ISRel15
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004041 | ND | Rhizobium etli | Rhizobium etli CFN 42 symbiotic plasmid p42d Rhizobium etli CFN 42 |
DNA section
IS Length : 2497 bp
Ends
IR Length : 19/28
IRL : GTAAGCGACAAGCAGACCCCATCTGGCGAAGCAGCTTAGCGGTCGGCTAT
IRR : GTAAACGGCAAGCTGAGACCGTTCAGCGCGCGTAATTCCACGGCATGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGTCCGTCT | CTGCAAGG | AGCCTGTCAA | 8 |
AGGCAAGGCA | GCATCAGG | GAAATCTGCC | 8 |
GACTGAAAGT | CGTCCCAG | AGATCCGTCT | 8 |
AGCCCCAGGC | GGTAAAGC | CCGACAGGCC | 8 |
TCCAGCTCAT | GA | TACGACGGCC | 2 |
CGGATACGAC | GCTCATGATG | 0 |
DNA sequence
GTAAGCGACAAGCAGACCCCATCTGGCGAAGCAGCTTAGCGGTCGGCTATCGGTAGCGGACACGATGAACTGCTGTGAGCTTCTATGTCTGCGCCTAGCT
CTGGAACTAGAACTTTTCATATGATCGAGGCTGTTGCGGACCGATTTGAGGGCGCGCCTCGGCAGCTTCGGCGGCGCTGGTCGGACGATTTTAAAGCGCG
TGCAGTTGCAGAGGCACTCGAGCCTGGCTCGAGCGTGTCAGCGATCGCACGTCGGCTTGATATCCATCCGTCACAACTGTTTGGCTGGCGTCGCGCCGCC
CTGGGCTCTCACAAGGAGAACATAGCGCCGATCGGTCATAAGGCAGTCACGCCATCTGCCGACGGCGCGATAATCGAAGTTCTGATTGGCGATGTCGTCG
TGCGCGCTCCCGCCGATGTGGACGAAGCTCATCTGCAGCGTGTCATCCGGGCAGTTCGCTCAGCATGATCCCCGCAGGTGTAAAGGTCTTCCTCGCCAGT
CACCCCATCGACTTTCGTAAAGGGCCGGACAGTTTGCTGTCGCTGGTGCGCGACGCCGGCAGTGATCCGTTCAATGGCTCGCTTTATGTCTTCCGGGCGA
AGCGGGCGGACCGGGTCAAGATCGTCTGGTGGGATGGATCAGGGGTCTGCCTCTATTCCAAGCGGTTGGAGAAGGCGCAGTTCTGCTGGCCGCGGATCGG
CCACAACCGGGTGCAGCTCAATCACGCTCAGCTCATGGCGCTCGTTGACGGCATGGACTGGAAACGGGTGCGCTCAGTGGCGGTGAAGCCGCCGGAGATT
GTTGGGTAAAGGGCTGCGGCGAAGTGAATCAACCGCCTGAAAAGGCAGGAAAACCGGAGCAAATTGTGCTCTGGTAGGCCTCATGACGCCGCCCGATCTA
CAGCTCCCGGATGATGTAGAGACCCTGAAAGCCATGGTCCTTGCCATGGCCGAGAAGGCAGCGCGCACCGATGCTCTCGAGAGCGAGGTCGCAGACCTGA
AAGCCAGAAACGCCGATGCCGACGAACGCATCGAGCGACTGACCCAGATCCTGAAAGCCTTCGATCGCGCCCGCTTCGGCCGGCAATCGGAAAAGCTCGG
CTCTCCGGGCATCGATGATGAGCAGCAGGCTTTTGTCTTCGAGGAAATCGAGACCGGTATCTCGGCAATCCGAGCCAAGGTAAACAAGGGTGCCGCTGAT
CCCGATGCGAAACGTGCACCCCGGCCGCGCAAGGGCTTTGCACCTCATCTGGAACGAGTCGAAGTGGTGATCGAGCCGGATGAACTGCACGAACACATCG
GCAAACAGAAGGTGCTGATCGGAGAAGACGTCTCGGAGCGACTGGACGTCGTGCCGGCGAAGTTCCGCGTCATCGTCACCCGGCGGCCGAAGTATGCCTT
CAAGAACGAAGACGGCGTCATCCAGGCAGCCGCGCCCGCGCACATCATCGAGGGTGGCATTCCAACGGAAGCGCTTCTCGCCCAGATCGCTGTCTCGAAG
TATGCAGATGGCCTTCCGCTCTATCGACAGGAGGCAATCTATGCACGCGACAAGGTTGAGCTTGACCGGAAGCTGATGGCCCAATGGATGGGCAAGCTCG
GCTACGAGCTCGATATCCTGGCCGACTACATCCTCGCCGAGATCAAGAAGGCTGAGCGCATCTTTGCGGACGAGACGACATTGCCAACGCTCGCGCCCGG
