ISCsa6
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009437 | ND | Caldicellulosiruptor saccharolyticus | Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor lactoaceticus Caldicellulosiruptor krisjanssonii Caldicellulosiruptor obsidiansis |
DNA section
IS Length : 1258 bp
Ends
IR Length : 19/28
IRL : CTCGAATAGGTGTAGAGATATTTACCACAGCGAAAGAATGTACGAAGAAG
IRR : GGTACGTGGTGAAGACATATTTACCACCAAATTTATTACAGAACAGAGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTACTCATAT | TTCAGAATGA | 0 | |
TTTCAAGCCG | TTTTTAAAATTTAT | GTAAAAGACT | 14 |
GCACAATGTT | TAGCGGTAACAAAA | CAGTTCCTTG | 14 |
TGTCGAGGAA | CACTCCAGTTCTTT | TTACCATTAT | 14 |
AGGAAAGAGG | CTATGTAGTTTATT | TATTTTTTAC | 14 |
TGTCAATTAA | TTAAAAAATTTTTT | GTGTACAAAA | 14 |
TGTCAAGAAA | GTTTAAAACAAGGT | TTTTTTGAAG | 14 |
TGTCAAGCAT | TTTTTTGATAATAG | ATAGCATTGA | 14 |
AGTCAATATA | TTTTTTAAAAAAAT | ATCATTTTCC | 14 |
TGTCAATAGA | TTTTAAAATAAAAA | TCTTGATAAT | 14 |
TGTCAACCAA | AAAGATTTTCAATT | TTTCCTAGAT | 14 |
TGTCAAGACA | GAGGGAGCAAATGG | CAGAAATTGG | 14 |
TGTCAATAGC | CTTTTTAAAAAAAT | TTTTATTGGT | 14 |
ATACAACCAA | ATTTTGAACTTGCAA | TCCTCGTTAC | 15 |
TGTCAATACA | TTTTTTAAATCATAT | CATTGGTATT | 15 |
TGTCAAGTGA | TTTTTTTATTAGAAC | CTCAATTAGG | 15 |
TGTCAAGAAG | GTTTGCATAACGGTA | AAGATGGTCA | 15 |
TTTCAACAAT | AAAACCAAAAAAAAT | AAGCTGGCAA | 15 |
TGTCAACTAC | TTTTTCATTTTAGGA | TAGTAGGAAA | 15 |
AAGCAAGCTG | TTTTAATAAACACCT | GAGCATCTCC | 15 |
TGTCAAATGT | ATCGTAGGTCAAAAA | TGAAAGCTGG | 15 |
TGTCAATATA | CCCTTACTTTTATAA | AGCGCTCATT | 15 |
TGTCAATTCT | TTATTGAACTGTGAT | AGAATCCTTA | 15 |
TTGCAAGAGA | AATTTTAATAAGTTG | CTCCGCCTTC | 15 |
TGTCTATATC | CATTTTTATGATAAAT | CTAAAACTTA | 16 |
DNA sequence
CTCGAATAGGTGTAGAGATATTTACCACAGCGAAAGAATGTACGAAGAAGAAAATTTCATAAAAAGAGTTGAGGCTGCCTCCCTCCTGTTTGATATAATT
AAAAAGTGTAATCTAATATTCAAAAGAAAAATAGAAAAACTACCAGGATGGGAGGACAGCCTACTATGAATATTATATCATACCACGAACTAAGAAAAAT
ATCCCCTCAAAAAGCTAGAGAATTAGTTCGAAAAGTCTTTGAATCAAATAACAAAAACGTATCAAAAACTGCTAAAATATTAGGTGTATCAAGACATACC
GTAAGAAGAGCTGTCTACGGTCCTCTTGAAGATAAATCAAAAAAACCTAAATCTTCTCCCAAAAAGCTTTCTTCTGAACTCGAAAATTTTATTGTCGAAG
AGTCTAAAAAAACTGGTTTTAGATATAGACGTTTGTCTTTTTATCTTCTCAGAAAATATGGTATCAAAATAAGTGAAAACACAATAAAGTCAATTCTTAG
AAGAAACTCTGTAGCTCGAAAAACAAAAAGAACAAAAAAAGGTGAAAGAAGTCTATACGATTATGAAACTCTTATCCCATTTTCTGAATTTCAGCTTGAT
ACAAAACATCTTTTAGACAAAGAAAGTCTTCCCAAGGAGGTATATGAACATATGAAAAGATACAATTTGCCTTGCTATGAGTGGAACATAATAGATGTTG
CAACAAGAACAAGATTTACAGCCTATTCTTACGAACTTTCATCCGCTTTTGGATTTATGTTCATATCCTTAGTTGCATTATGGTTAAGAACTCATAATGT
AAGAAATATAATAAAGATCCGATTAGACAATGGAGCAGAATTTTGTGGAGGAAGCGAAAGAAAGTTAAAGCAGTGGAATGAGATGCTGTCATTTTTGGGT
GTAGAACTAAATCCTATTCCACCAAAAGCAAAGCATTTAATGGGTATAATTGAAAATTCACATAGAGCTGATGATGAGTATTTTTTAATGATTCATGCTG
