTCAGTAATGTAAAAAATATTTTGAGGATAAAAAATATGGAATTTTTAAGAAGCGAAGAAGGACAAAAGTTATATAAGCAGAGGACAAAAATAGAAAG
ATTATTTGGTAAGTTAAAAGGAGAATACAATTTAGAACAAGTAAGGTTAAGAGGTTTTAGAACATATAAGAAGCATGTAGACTGGATTATGATTACTTAT
TTGATAGAGGTCTATATTCAAAAAATTGAAAACTGTAAATTTTCTTTTAAATACACGTGGAATAATTTATAGTTCTATATAGTAACATTAATGGTATAAT
TATTTATTCAACAACTTG
AACACGTAACTAAGGAGGATGGCAATGACTAATTTTATTAAAACACAAAAACAAAAATTTTTAAAGATACTTATGACAATTGAGAAAGTAATAAAAGCCT
TGGGATTAAAGATAAAAAGTAGCAGGAGAGGAAGACCGAAGAAATTTAAGCTAAGCCATATAATAGCTTGTTTTGTTTACAAAGTCAAAAACAAGATAAA
CAGTTTCAGGGAATTAGAATACAAGATAAATGAAGATGAAGAATTTAAAAAGGCTATAGGGATAGAAAAGAGCCCCGATCATACATATTTTTCGAAATGG
GCAAAAGTAATTGAAGAAGAATATATAGAAGGGATAGCAAGAATTTTAGTGAGAGAAATAGATCCGCAGACAAAAGTTTGTGCTATAGATTCTACACCTT
TGAGAAGCTCGAGGGGTGACAAAGAGGCAGAAGTAGGAGTATGTGTTAGTTTAGGTTTTTACAATGGGTATAAATTACATGTGTTAGCAACAGTTGAAAG
CGAGGTTATACCTATAGTATGGTGGTTGACATGTGCAAATATCCATGACAGTAAAGTAGTAGAACTTTTGTATGAAGCTAAGATATTTGGACCTGAAGTG
ATATTGGCAGATGCAGGTTATGATTGTGCGAAATGGTTTGAGGTGTCAGATAGACTTGGGATGAAGTTTGTAGCGGCGGTAAATAAGAGAAATAGTAAGG
ATTTCAGTAATGTAAAAAATATTTTGAGGATAAAAAATATGGAATTTTTAAGAAGCGAAGAAGGACAAAAGTTATATAAGCAGAGGACAAAAATAGAAAG
ATTATTTGGTAAGTTAAAAGGAGAATACAATTTAGAACAAGTAAGGTTAAGAGGTTTTAGAACATATAAGAAGCATGTAGACTGGATTATGATTACTTAT
TTGATAGAGGTCTATATTCAAAAAATTGAAAACTGTAAATTTTCTTTTAAATACACGTGGAATAATTTATAGTTCTATATAGTAACATTAATGGTATAAT
TATTTATTCAACAACTTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 948 bp | 315 aa | 125 | 1072 | + | No |
Chemistry : Unknow
ORF sequence :
MTNFIKTQKQKFLKILMTIEKVIKALGLKIKSSRRGRPKKFKLSHIIACFVYKVKNKINSFRELEYKINEDEEFKKAIGIEKSPDHTYFSKWAKVIEEEY
IEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYD
CAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQK
IENCKFSFKYTWNNL
IEGIARILVREIDPQTKVCAIDSTPLRSSRGDKEAEVGVCVSLGFYNGYKLHVLATVESEVIPIVWWLTCANIHDSKVVELLYEAKIFGPEVILADAGYD
CAKWFEVSDRLGMKFVAAVNKRNSKDFSNVKNILRIKNMEFLRSEEGQKLYKQRTKIERLFGKLKGEYNLEQVRLRGFRTYKKHVDWIMITYLIEVYIQK
IENCKFSFKYTWNNL
Blast result :
Comments
ISCsa7 is 48% aa similar to ISBth165.
References
1] Land M. (2010) Direct submission.
2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.
2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.