ISRel9
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004041 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a Rhizobium etli CFN 42 plasmid p42d |
DNA section
IS Length : 1571 bp
Ends
IR Length : 8
IRL : tccCATGAGGAGTGAACAGCGGCCGCCGCTCTGGCAGAGTGAGGTTGCAT
IRR : --aCATGAGGATTTTGCCGTCAAGATCAATCATAGTTTCATAGCTTGTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCTTTAGA | GAGCTTTGAG | 0 | |
CGGCTTTAGA | GAGCTTTCTC | 0 |
DNA sequence
TCCCATGAGGAGTGAACAGCGGCCGCCGCTCTGGCAGAGTGAGGTTGCATCAAAACACTCGCTCAGGAGGAGCAGTTTATGGAACCTGCATCCATTCATC
CGACCGCTGTCCGCATTGATCTTGGCGCAATTTTTGTATCATTGGAACTGAGCCGATCGACCTGGTTGATCACTTCGCTGTCGCCTGGCAGTGGCGAGAA
GATGTCGAAGCACGTAGTGGCCGGTGGCAATGTAGCCGAGCTGCTGGATCGATTTGAGCAGCTACAACAGAAGGCGCGGTTGAGAACAGGGAAGTTATTT
CCCATCGTGACGATCCAGGAGGCAGGATTGGACGGCTTCTGGATACACCGCGTGCTGGAGACTCACGGCATCGAAAGTTACGTCGTCGACGCAGCTTCGA
TCGCGACTTCCCGTCGACGTCGGCGTGCCAAGACCGACAAGATCGATGGAGAGGCTCTGACGCGCACATTGCTTGCATTCAAGCGCGGCGAGCCTCGCGT
ATGTGCGATGGTCAGAGCGCCAGATCCGAAGGACGAAGATCGACGTCGGATTTGCCGGGAACGCAAAGTTTTGATTGCTGAGCGGGTCAGGCATGTCAAT
CGCGTGAAGGGGCTACTCTTCGCTCAAGGCGTCAGCGGCTATCAACCGCTCCGTAAGGATCGCCGTCAGCGGCTGGAGGAACTCCAGACCGGAGATGGGC
GCGAGTTACCGAAACACCTGAAGGCTCAAATCAATCGCGAACTCGACCGTCTCGAGTTGCTGCTAGAACAGATCGCTGCAGTGGAGAGCGAGCGTAATTC
TCTCCTATCGATGGACGAGCAGCCAGCGGTTGAGGCAACCTCGCCCGCAGCGATGCTGCTGTCCTTGAAGGGTGTTGGCGCTGAATTTGCCGCCGTTCTT
TGGACCGAAGCCCTGTCCCGGCATTTTGATAATCGGCGGCAGATTGCCGCCTATGCAGGTTTGACACCAACCCCATGGATGAGCGGGACCATCGACCACG
AACAGGGTGTCTCAAAGGCAGGAAACCCTCGGCTGCGCACCACGATGATCCAACTGTCTTGGTTGTGGCTACGCAATCAGCCAGCATCAGCGCTTAGCCG
TTGGTTTGTGGATCGGGTTCAGTCGAATGGTGGACGCTTAAAAAAAGCCGCGATAGTGGCCCTGGCGCGCAAACTCCTTATCGCACTGTGGAAGTTTGTC
ACCGCGGGTGTTGTCATCGAGGGGGCTGTCATGAAGACCGCCTGACGACCCCAAAAGATTGCCGAATACACAAATCTTCCAGGACTGATCACTCCTGGCG
GATCCAGGTGAGCGAACCGCCTCAAAGTCGGGCTTTAAATGCCGCGCTTTAGATTGGTCCCGTTCTCCTGAGCCTTGCCGCTACGCAAGCGGGATAATGG
TGCTGCCGGACAAAACGGCGACCGTATGTGAGTTTGAACCGGTGACGGAAACGTGCCGCGTCAAGCAAAGTGGCTCAGACCATGGGTTCGAAACGAAATT
GAAGGGAACAAGCTATGAAACTATGATTGATCTTGACGGCAAAATCCTCATGT
CGACCGCTGTCCGCATTGATCTTGGCGCAATTTTTGTATCATTGGAACTGAGCCGATCGACCTGGTTGATCACTTCGCTGTCGCCTGGCAGTGGCGAGAA
GATGTCGAAGCACGTAGTGGCCGGTGGCAATGTAGCCGAGCTGCTGGATCGATTTGAGCAGCTACAACAGAAGGCGCGGTTGAGAACAGGGAAGTTATTT
CCCATCGTGACGATCCAGGAGGCAGGATTGGACGGCTTCTGGATACACCGCGTGCTGGAGACTCACGGCATCGAAAGTTACGTCGTCGACGCAGCTTCGA
