ISCsa6

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009437 ND Caldicellulosiruptor saccharolyticus
Caldicellulosiruptor saccharolyticus DSM 8903
Caldicellulosiruptor lactoaceticus
Caldicellulosiruptor krisjanssonii
Caldicellulosiruptor obsidiansis
DNA section
IS Length : 1258 bp

Ends


IR Length : 19/28

IRL : CTCGAATAGGTGTAGAGATATTTACCACAGCGAAAGAATGTACGAAGAAG
IRR : GGTACGTGGTGAAGACATATTTACCACCAAATTTATTACAGAACAGAGAA

Insertion site


Left flankDirect repeatRight flankDR Length
TTACTCATATTTCAGAATGA0
TTTCAAGCCGTTTTTAAAATTTATGTAAAAGACT14
GCACAATGTTTAGCGGTAACAAAACAGTTCCTTG14
TGTCGAGGAACACTCCAGTTCTTTTTACCATTAT14
AGGAAAGAGGCTATGTAGTTTATTTATTTTTTAC14
TGTCAATTAATTAAAAAATTTTTTGTGTACAAAA14
TGTCAAGAAAGTTTAAAACAAGGTTTTTTTGAAG14
TGTCAAGCATTTTTTTGATAATAGATAGCATTGA14
AGTCAATATATTTTTTAAAAAAATATCATTTTCC14
TGTCAATAGATTTTAAAATAAAAATCTTGATAAT14
TGTCAACCAAAAAGATTTTCAATTTTTCCTAGAT14
TGTCAAGACAGAGGGAGCAAATGGCAGAAATTGG14
TGTCAATAGCCTTTTTAAAAAAATTTTTATTGGT14
ATACAACCAAATTTTGAACTTGCAATCCTCGTTAC15
TGTCAATACATTTTTTAAATCATATCATTGGTATT15
TGTCAAGTGATTTTTTTATTAGAACCTCAATTAGG15
TGTCAAGAAGGTTTGCATAACGGTAAAGATGGTCA15
TTTCAACAATAAAACCAAAAAAAATAAGCTGGCAA15
TGTCAACTACTTTTTCATTTTAGGATAGTAGGAAA15
AAGCAAGCTGTTTTAATAAACACCTGAGCATCTCC15
TGTCAAATGTATCGTAGGTCAAAAATGAAAGCTGG15
TGTCAATATACCCTTACTTTTATAAAGCGCTCATT15
TGTCAATTCTTTATTGAACTGTGATAGAATCCTTA15
TTGCAAGAGAAATTTTAATAAGTTGCTCCGCCTTC15
TGTCTATATCCATTTTTATGATAAATCTAAAACTTA16

DNA sequence

CTCGAATAGGTGTAGAGATATTTACCACAGCGAAAGAATGTACGAAGAAGAAAATTTCATAAAAAGAGTTGAGGCTGCCTCCCTCCTGTTTGATATAATT
AAAAAGTGTAATCTAATATTCAAAAGAAAAATAGAAAAACTACCAGGATGGGAGGACAGCCTACTATGAATATTATATCATACCACGAACTAAGAAAAAT
ATCCCCTCAAAAAGCTAGAGAATTAGTTCGAAAAGTCTTTGAATCAAATAACAAAAACGTATCAAAAACTGCTAAAATATTAGGTGTATCAAGACATACC
GTAAGAAGAGCTGTCTACGGTCCTCTTGAAGATAAATCAAAAAAACCTAAATCTTCTCCCAAAAAGCTTTCTTCTGAACTCGAAAATTTTATTGTCGAAG
AGTCTAAAAAAACTGGTTTTAGATATAGACGTTTGTCTTTTTATCTTCTCAGAAAATATGGTATCAAAATAAGTGAAAACACAATAAAGTCAATTCTTAG
AAGAAACTCTGTAGCTCGAAAAACAAAAAGAACAAAAAAAGGTGAAAGAAGTCTATACGATTATGAAACTCTTATCCCATTTTCTGAATTTCAGCTTGAT
ACAAAACATCTTTTAGACAAAGAAAGTCTTCCCAAGGAGGTATATGAACATATGAAAAGATACAATTTGCCTTGCTATGAGTGGAACATAATAGATGTTG
CAACAAGAACAAGATTTACAGCCTATTCTTACGAACTTTCATCCGCTTTTGGATTTATGTTCATATCCTTAGTTGCATTATGGTTAAGAACTCATAATGT
AAGAAATATAATAAAGATCCGATTAGACAATGGAGCAGAATTTTGTGGAGGAAGCGAAAGAAAGTTAAAGCAGTGGAATGAGATGCTGTCATTTTTGGGT
GTAGAACTAAATCCTATTCCACCAAAAGCAAAGCATTTAATGGGTATAATTGAAAATTCACATAGAGCTGATGATGAGTATTTTTTAATGATTCATGCTG
AAAGATGTAAAACAAAAGATGAATTTATTCAAAGAGCCCAGAAATGGCAAGATACATGGAACTTTTTCAGACCTCATAATGGTAAAGGAATGAACGGGAG
GACACCATTCGAAAAATTCATAGCTTCAAAATCTCTGGTCTCCTCCCATATATTTCAATTTCCTACATTACTTCTTGAGGATATTATGAAAAAAGTAGGC
ACCTTCTATTCTCTGTTCTGTAATAAATTTGGTGGTAAATATGTCTTCACCACGTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1092 bp364 aa1661257+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIISYHELRKISPQKARELVRKVFESNNKNVSKTAKILGVSRHTVRRAVYGPLEDKSKKPKSSPKKLSSELENFIVEESKKTGFRYRRLSFYLLRKYGI
KISENTIKSILRRNSVARKTKRTKKGERSLYDYETLIPFSEFQLDTKHLLDKESLPKEVYEHMKRYNLPCYEWNIIDVATRTRFTAYSYELSSAFGFMFI
SLVALWLRTHNVRNIIKIRLDNGAEFCGGSERKLKQWNEMLSFLGVELNPIPPKAKHLMGIIENSHRADDEYFLMIHAERCKTKDEFIQRAQKWQDTWNF
FRPHNGKGMNGRTPFEKFIASKSLVSSHIFQFPTLLLEDIMKKVGTFYSLFCNKFGGKYVFTTY

 

Blast result :
Comments
There were 25 copies of ISCsa6 in this genome.
This IS has atypic IRs: it begins with 'CTC' instead of 'TGT'.
There is no stop codon at the end of the element, the transposase use the first Stop codon after the end of the IRR.
The transposase in the database is cut at the end of the IS.
ISCsa6 is 45% aa similar to ISMtsp15.
References
1] Land M. (2010) Direct submission.

2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.

3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.