ISSdi1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY442225 ND Streptomyces diastaticus
Streptomyces diastaticus 108
DNA section
IS Length : 1789 bp

Ends


IR Length : 26

IRL : GGACGCTGTTGGTTTATTCGGTCCCTCGCGTGACGTCGGTCTCCACGATC
IRR : GGACGCTGTTGGTTTATTCGGTCCCTGCTTGTGCCCCGTCGAGCGTCATC

Insertion site


Left flankDirect repeatRight flankDR Length
GGGGGCCGGCCCTTGCGGGACCGGCCC5

DNA sequence

GGACGCTGTTGGTTTATTCGGTCCCTCGCGTGACGTCGGTCTCCACGATCCGGTTGTGGTCGTGGAGACCGACGTTGTTGTGTGGGGTGGGTGTCGATGT
CGATGCGTCCGAGTGGGCCGGGGGAGATTCCGGCGGAGACGGTGCGGGTGGCCCGGGCGGCGTTTGCGAAGGGAAGCCTGGCGATCCGGGTCCGGGACGA
GCTGGGGCCGATGTTCCGGGACGAGGACTTCGCGGATCTGTTCGCCTCACGAGGCCGGCCTGCCTGGTCTCCGGCCGGTCTGGCGCTGGTGTCGGTGCTC
CAGTTCGTGGACGGGCTGACCGACCGCCAGGCCGCGGAAGCGGTGCGGGCGCGGATCGACTTCAAGTACGCCCTCGGGCTGGAACTGGGCGATCCCGGCT
TCGACTTCTCGGTGCTGTCGGAGTTCAGGGACCGGCTGGCCGGGGCCGATGGAGGGCGCCGGGTCATGGACGGTGTGCTGGTGGCAGCCCGCGAGAAGGG
GCTGCTCAAGAGCGCGGGCCGGGCCCGCACCGACTCCACGCACATCTTGTCCTCGGCACGGCAGCTGAACTGGCTGGAGCTGGTCGCGGAGACGCTGCGA
TCGGCTCTGAACGCACTGGCCCAGGCTGCCCCCGGCTGGCTGGCCGAAGCCGCCGAGCCGGACTGGTTCCGGCACTACGCGACCCGGGCCGAGGAGTCCC
GGTTCCCCAAGGGCCGTGCCAGGCGGGACGAGGTGGGCCTGCGGATCGGCAGGGACGGGATGCGGCTGCTGGAGGAGGTCTTCGCCACCGTTGCACCGCA
CCGGCTTCGCGCACTCGATGAGGTGGAGATCCTGCGGCAGGTCTGGGTCCAGCACTTCCACATGGTGGAGGGCGAGGTGGCCAGGCGGGACCCAAAAGAC
CGTCCGCCGGGCATGATGCGCCTGGTCACCCCGTATGACCGCGAGGCCCGTGGCAGCGTGAAGCGGGACATCATGTGGGACGGCTACAAGGTCCATCTCA
CCGAGATCTGCGAGGCGGACGCCCCGAACCTGATCACGAACGTGGCCACCACCGTCGCCACCGTCTCGGACAGCGTGATGAGCCAGTCGATCCACGCGGG
CCTCGCCGACCGCGACTGCCTGCCCGGCGAACACTGGGTCGATGCCGGTTATCCCACCGCCACTCAAGTCCTGGCCGCCCGCACCGAGCATGGCGTCGCG
CTGCACGGGCCCATGGCTGCCAACACGTCCGCCCAGTCCGCGGGCCCCTACGGCCTGGACGCATTCACCGTCGACTGGGACCAGCAGCAGGTGGCCTGCC
CCGGCGGCGTCACCACGACCCAGTGGTATCCGCGCACGGACTCCAAGGGCCTCGCGGTCATCCGCGTGCGGTTCCGCCACAGCGAGTGTCGCCCCTGTCC
CCACCGGCACGAGTGCGTGGGCTCGGCTACCGGCCAGCGCCGGGAGATCATGCTGCGTCACCGGGAGGAACACGAGATCATCCGACACAGCCGCGCCGAG
CAGCAAACCGATGCCTGGAAGGACCGTTACAAGATCCGTGCCGGGGTCGAGGGCAGCATCTCCCAAGCAGTCGGGCGCTGCGGCCTGCGCAGATCCCGCT
ACCGGGGCCTGACAAAGACCAGCCTCCAGCACCAGCTCACCGGAGCCGCGATCAACCTTGCCCGCATCGACGCCCACCTCACCGGCACACCCCGAGCCCG
CACCCGCACCAGCCACTTCGCAGCACTGTGCCCCGCCGAGATGACGCTCGACGGGGCACAAGCAGGGACCGAATAAACCAACAGCGTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1680 bp559 aa971776+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSMRPSGPGEIPAETVRVARAAFAKGSLAIRVRDELGPMFRDEDFADLFASRGRPAWSPAGLALVSVLQFVDGLTDRQAAEAVRARIDFKYALGLELGDP
GFDFSVLSEFRDRLAGADGGRRVMDGVLVAAREKGLLKSAGRARTDSTHILSSARQLNWLELVAETLRSALNALAQAAPGWLAEAAEPDWFRHYATRAEE
SRFPKGRARRDEVGLRIGRDGMRLLEEVFATVAPHRLRALDEVEILRQVWVQHFHMVEGEVARRDPKDRPPGMMRLVTPYDREARGSVKRDIMWDGYKVH
LTEICEADAPNLITNVATTVATVSDSVMSQSIHAGLADRDCLPGEHWVDAGYPTATQVLAARTEHGVALHGPMAANTSAQSAGPYGLDAFTVDWDQQQVA
CPGGVTTTQWYPRTDSKGLAVIRVRFRHSECRPCPHRHECVGSATGQRREIMLRHREEHEIIRHSRAEQQTDAWKDRYKIRAGVEGSISQAVGRCGLRRS
RYRGLTKTSLQHQLTGAAINLARIDAHLTGTPRARTRTSHFAALCPAEMTLDGAQAGTE

 

Blast result :
Comments
ISSdi1 is 63% aa similar to ISAcma45.
References
1] ISfinder annotation (2010)
2] Seco,E.M., Perez-Zuniga,F.J., Rolon,M.S. and Malpartida,F.(2004) Chem. Biol. 11 (3), 357-366