ATCCGGATCGGCAAAGACAGCCTGGCTATGGGCTTATGCGAGGGATGATAGACCCTTTGGCGGTAGTGGCCCGCCGATGGTCGCCTATCGCTTCGAAGAT
AGCCGCGCTGGCGATCGCGTCGCCCGGCATCTGAATGGCTATCGCGGTATCCTTCAGGTGGACGGGCATGGTGCCTACAACAAGCTTGCCCGATCTGACG
GCGGCAATGACGGCGTGATGCTGGCCGGCTGCTGGTCCCATAGCAGGCGCAAGTTCTACGAACTCCACGCCTCGGACAGCTCCAAGATAGCCAGCGAGAC
GGTGGAATTGATGGCAAAGCTCTGGGAGGTGGAAGCGGCGGCCCGGGGGCAGAGCCCTGACGCGCGTGTCGCGGCACGTCAGGCGACATCTGCTGCAGTT
GTCACTGAGCTCTTCGCCCTGTGGCAAAAGACCCTGCCGCGGATCTCCGGCAAGTCGAAGCTCGCAGAAGCGATCCGCTATGCCACCTCGCGTCGCTCCA
TCTTCGAACGCTTCCTTACCGACGGCCGCATCGAGCTCGACAGCAACATCGTTGAGCGTGCCATCAGGCCCCAGACGATCACGAGAAAGAACAGTCTCTT
CGCCGGCAGCGATGGCGGTGGAAGGACCTGGGCGACTATCGCCACGCTCCTTCAGACGGCGAAGATGAACAACGTGGACCCGCAGGCTTGGCTCACCCAA
ACACTTGAGCGGATCGCCAACGGCTGGCCGAGCAGCGATCTCGATGCACTCATGCCGTGGAATTACGCGCGCTGAACGGTCTCAGCTTGCCGTTTAC
CTGGAACTAGAACTTTTCATATGATCGAGGCTGTTGCGGACCGATTTGAGGGCGCGCCTCGGCAGCTTCGGCGGCGCTGGTCGGACGATTTTAAAGCGCG
TGCAGTTGCAGAGGCACTCGAGCCTGGCTCGAGCGTGTCAGCGATCGCACGTCGGCTTGATATCCATCCGTCACAACTGTTTGGCTGGCGTCGCGCCGCC
CTGGGCTCTCACAAGGAGAACATAGCGCCGATCGGTCATAAGGCAGTCACGCCATCTGCCGACGGCGCGATAATCGAAGTTCTGATTGGCGATGTCGTCG
TGCGCGCTCCCGCCGATGTGGACGAAGCTCATCTGCAGCGTGTCATCCGGGCAGTTCGCTCAGCATGATCCCCGCAGGTGTAAAGGTCTTCCTCGCCAGT
CACCCCATCGACTTTCGTAAAGGGCCGGACAGTTTGCTGTCGCTGGTGCGCGACGCCGGCAGTGATCCGTTCAATGGCTCGCTTTATGTCTTCCGGGCGA
AGCGGGCGGACCGGGTCAAGATCGTCTGGTGGGATGGATCAGGGGTCTGCCTCTATTCCAAGCGGTTGGAGAAGGCGCAGTTCTGCTGGCCGCGGATCGG
CCACAACCGGGTGCAGCTCAATCACGCTCAGCTCATGGCGCTCGTTGACGGCATGGACTGGAAACGGGTGCGCTCAGTGGCGGTGAAGCCGCCGGAGATT
GTTGGGTAAAGGGCTGCGGCGAAGTGAATCAACCGCCTGAAAAGGCAGGAAAACCGGAGCAAATTGTGCTCTGGTAGGCCTCATGACGCCGCCCGATCTA
CAGCTCCCGGATGATGTAGAGACCCTGAAAGCCATGGTCCTTGCCATGGCCGAGAAGGCAGCGCGCACCGATGCTCTCGAGAGCGAGGTCGCAGACCTGA
AAGCCAGAAACGCCGATGCCGACGAACGCATCGAGCGACTGACCCAGATCCTGAAAGCCTTCGATCGCGCCCGCTTCGGCCGGCAATCGGAAAAGCTCGG
CTCTCCGGGCATCGATGATGAGCAGCAGGCTTTTGTCTTCGAGGAAATCGAGACCGGTATCTCGGCAATCCGAGCCAAGGTAAACAAGGGTGCCGCTGAT
CCCGATGCGAAACGTGCACCCCGGCCGCGCAAGGGCTTTGCACCTCATCTGGAACGAGTCGAAGTGGTGATCGAGCCGGATGAACTGCACGAACACATCG
GCAAACAGAAGGTGCTGATCGGAGAAGACGTCTCGGAGCGACTGGACGTCGTGCCGGCGAAGTTCCGCGTCATCGTCACCCGGCGGCCGAAGTATGCCTT
CAAGAACGAAGACGGCGTCATCCAGGCAGCCGCGCCCGCGCACATCATCGAGGGTGGCATTCCAACGGAAGCGCTTCTCGCCCAGATCGCTGTCTCGAAG
TATGCAGATGGCCTTCCGCTCTATCGACAGGAGGCAATCTATGCACGCGACAAGGTTGAGCTTGACCGGAAGCTGATGGCCCAATGGATGGGCAAGCTCG
GCTACGAGCTCGATATCCTGGCCGACTACATCCTCGCCGAGATCAAGAAGGCTGAGCGCATCTTTGCGGACGAGACGACATTGCCAACGCTCGCGCCCGG