TCGCGACTTCCCGTCGACGTCGGCGTGCCAAGACCGACAAGATCGATGGAGAGGCTCTGACGCGCACATTGCTTGCATTCAAGCGCGGCGAGCCTCGCGT
ATGTGCGATGGTCAGAGCGCCAGATCCGAAGGACGAAGATCGACGTCGGATTTGCCGGGAACGCAAAGTTTTGATTGCTGAGCGGGTCAGGCATGTCAAT
CGCGTGAAGGGGCTACTCTTCGCTCAAGGCGTCAGCGGCTATCAACCGCTCCGTAAGGATCGCCGTCAGCGGCTGGAGGAACTCCAGACCGGAGATGGGC
GCGAGTTACCGAAACACCTGAAGGCTCAAATCAATCGCGAACTCGACCGTCTCGAGTTGCTGCTAGAACAGATCGCTGCAGTGGAGAGCGAGCGTAATTC
TCTCCTATCGATGGACGAGCAGCCAGCGGTTGAGGCAACCTCGCCCGCAGCGATGCTGCTGTCCTTGAAGGGTGTTGGCGCTGAATTTGCCGCCGTTCTT
TGGACCGAAGCCCTGTCCCGGCATTTTGATAATCGGCGGCAGATTGCCGCCTATGCAGGTTTGACACCAACCCCATGGATGAGCGGGACCATCGACCACG
AACAGGGTGTCTCAAAGGCAGGAAACCCTCGGCTGCGCACCACGATGATCCAACTGTCTTGGTTGTGGCTACGCAATCAGCCAGCATCAGCGCTTAGCCG
TTGGTTTGTGGATCGGGTTCAGTCGAATGGTGGACGCTTAAAAAAAGCCGCGATAGTGGCCCTGGCGCGCAAACTCCTTATCGCACTGTGGAAGTTTGTC
ACCGCGGGTGTTGTCATCGAGGGGGCTGTCATGAAGACCGCCTGACGACCCCAAAAGATTGCCGAATACACAAATCTTCCAGGACTGATCACTCCTGGCG
GATCCAGGTGAGCGAACCGCCTCAAAGTCGGGCTTTAAATGCCGCGCTTTAGATTGGTCCCGTTCTCCTGAGCCTTGCCGCTACGCAAGCGGGATAATGG
TGCTGCCGGACAAAACGGCGACCGTATGTGAGTTTGAACCGGTGACGGAAACGTGCCGCGTCAAGCAAAGTGGCTCAGACCATGGGTTCGAAACGAAATT
GAAGGGAACAAGCTATGAAACTATGATTGATCTTGACGGCAAAATCCTCATGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1167 bp | 388 aa | 79 | 1245 | + | No |
Chemistry : DEDD
ORF sequence :
MEPASIHPTAVRIDLGAIFVSLELSRSTWLITSLSPGSGEKMSKHVVAGGNVAELLDRFEQLQQKARLRTGKLFPIVTIQEAGLDGFWIHRVLETHGIES
YVVDAASIATSRRRRRAKTDKIDGEALTRTLLAFKRGEPRVCAMVRAPDPKDEDRRRICRERKVLIAERVRHVNRVKGLLFAQGVSGYQPLRKDRRQRLE
ELQTGDGRELPKHLKAQINRELDRLELLLEQIAAVESERNSLLSMDEQPAVEATSPAAMLLSLKGVGAEFAAVLWTEALSRHFDNRRQIAAYAGLTPTPW
MSGTIDHEQGVSKAGNPRLRTTMIQLSWLWLRNQPASALSRWFVDRVQSNGGRLKKAAIVALARKLLIALWKFVTAGVVIEGAVMKTA
YVVDAASIATSRRRRRAKTDKIDGEALTRTLLAFKRGEPRVCAMVRAPDPKDEDRRRICRERKVLIAERVRHVNRVKGLLFAQGVSGYQPLRKDRRQRLE
ELQTGDGRELPKHLKAQINRELDRLELLLEQIAAVESERNSLLSMDEQPAVEATSPAAMLLSLKGVGAEFAAVLWTEALSRHFDNRRQIAAYAGLTPTPW
MSGTIDHEQGVSKAGNPRLRTTMIQLSWLWLRNQPASALSRWFVDRVQSNGGRLKKAAIVALARKLLIALWKFVTAGVVIEGAVMKTA
Blast result :
Comments
ISRel9 is 64% aa similar to ISGdi7.
File updated : May 11 2015. The sequence is shorter, there is a copy inserted in ISRel26.
File updated : May 11 2015. The sequence is shorter, there is a copy inserted in ISRel26.
References