ISRel9

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004041 ND Rhizobium etli
Rhizobium etli CFN 42 plasmid p42a
Rhizobium etli CFN 42 plasmid p42d
DNA section
IS Length : 1571 bp

Ends


IR Length : 8

IRL : tccCATGAGGAGTGAACAGCGGCCGCCGCTCTGGCAGAGTGAGGTTGCAT
IRR : --aCATGAGGATTTTGCCGTCAAGATCAATCATAGTTTCATAGCTTGTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CGGCTTTAGAGAGCTTTGAG0
CGGCTTTAGAGAGCTTTCTC0

DNA sequence

TCCCATGAGGAGTGAACAGCGGCCGCCGCTCTGGCAGAGTGAGGTTGCATCAAAACACTCGCTCAGGAGGAGCAGTTTATGGAACCTGCATCCATTCATC
CGACCGCTGTCCGCATTGATCTTGGCGCAATTTTTGTATCATTGGAACTGAGCCGATCGACCTGGTTGATCACTTCGCTGTCGCCTGGCAGTGGCGAGAA
GATGTCGAAGCACGTAGTGGCCGGTGGCAATGTAGCCGAGCTGCTGGATCGATTTGAGCAGCTACAACAGAAGGCGCGGTTGAGAACAGGGAAGTTATTT
CCCATCGTGACGATCCAGGAGGCAGGATTGGACGGCTTCTGGATACACCGCGTGCTGGAGACTCACGGCATCGAAAGTTACGTCGTCGACGCAGCTTCGA
TCGCGACTTCCCGTCGACGTCGGCGTGCCAAGACCGACAAGATCGATGGAGAGGCTCTGACGCGCACATTGCTTGCATTCAAGCGCGGCGAGCCTCGCGT
ATGTGCGATGGTCAGAGCGCCAGATCCGAAGGACGAAGATCGACGTCGGATTTGCCGGGAACGCAAAGTTTTGATTGCTGAGCGGGTCAGGCATGTCAAT
CGCGTGAAGGGGCTACTCTTCGCTCAAGGCGTCAGCGGCTATCAACCGCTCCGTAAGGATCGCCGTCAGCGGCTGGAGGAACTCCAGACCGGAGATGGGC
GCGAGTTACCGAAACACCTGAAGGCTCAAATCAATCGCGAACTCGACCGTCTCGAGTTGCTGCTAGAACAGATCGCTGCAGTGGAGAGCGAGCGTAATTC
TCTCCTATCGATGGACGAGCAGCCAGCGGTTGAGGCAACCTCGCCCGCAGCGATGCTGCTGTCCTTGAAGGGTGTTGGCGCTGAATTTGCCGCCGTTCTT
TGGACCGAAGCCCTGTCCCGGCATTTTGATAATCGGCGGCAGATTGCCGCCTATGCAGGTTTGACACCAACCCCATGGATGAGCGGGACCATCGACCACG
AACAGGGTGTCTCAAAGGCAGGAAACCCTCGGCTGCGCACCACGATGATCCAACTGTCTTGGTTGTGGCTACGCAATCAGCCAGCATCAGCGCTTAGCCG
TTGGTTTGTGGATCGGGTTCAGTCGAATGGTGGACGCTTAAAAAAAGCCGCGATAGTGGCCCTGGCGCGCAAACTCCTTATCGCACTGTGGAAGTTTGTC
ACCGCGGGTGTTGTCATCGAGGGGGCTGTCATGAAGACCGCCTGACGACCCCAAAAGATTGCCGAATACACAAATCTTCCAGGACTGATCACTCCTGGCG
GATCCAGGTGAGCGAACCGCCTCAAAGTCGGGCTTTAAATGCCGCGCTTTAGATTGGTCCCGTTCTCCTGAGCCTTGCCGCTACGCAAGCGGGATAATGG
TGCTGCCGGACAAAACGGCGACCGTATGTGAGTTTGAACCGGTGACGGAAACGTGCCGCGTCAAGCAAAGTGGCTCAGACCATGGGTTCGAAACGAAATT
GAAGGGAACAAGCTATGAAACTATGATTGATCTTGACGGCAAAATCCTCATGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa791245+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEPASIHPTAVRIDLGAIFVSLELSRSTWLITSLSPGSGEKMSKHVVAGGNVAELLDRFEQLQQKARLRTGKLFPIVTIQEAGLDGFWIHRVLETHGIES
YVVDAASIATSRRRRRAKTDKIDGEALTRTLLAFKRGEPRVCAMVRAPDPKDEDRRRICRERKVLIAERVRHVNRVKGLLFAQGVSGYQPLRKDRRQRLE
ELQTGDGRELPKHLKAQINRELDRLELLLEQIAAVESERNSLLSMDEQPAVEATSPAAMLLSLKGVGAEFAAVLWTEALSRHFDNRRQIAAYAGLTPTPW
MSGTIDHEQGVSKAGNPRLRTTMIQLSWLWLRNQPASALSRWFVDRVQSNGGRLKKAAIVALARKLLIALWKFVTAGVVIEGAVMKTA

 

Blast result :
Comments
ISRel9 is 64% aa similar to ISGdi7.
File updated : May 11 2015. The sequence is shorter, there is a copy inserted in ISRel26.
References