ISRel20

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007762 ND Rhizobium etli
Rhizobium etli CFN 42 plasmid p42a
DNA section
IS Length : 930 bp

Ends


IR Length : 15/16

IRL : GAGCCCGATTTAAAAGAAGTTGAGCGATAACAGTCAGTTGTGATTCCCTA
IRR : GAGCCCGATTCAAAAGTTCATTCGTATATCCAATACCTTGCGATGCGCCT

Insertion site


Left flankDirect repeatRight flankDR Length
CAATGCCTGATTAGGTGAAA0
ATCCCTAGGATTAGATATCTGGA3

DNA sequence

GAGCCCGATTTAAAAGAAGTTGAGCGATAACAGTCAGTTGTGATTCCCTATTGGTGCTAAATCAAATGGGGTTTCGATGAGCTGGACTGCTATCGCTCGC
CGTGAGCATAACCGAGACGTGCTTCGTTTTCCAAGTGATTTGAAGGACCGGGAATGGGCGTTGATCAAACCGCTGATCCCGCCAGCGCGTCGTGGCGGGC
GGCGTCGGACGACGAATATGCGCTCGGTCGCGGAGGCGATCCTCTATATCGCCTCGAGCGGCTGCCAATGGCGCATACTGCCGGGCGATTTTCCGCCGGT
TTCGACAGTGCGCGGTTATTTTTATGCTTGGCGCGCGATCGGACTGTGGCAGAGCATCAACCAGCTTCTGGTGATGGCGGCGCGGGAAATCGAGGGACGG
GAGGCGCAACCGACGGCAGGGATTATCGACAGCCAAAGCGTCAAGGCCACGCAAAGCGGCGGAATATCCGGCTATGATGCAGGCAAGAAGATTAAGGGCC
GCAAGCGTCAGATTGTCACCGATACGCTTGGATTTCTGATCTTCGTGTTCATCCATGCTGCCGACATACAGGATCGCGACGGCGCACCCCATGTCCTCAA
GGCGATCCGCCGCCGTTTTCCGTGGCTGCGCCACATCTTCGCCGATGGTGGCTACGCCGGAGCCAAGTTGAGGCGAGCAATGAGCGGCCATGGTGACTGG
ACGATCGAAATCGTCAAGCGTTCGGATCACGCCAAGGGCTTCGTCGTCCTGCCCAAGAGATGGGTGGTGGAAAGGACTTTCGCCTGGCTTGGACGCTGCC
GCCGTCTCGCCAAGGATTGGGAGAAATCGATCGAAAGCGCAACCGCATGGGCGCAAATCGCTTCAATCAGAATGCTCATAAGGCGCATCGCAAGGTATTG
GATATACGAATGAACTTTTGAATCGGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
837 bp278 aa77913+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSWTAIARREHNRDVLRFPSDLKDREWALIKPLIPPARRGGRRRTTNMRSVAEAILYIASSGCQWRILPGDFPPVSTVRGYFYAWRAIGLWQSINQLLVM
AAREIEGREAQPTAGIIDSQSVKATQSGGISGYDAGKKIKGRKRQIVTDTLGFLIFVFIHAADIQDRDGAPHVLKAIRRRFPWLRHIFADGGYAGAKLRR
AMSGHGDWTIEIVKRSDHAKGFVVLPKRWVVERTFAWLGRCRRLAKDWEKSIESATAWAQIASIRMLIRRIARYWIYE

 

Blast result :
Comments
ISRel20 is 85% aa similar to ISGdi1.
References