ATCCGGATCGGCAAAGACAGCCTGGCTATGGGCTTATGCGAGGGATGATAGACCCTTTGGCGGTAGTGGCCCGCCGATGGTCGCCTATCGCTTCGAAGAT
AGCCGCGCTGGCGATCGCGTCGCCCGGCATCTGAATGGCTATCGCGGTATCCTTCAGGTGGACGGGCATGGTGCCTACAACAAGCTTGCCCGATCTGACG
GCGGCAATGACGGCGTGATGCTGGCCGGCTGCTGGTCCCATAGCAGGCGCAAGTTCTACGAACTCCACGCCTCGGACAGCTCCAAGATAGCCAGCGAGAC
GGTGGAATTGATGGCAAAGCTCTGGGAGGTGGAAGCGGCGGCCCGGGGGCAGAGCCCTGACGCGCGTGTCGCGGCACGTCAGGCGACATCTGCTGCAGTT
GTCACTGAGCTCTTCGCCCTGTGGCAAAAGACCCTGCCGCGGATCTCCGGCAAGTCGAAGCTCGCAGAAGCGATCCGCTATGCCACCTCGCGTCGCTCCA
TCTTCGAACGCTTCCTTACCGACGGCCGCATCGAGCTCGACAGCAACATCGTTGAGCGTGCCATCAGGCCCCAGACGATCACGAGAAAGAACAGTCTCTT
CGCCGGCAGCGATGGCGGTGGAAGGACCTGGGCGACTATCGCCACGCTCCTTCAGACGGCGAAGATGAACAACGTGGACCCGCAGGCTTGGCTCACCCAA
ACACTTGAGCGGATCGCCAACGGCTGGCCGAGCAGCGATCTCGATGCACTCATGCCGTGGAATTACGCGCGCTGAACGGTCTCAGCTTGCCGTTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
384 bp | 127 aa | 85 | 468 | + | No |
AG : IS66 TnpA
ORF sequence :
MSAPSSGTRTFHMIEAVADRFEGAPRQLRRRWSDDFKARAVAEALEPGSSVSAIARRLDIHPSQLFGWRRAALGSHKENIAPIGHKAVTPSADGAIIEVL
IGDVVVRAPADVDEAHLQRVIRAVRSA
IGDVVVRAPADVDEAHLQRVIRAVRSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
345 bp | 114 aa | 465 | 809 | + | No |
AG : IS66 TnpB
ORF sequence :
MIPAGVKVFLASHPIDFRKGPDSLLSLVRDAGSDPFNGSLYVFRAKRADRVKIVWWDGSGVCLYSKRLEKAQFCWPRIGHNRVQLNHAQLMALVDGMDWK
RVRSVAVKPPEIVG
RVRSVAVKPPEIVG
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1593 bp | 530 aa | 883 | 2475 | + | No |
Chemistry : DDE
ORF sequence :
MTPPDLQLPDDVETLKAMVLAMAEKAARTDALESEVADLKARNADADERIERLTQILKAFDRARFGRQSEKLGSPGIDDEQQAFVFEEIETGISAIRAKV
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDVSERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYILAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGCWSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRIELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR
NKGAADPDAKRAPRPRKGFAPHLERVEVVIEPDELHEHIGKQKVLIGEDVSERLDVVPAKFRVIVTRRPKYAFKNEDGVIQAAAPAHIIEGGIPTEALLA
QIAVSKYADGLPLYRQEAIYARDKVELDRKLMAQWMGKLGYELDILADYILAEIKKAERIFADETTLPTLAPGSGSAKTAWLWAYARDDRPFGGSGPPMV
AYRFEDSRAGDRVARHLNGYRGILQVDGHGAYNKLARSDGGNDGVMLAGCWSHSRRKFYELHASDSSKIASETVELMAKLWEVEAAARGQSPDARVAARQ
ATSAAVVTELFALWQKTLPRISGKSKLAEAIRYATSRRSIFERFLTDGRIELDSNIVERAIRPQTITRKNSLFAGSDGGGRTWATIATLLQTAKMNNVDP
QAWLTQTLERIANGWPSSDLDALMPWNYAR
Blast result :
Comments
ISRel15 is 76% (orfA), 98% (orfB) and 91% (orfC, the transposase) aa similar to IRle3.
References