ISRel20
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007762 | ND | Rhizobium etli | Rhizobium etli CFN 42 plasmid p42a |
DNA section
IS Length : 930 bp
Ends
IR Length : 15/16
IRL : GAGCCCGATTTAAAAGAAGTTGAGCGATAACAGTCAGTTGTGATTCCCTA
IRR : GAGCCCGATTCAAAAGTTCATTCGTATATCCAATACCTTGCGATGCGCCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAATGCCTGA | TTAGGTGAAA | 0 | |
ATCCCTAGGA | TTA | GATATCTGGA | 3 |
DNA sequence
GAGCCCGATTTAAAAGAAGTTGAGCGATAACAGTCAGTTGTGATTCCCTATTGGTGCTAAATCAAATGGGGTTTCGATGAGCTGGACTGCTATCGCTCGC
CGTGAGCATAACCGAGACGTGCTTCGTTTTCCAAGTGATTTGAAGGACCGGGAATGGGCGTTGATCAAACCGCTGATCCCGCCAGCGCGTCGTGGCGGGC
GGCGTCGGACGACGAATATGCGCTCGGTCGCGGAGGCGATCCTCTATATCGCCTCGAGCGGCTGCCAATGGCGCATACTGCCGGGCGATTTTCCGCCGGT
TTCGACAGTGCGCGGTTATTTTTATGCTTGGCGCGCGATCGGACTGTGGCAGAGCATCAACCAGCTTCTGGTGATGGCGGCGCGGGAAATCGAGGGACGG
GAGGCGCAACCGACGGCAGGGATTATCGACAGCCAAAGCGTCAAGGCCACGCAAAGCGGCGGAATATCCGGCTATGATGCAGGCAAGAAGATTAAGGGCC
GCAAGCGTCAGATTGTCACCGATACGCTTGGATTTCTGATCTTCGTGTTCATCCATGCTGCCGACATACAGGATCGCGACGGCGCACCCCATGTCCTCAA
GGCGATCCGCCGCCGTTTTCCGTGGCTGCGCCACATCTTCGCCGATGGTGGCTACGCCGGAGCCAAGTTGAGGCGAGCAATGAGCGGCCATGGTGACTGG
ACGATCGAAATCGTCAAGCGTTCGGATCACGCCAAGGGCTTCGTCGTCCTGCCCAAGAGATGGGTGGTGGAAAGGACTTTCGCCTGGCTTGGACGCTGCC
GCCGTCTCGCCAAGGATTGGGAGAAATCGATCGAAAGCGCAACCGCATGGGCGCAAATCGCTTCAATCAGAATGCTCATAAGGCGCATCGCAAGGTATTG
GATATACGAATGAACTTTTGAATCGGGCTC
CGTGAGCATAACCGAGACGTGCTTCGTTTTCCAAGTGATTTGAAGGACCGGGAATGGGCGTTGATCAAACCGCTGATCCCGCCAGCGCGTCGTGGCGGGC
GGCGTCGGACGACGAATATGCGCTCGGTCGCGGAGGCGATCCTCTATATCGCCTCGAGCGGCTGCCAATGGCGCATACTGCCGGGCGATTTTCCGCCGGT
TTCGACAGTGCGCGGTTATTTTTATGCTTGGCGCGCGATCGGACTGTGGCAGAGCATCAACCAGCTTCTGGTGATGGCGGCGCGGGAAATCGAGGGACGG
GAGGCGCAACCGACGGCAGGGATTATCGACAGCCAAAGCGTCAAGGCCACGCAAAGCGGCGGAATATCCGGCTATGATGCAGGCAAGAAGATTAAGGGCC
GCAAGCGTCAGATTGTCACCGATACGCTTGGATTTCTGATCTTCGTGTTCATCCATGCTGCCGACATACAGGATCGCGACGGCGCACCCCATGTCCTCAA
GGCGATCCGCCGCCGTTTTCCGTGGCTGCGCCACATCTTCGCCGATGGTGGCTACGCCGGAGCCAAGTTGAGGCGAGCAATGAGCGGCCATGGTGACTGG
ACGATCGAAATCGTCAAGCGTTCGGATCACGCCAAGGGCTTCGTCGTCCTGCCCAAGAGATGGGTGGTGGAAAGGACTTTCGCCTGGCTTGGACGCTGCC
GCCGTCTCGCCAAGGATTGGGAGAAATCGATCGAAAGCGCAACCGCATGGGCGCAAATCGCTTCAATCAGAATGCTCATAAGGCGCATCGCAAGGTATTG
GATATACGAATGAACTTTTGAATCGGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
837 bp | 278 aa | 77 | 913 | + | No |
Chemistry : DDE
ORF sequence :
MSWTAIARREHNRDVLRFPSDLKDREWALIKPLIPPARRGGRRRTTNMRSVAEAILYIASSGCQWRILPGDFPPVSTVRGYFYAWRAIGLWQSINQLLVM
AAREIEGREAQPTAGIIDSQSVKATQSGGISGYDAGKKIKGRKRQIVTDTLGFLIFVFIHAADIQDRDGAPHVLKAIRRRFPWLRHIFADGGYAGAKLRR
AMSGHGDWTIEIVKRSDHAKGFVVLPKRWVVERTFAWLGRCRRLAKDWEKSIESATAWAQIASIRMLIRRIARYWIYE
AAREIEGREAQPTAGIIDSQSVKATQSGGISGYDAGKKIKGRKRQIVTDTLGFLIFVFIHAADIQDRDGAPHVLKAIRRRFPWLRHIFADGGYAGAKLRR
AMSGHGDWTIEIVKRSDHAKGFVVLPKRWVVERTFAWLGRCRRLAKDWEKSIESATAWAQIASIRMLIRRIARYWIYE
Blast result :
Comments
ISRel20 is 85% aa similar to ISGdi1.
References