ISRel15

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004041 ND Rhizobium etli
Rhizobium etli CFN 42 symbiotic plasmid p42d
Rhizobium etli CFN 42
DNA section
IS Length : 2497 bp

Ends


IR Length : 19/28

IRL : GTAAGCGACAAGCAGACCCCATCTGGCGAAGCAGCTTAGCGGTCGGCTAT
IRR : GTAAACGGCAAGCTGAGACCGTTCAGCGCGCGTAATTCCACGGCATGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGGTCCGTCTCTGCAAGGAGCCTGTCAA8
AGGCAAGGCAGCATCAGGGAAATCTGCC8
GACTGAAAGTCGTCCCAGAGATCCGTCT8
AGCCCCAGGCGGTAAAGCCCGACAGGCC8
TCCAGCTCATGATACGACGGCC2
CGGATACGACGCTCATGATG0

DNA sequence

GTAAGCGACAAGCAGACCCCATCTGGCGAAGCAGCTTAGCGGTCGGCTATCGGTAGCGGACACGATGAACTGCTGTGAGCTTCTATGTCTGCGCCTAGCT
CTGGAACTAGAACTTTTCATATGATCGAGGCTGTTGCGGACCGATTTGAGGGCGCGCCTCGGCAGCTTCGGCGGCGCTGGTCGGACGATTTTAAAGCGCG
TGCAGTTGCAGAGGCACTCGAGCCTGGCTCGAGCGTGTCAGCGATCGCACGTCGGCTTGATATCCATCCGTCACAACTGTTTGGCTGGCGTCGCGCCGCC
CTGGGCTCTCACAAGGAGAACATAGCGCCGATCGGTCATAAGGCAGTCACGCCATCTGCCGACGGCGCGATAATCGAAGTTCTGATTGGCGATGTCGTCG
TGCGCGCTCCCGCCGATGTGGACGAAGCTCATCTGCAGCGTGTCATCCGGGCAGTTCGCTCAGCATGATCCCCGCAGGTGTAAAGGTCTTCCTCGCCAGT
CACCCCATCGACTTTCGTAAAGGGCCGGACAGTTTGCTGTCGCTGGTGCGCGACGCCGGCAGTGATCCGTTCAATGGCTCGCTTTATGTCTTCCGGGCGA
AGCGGGCGGACCGGGTCAAGATCGTCTGGTGGGATGGATCAGGGGTCTGCCTCTATTCCAAGCGGTTGGAGAAGGCGCAGTTCTGCTGGCCGCGGATCGG
CCACAACCGGGTGCAGCTCAATCACGCTCAGCTCATGGCGCTCGTTGACGGCATGGACTGGAAACGGGTGCGCTCAGTGGCGGTGAAGCCGCCGGAGATT
GTTGGGTAAAGGGCTGCGGCGAAGTGAATCAACCGCCTGAAAAGGCAGGAAAACCGGAGCAAATTGTGCTCTGGTAGGCCTCATGACGCCGCCCGATCTA
CAGCTCCCGGATGATGTAGAGACCCTGAAAGCCATGGTCCTTGCCATGGCCGAGAAGGCAGCGCGCACCGATGCTCTCGAGAGCGAGGTCGCAGACCTGA
AAGCCAGAAACGCCGATGCCGACGAACGCATCGAGCGACTGACCCAGATCCTGAAAGCCTTCGATCGCGCCCGCTTCGGCCGGCAATCGGAAAAGCTCGG
CTCTCCGGGCATCGATGATGAGCAGCAGGCTTTTGTCTTCGAGGAAATCGAGACCGGTATCTCGGCAATCCGAGCCAAGGTAAACAAGGGTGCCGCTGAT
CCCGATGCGAAACGTGCACCCCGGCCGCGCAAGGGCTTTGCACCTCATCTGGAACGAGTCGAAGTGGTGATCGAGCCGGATGAACTGCACGAACACATCG
GCAAACAGAAGGTGCTGATCGGAGAAGACGTCTCGGAGCGACTGGACGTCGTGCCGGCGAAGTTCCGCGTCATCGTCACCCGGCGGCCGAAGTATGCCTT
CAAGAACGAAGACGGCGTCATCCAGGCAGCCGCGCCCGCGCACATCATCGAGGGTGGCATTCCAACGGAAGCGCTTCTCGCCCAGATCGCTGTCTCGAAG
TATGCAGATGGCCTTCCGCTCTATCGACAGGAGGCAATCTATGCACGCGACAAGGTTGAGCTTGACCGGAAGCTGATGGCCCAATGGATGGGCAAGCTCG
GCTACGAGCTCGATATCCTGGCCGACTACATCCTCGCCGAGATCAAGAAGGCTGAGCGCATCTTTGCGGACGAGACGACATTGCCAACGCTCGCGCCCGG
ATCCGGATCGGCAAAGACAGCCTGGCTATGGGCTTATGCGAGGGATGATAGACCCTTTGGCGGTAGTGGCCCGCCGATGGTCGCCTATCGCTTCGAAGAT
AGCCGCGCTGGCGATCGCGTCGCCCGGCATCTGAATGGCTATCGCGGTATCCTTCAGGTGGACGGGCATGGTGCCTACAACAAGCTTGCCCGATCTGACG
GCGGCAATGACGGCGTGATGCTGGCCGGCTGCTGGTCCCATAGCAGGCGCAAGTTCTACGAACTCCACGCCTCGGACAGCTCCAAGATAGCCAGCGAGAC
GGTGGAATTGATGGCAAAGCTCTGGGAGGTGGAAGCGGCGGCCCGGGGGCAGAGCCCTGACGCGCGTGTCGCGGCACGTCAGGCGACATCTGCTGCAGTT
GTCACTGAGCTCTTCGCCCTGTGGCAAAAGACCCTGCCGCGGATCTCCGGCAAGTCGAAGCTCGCAGAAGCGATCCGCTATGCCACCTCGCGTCGCTCCA
TCTTCGAACGCTTCCTTACCGACGGCCGCATCGAGCTCGACAGCAACATCGTTGAGCGTGCCATCAGGCCCCAGACGATCACGAGAAAGAACAGTCTCTT
CGCCGGCAGCGATGGCGGTGGAAGGACCTGGGCGACTATCGCCACGCTCCTTCAGACGGCGAAGATGAACAACGTGGACCCGCAGGCTTGGCTCACCCAA
ACACTTGAGCGGATCGCCAACGGCTGGCCGAGCAGCGATCTCGATGCACTCATGCCGTGGAATTACGCGCGCTGAACGGTCTCAGCTTGCCGTTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
384 bp127 aa85468+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MSAPSSGTRTFHMIEAVADRFEGAPRQLRRRWSDDFKARAVAEALEPGSSVSAIARRLDIHPSQLFGWRRAALGSHKENIAPIGHKAVTPSADGAIIEVL
IGDVVVRAPADVDEAHLQRVIRAVRSA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
345 bp114 aa465809+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MIPAGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADRVKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRVQLNHAQLMALVDGMDWK
RVRSVAVKPPEIVG

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1593 bp530 aa8832475+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTPPDLQLPDDVETLKAMVLAMAEKAARTDALESEVADLKARNADADERIERLTQILKAFDRARFGRQSEKLGSPGIDDEQQAFVFEEIETGISAIRAKV
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDVSERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYILAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGCWSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRIELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR

 

Blast result :
Comments
ISRel15 is 76% (orfA), 98% (orfB) and 91% (orfC, the transposase) aa similar to IRle3.
References