ISCsa8
- Family IS1634
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009437 | ND | Caldicellulosiruptor saccharolyticus | Caldicellulosiruptor saccharolyticus DSM 8903 Caldicellulosiruptor kronotskyensis Caldicellulosiruptor lactoaceticus Anaerocellum thermophilum Caldicellulosiruptor krisjanssonii |
DNA section
IS Length : 1982 bp
Ends
IR Length : 16
IRL : CTTGACTTTGTCAGTTAGGAGGAGTTTTTGAGCTAACAAAAAATAACAAA
IRR : CTTGACTTTGTCAGTTTGAAACTCAAAAAGCTTGGGAGGACTGGGATTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTAAATGGTA | AAAAAAGAATTGGTCAGTGAAAAAATAGATAGGATATGGTTTAGTTTAAACAGATTAAAAAGGTTTCAAAATATTAACTTGGAAGAATTTAAAAAAGATCAAGATATTCAGGACATAGTG | ATAATTCAAA | 120 |
| CAATTGGGTCAATA | AAAAACGTAGGGACAT | TTTTGTAACCGTTA | 16 |
DNA sequence
CTTGACTTTGTCAGTTAGGAGGAGTTTTTGAGCTAACAAAAAATAACAAAGTCTTAATTTATGCGGGTTTTGAGAATAGAAAAATAAAAAATTTTAAAAA
TTGTAGTGGCAAATTATAGTCTGAAATATGCTATAAATACTTGACATTTTGAATATTTTGTGGTACAATTACTCAAAATACCTTTGAGGAGTTACCATAT
GTTTGTCAAAATAACTAATGCTGGCGGTTACCAGTATGTTAGATTAGTCGAAAACTATCGTGAAAATGGCAAGGTAAAACAAAGAGTGTTATTTAATTTT
GGTAGACTTGATCTTCTCAAAAGTGATCCTGCTTTTAAAAACATTGTAAAAAAACTATCCGACATTGTTGAAAAAACAACTACTGGGAATACAAAAGCTG
TTACTATTGAATCTGAAGAGGATGTATCGGATGCAGTTATAAAAAATTGGGGATACATTGTATTCAGAAAGTTATGGGAAGAACTTGAAATAGATAAGTT
TTTAAAAGAGAGAGCAACAAAAGGGAGAAAGATAAAATTTGATGTAGACAAAGTAAGTTTTTTAATGACCATACAGAGATTGATAGAACCTATGAGCAAA
CTAAGAACTTATCATCAGAGAAATAAATATTTTGGATTTGAAGAGGATATAGATTTAAATCAGTTGTACAGGTGTTTAGATTTTCTTGACAGTATAAAAG
AAGATTTAGAGACGTATCTGTATCAGAAAAATAGGGATTTATTTAAGATGGTAGTTGATGTAGTTTTTTATGACGTGACGACAATATACTTTGAGAGTTG
TAGAGCCGATGAACTTAAAAATTTTGGTTTTAGCAAAGACAACAAGATAAATGAAGTACAGGTTGTGTTAGGGCTTTTGGTAGACAAAGAAGGCAGGCCG
ATAGGTTATGAACTTTTTCCTGGCAATACAATAGATAGCAAGACAATGGTAAAGATACTGAGGAAACTGAAGGAAAAATTTAGTATAGATAAGATAGTGA
TAGTAGCAGACAAAGGGCTCAACAGCAGATTAAATTTAAAGATGATAAAAGAAGCGGGATACGATTATATAGTAGCAAGCAGATTAAAGAATGCAAGTAA
AGAAGTTTTAGATGAAGTATTTGAGCAAGAAGGATATAAAAGGCTTGATGGAAAAAGTTGTTTGAATGCTGAAGAAATTTATGGGGATGAATTCAAATAT
AAGGTATTGGAAAGAACAAATGTTATCAAGGATGAAGAGGGTAAAGAGTTTAAAATAGAAGAGAGACTGATAATAACGTATTCAAGCAAGAGAGCTAAGA
AAGACAAAGAAGACAGAGAGAGATTGGTATCAAAAGCCAAAGAGCTTTTAGAGAACAAAGGAAGTATAACAGCCTTAGAGAAAAAAGGTGCGAGGAAATA