AAAGATGTAAAACAAAAGATGAATTTATTCAAAGAGCCCAGAAATGGCAAGATACATGGAACTTTTTCAGACCTCATAATGGTAAAGGAATGAACGGGAG
GACACCATTCGAAAAATTCATAGCTTCAAAATCTCTGGTCTCCTCCCATATATTTCAATTTCCTACATTACTTCTTGAGGATATTATGAAAAAAGTAGGC
ACCTTCTATTCTCTGTTCTGTAATAAATTTGGTGGTAAATATGTCTTCACCACGTACC
AAAAAGTGTAATCTAATATTCAAAAGAAAAATAGAAAAACTACCAGGATGGGAGGACAGCCTACTATGAATATTATATCATACCACGAACTAAGAAAAAT
ATCCCCTCAAAAAGCTAGAGAATTAGTTCGAAAAGTCTTTGAATCAAATAACAAAAACGTATCAAAAACTGCTAAAATATTAGGTGTATCAAGACATACC
GTAAGAAGAGCTGTCTACGGTCCTCTTGAAGATAAATCAAAAAAACCTAAATCTTCTCCCAAAAAGCTTTCTTCTGAACTCGAAAATTTTATTGTCGAAG
AGTCTAAAAAAACTGGTTTTAGATATAGACGTTTGTCTTTTTATCTTCTCAGAAAATATGGTATCAAAATAAGTGAAAACACAATAAAGTCAATTCTTAG
AAGAAACTCTGTAGCTCGAAAAACAAAAAGAACAAAAAAAGGTGAAAGAAGTCTATACGATTATGAAACTCTTATCCCATTTTCTGAATTTCAGCTTGAT
ACAAAACATCTTTTAGACAAAGAAAGTCTTCCCAAGGAGGTATATGAACATATGAAAAGATACAATTTGCCTTGCTATGAGTGGAACATAATAGATGTTG
CAACAAGAACAAGATTTACAGCCTATTCTTACGAACTTTCATCCGCTTTTGGATTTATGTTCATATCCTTAGTTGCATTATGGTTAAGAACTCATAATGT
AAGAAATATAATAAAGATCCGATTAGACAATGGAGCAGAATTTTGTGGAGGAAGCGAAAGAAAGTTAAAGCAGTGGAATGAGATGCTGTCATTTTTGGGT
GTAGAACTAAATCCTATTCCACCAAAAGCAAAGCATTTAATGGGTATAATTGAAAATTCACATAGAGCTGATGATGAGTATTTTTTAATGATTCATGCTG
AAAGATGTAAAACAAAAGATGAATTTATTCAAAGAGCCCAGAAATGGCAAGATACATGGAACTTTTTCAGACCTCATAATGGTAAAGGAATGAACGGGAG
GACACCATTCGAAAAATTCATAGCTTCAAAATCTCTGGTCTCCTCCCATATATTTCAATTTCCTACATTACTTCTTGAGGATATTATGAAAAAAGTAGGC
ACCTTCTATTCTCTGTTCTGTAATAAATTTGGTGGTAAATATGTCTTCACCACGTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1092 bp | 364 aa | 166 | 1257 | + | No |
Chemistry : DDE
ORF sequence :
MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGI
KISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFI
SLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNF
FRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTY
KISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFI
SLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNF
FRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTY
Blast result :
Comments
There were 25 copies of ISCsa6 in this genome.
This IS has atypic IRs: it begins with 'CTC' instead of 'TGT'.
There is no stop codon at the end of the element, the transposase use the first Stop codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
ISCsa6 is 45% aa similar to ISMtsp15.
This IS has atypic IRs: it begins with 'CTC' instead of 'TGT'.
There is no stop codon at the end of the element, the transposase use the first Stop codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
ISCsa6 is 45% aa similar to ISMtsp15.
References
1] Land M. (2010) Direct submission.
2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.
2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.