TTTGAAGAAGAAATCAAAGTCAGAAGAATATGTATTGGATGAGGAAGCGATAAAACGAGATGAGAAGTTTGACGGTTACTATGCAATACAAACGAGCAAA
AAGGATATGGATGTAGAAGAAGTTTTAGGAGCATATCACGATTTATGGAAGATAGAACAGTCATTCAGAGTAATGAAAAGCTGTTTAGAAGTACGACCGA
TATATCACTTTACAGAAAGCAGAATAAAAGGACATTTTGTGATATGTTTTTTGGCATTTTTATTACAGAGGACATTGGAATATATTTTGAGGAAAAAAGG
TAAAGGAATAAGTAGTGAAGGGATAATGGAAGCAATAGATTCAATGAATTTTATTGAAATAGAGATAAAAGGGAAGAAATATTTGATAAAGCAAAGGACA
GAAGGAGGAGCTGGAGATATACTGAATGTGATGAAGATAAAGGGGCCGAAAAATTTCATCACATATGAGGAAGGCTTAGAATTTATTGGTATTAGCAAAT
GATGTAGTGACAAAATTGAGGTCCATATTTTGTCAATCCCAGTCCTCCCAAGCTTTTTGAGTTTCAAACTGACAAAGTCAAG
TTGTAGTGGCAAATTATAGTCTGAAATATGCTATAAATACTTGACATTTTGAATATTTTGTGGTACAATTACTCAAAATACCTTTGAGGAGTTACCATAT
GTTTGTCAAAATAACTAATGCTGGCGGTTACCAGTATGTTAGATTAGTCGAAAACTATCGTGAAAATGGCAAGGTAAAACAAAGAGTGTTATTTAATTTT
GGTAGACTTGATCTTCTCAAAAGTGATCCTGCTTTTAAAAACATTGTAAAAAAACTATCCGACATTGTTGAAAAAACAACTACTGGGAATACAAAAGCTG
TTACTATTGAATCTGAAGAGGATGTATCGGATGCAGTTATAAAAAATTGGGGATACATTGTATTCAGAAAGTTATGGGAAGAACTTGAAATAGATAAGTT
TTTAAAAGAGAGAGCAACAAAAGGGAGAAAGATAAAATTTGATGTAGACAAAGTAAGTTTTTTAATGACCATACAGAGATTGATAGAACCTATGAGCAAA
CTAAGAACTTATCATCAGAGAAATAAATATTTTGGATTTGAAGAGGATATAGATTTAAATCAGTTGTACAGGTGTTTAGATTTTCTTGACAGTATAAAAG
AAGATTTAGAGACGTATCTGTATCAGAAAAATAGGGATTTATTTAAGATGGTAGTTGATGTAGTTTTTTATGACGTGACGACAATATACTTTGAGAGTTG
TAGAGCCGATGAACTTAAAAATTTTGGTTTTAGCAAAGACAACAAGATAAATGAAGTACAGGTTGTGTTAGGGCTTTTGGTAGACAAAGAAGGCAGGCCG
ATAGGTTATGAACTTTTTCCTGGCAATACAATAGATAGCAAGACAATGGTAAAGATACTGAGGAAACTGAAGGAAAAATTTAGTATAGATAAGATAGTGA
TAGTAGCAGACAAAGGGCTCAACAGCAGATTAAATTTAAAGATGATAAAAGAAGCGGGATACGATTATATAGTAGCAAGCAGATTAAAGAATGCAAGTAA
AGAAGTTTTAGATGAAGTATTTGAGCAAGAAGGATATAAAAGGCTTGATGGAAAAAGTTGTTTGAATGCTGAAGAAATTTATGGGGATGAATTCAAATAT
AAGGTATTGGAAAGAACAAATGTTATCAAGGATGAAGAGGGTAAAGAGTTTAAAATAGAAGAGAGACTGATAATAACGTATTCAAGCAAGAGAGCTAAGA
AAGACAAAGAAGACAGAGAGAGATTGGTATCAAAAGCCAAAGAGCTTTTAGAGAACAAAGGAAGTATAACAGCCTTAGAGAAAAAAGGTGCGAGGAAATA
TTTGAAGAAGAAATCAAAGTCAGAAGAATATGTATTGGATGAGGAAGCGATAAAACGAGATGAGAAGTTTGACGGTTACTATGCAATACAAACGAGCAAA
AAGGATATGGATGTAGAAGAAGTTTTAGGAGCATATCACGATTTATGGAAGATAGAACAGTCATTCAGAGTAATGAAAAGCTGTTTAGAAGTACGACCGA
TATATCACTTTACAGAAAGCAGAATAAAAGGACATTTTGTGATATGTTTTTTGGCATTTTTATTACAGAGGACATTGGAATATATTTTGAGGAAAAAAGG
TAAAGGAATAAGTAGTGAAGGGATAATGGAAGCAATAGATTCAATGAATTTTATTGAAATAGAGATAAAAGGGAAGAAATATTTGATAAAGCAAAGGACA
GAAGGAGGAGCTGGAGATATACTGAATGTGATGAAGATAAAGGGGCCGAAAAATTTCATCACATATGAGGAAGGCTTAGAATTTATTGGTATTAGCAAAT
GATGTAGTGACAAAATTGAGGTCCATATTTTGTCAATCCCAGTCCTCCCAAGCTTTTTGAGTTTCAAACTGACAAAGTCAAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1704 bp | 567 aa | 199 | 1902 | + | No |
Chemistry : DDE
ORF sequence :
MFVKITNAGGYQYVRLVENYRENGKVKQRVLFNFGRLDLLKSDPAFKNIVKKLSDIVEKTTTGNTKAVTIESEEDVSDAVIKNWGYIVFRKLWEELEIDK
FLKERATKGRKIKFDVDKVSFLMTIQRLIEPMSKLRTYHQRNKYFGFEEDIDLNQLYRCLDFLDSIKEDLETYLYQKNRDLFKMVVDVVFYDVTTIYFES
CRADELKNFGFSKDNKINEVQVVLGLLVDKEGRPIGYELFPGNTIDSKTMVKILRKLKEKFSIDKIVIVADKGLNSRLNLKMIKEAGYDYIVASRLKNAS
KEVLDEVFEQEGYKRLDGKSCLNAEEIYGDEFKYKVLERTNVIKDEEGKEFKIEERLIITYSSKRAKKDKEDRERLVSKAKELLENKGSITALEKKGARK
YLKKKSKSEEYVLDEEAIKRDEKFDGYYAIQTSKKDMDVEEVLGAYHDLWKIEQSFRVMKSCLEVRPIYHFTESRIKGHFVICFLAFLLQRTLEYILRKK
GKGISSEGIMEAIDSMNFIEIEIKGKKYLIKQRTEGGAGDILNVMKIKGPKNFITYEEGLEFIGISK
FLKERATKGRKIKFDVDKVSFLMTIQRLIEPMSKLRTYHQRNKYFGFEEDIDLNQLYRCLDFLDSIKEDLETYLYQKNRDLFKMVVDVVFYDVTTIYFES
CRADELKNFGFSKDNKINEVQVVLGLLVDKEGRPIGYELFPGNTIDSKTMVKILRKLKEKFSIDKIVIVADKGLNSRLNLKMIKEAGYDYIVASRLKNAS
KEVLDEVFEQEGYKRLDGKSCLNAEEIYGDEFKYKVLERTNVIKDEEGKEFKIEERLIITYSSKRAKKDKEDRERLVSKAKELLENKGSITALEKKGARK
YLKKKSKSEEYVLDEEAIKRDEKFDGYYAIQTSKKDMDVEEVLGAYHDLWKIEQSFRVMKSCLEVRPIYHFTESRIKGHFVICFLAFLLQRTLEYILRKK
GKGISSEGIMEAIDSMNFIEIEIKGKKYLIKQRTEGGAGDILNVMKIKGPKNFITYEEGLEFIGISK
Blast result :
Comments
ISCsa8 is 53% aa similar to ISDha9.
References
1] Land M. (2010) Direct submission.
2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.
2] van de Werken,H.J., Verhaart,M.R., VanFossen,A.L., Willquist,K., Lewis,D.L., Nichols,J.D., Goorissen,H.P., Mongodin,E.F., Nelson,K.E., van Niel,E.W., Stams,A.J., Ward,D.E., de Vos,W.M., van der Oost,J., Kelly,R.M. and Kengen,S.W. (2008) Appl. Environ. Microbiol. 74 (21), 6720-6729.
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A. and Richardson,P. (2007) Direct submission GenBank.