ISRel5

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004041 ND Rhizobium etli
Rhizobium etli CFN 42 symbiotic plasmid p42d
DNA section
IS Length : 2587 bp

Ends


IR Length : 24/31

IRL : TGAGATTCAGCGTCAATCAGGATGAGACTCGCGCCGGGGTGTGACGGAGT
IRR : TGAGACGCTTGCGACAATCTGGATGAGATTCTTAGGTCGCGGTCGGGATC

Insertion site


Left flankDirect repeatRight flankDR Length
GCGATCTCGATCCTGATTGC0

DNA sequence

TGAGATTCAGCGTCAATCAGGATGAGACTCGCGCCGGGGTGTGACGGAGTGAGGGCGTAGCCCGATCGTAGTCATACCCCGGCGTGGCGCAGATTTTCGG
CGTCTCATGATCGCGGTCGGTCCGGTACATTTGCGGTTTTCTGGATTGGAGAACCAGTTTGTGCCGGGTCGCCATTTAACCGATCATCAGATGAGACTCT
TCATGAAGTACCGACAAACGCATTCCGTAGAGGTCGCCGCGTCAAAAGCGTCGATCAGCCGAGCCACGGCATACCGCCTCGCCAAGGAGGTACAACTGCC
TTCTCAGAGCAAAGCGCCGCGCGGACGCCGCCGCCCTGATCCCTTAGAGCTGATATTCGAGACCGAAGTCGTCCCGCTCCTGAAGGCCGCACCCGGTATC
CGTGCCGTCGCTGTCTACAACGAGATGCTGCGCCGACATCCAGAACTCTCTGAAGGTATCCGCCGCACGCTTGAACGACGCATTCGGTCGTGGCGTGCTG
TCCATGGCGAAGCGCAGGGGGTCATCTTCCGCCAAACGCACGAGCCAGGCCGGTTGGGCCTTTCGGATTTTACCGACGCCAGCGGTCTTGGTGTGACCAT
CGCCGGCCAGCCGCTTGATCACCTGTTCTATCACTTCCGGCTTGTCTGGTCGGGCTTCGAACATGCCCATGTCATTCTCGGCGGCGAAAGCTTTGTCGCG
CTGGCTGAAGGGCTTCAAAATGCCCTGTGGTCCGTGGGAGGTACGCCGCTTTATCATCGAAGCGACAGCCTGTCGGCGGCATTCCGCAACCTCGACGCCG
ATGCCAAGGTCGATCTCACCCACCGATACGATCAGCTTTGCTCCCATTATCGAATGACGCCGACGCGCAACAACAAAGGCGTCGCGCATGAGAACGGCTC
TATCGAAAGCTCCCATGGCCATCTCAAGAACTCTGTTCATGACGCCCTGCTGATGCGGGGGGCCAAGGAATTCGACGACCTCAGTTCTTACCGCGCCTTT
GTCGATGACATCGTCAGCCGTCGCAACGCTGCCCATGGCAAGCGCATTGATGCTGAGCGATCCCATCTGCAGGCGCTGCCCGAGCGCCGGACCACGGACT
TCGAAGAGATTGTCGTTACGGTGTCCCGGACGGGCGGCTTCACCTTGCGCAAGGTCTTCTACACCGTGCCATCCCGCCTGATCGGCCACAGGTTAAGAGT
TCGCCTGTTCGACGATCGGCTGGATGTCTTTGTCGGCGGTACGCATCTGATGACGTTGCGCCGAGGACGCGGCCATCCCGACGGCCGACACGACCAGGTC
GTCAACTACCACCACGTCATCCATTCCCTGCGCAAAAAGCCGATGGCGCTCCGCGGCCTCGTTTATCGCGACAAGCTCTTCCCGCGTCAGGAATATCGCA
AGGCCTTCGAAGCCCTCATCGAGCATCTTCCCGACAAGCAGGCTTGCAAGATCACCGTCGAACTCCTGGCGCTCGCGCATGACCGTGGTTGCGAACGCGA
ACTTGCCGAAGAATTGGCCAGGATACTCGATGCTGGTGACTTACCCAATCTGGCTACCATGCGAGCGCTCTTCGGTCCGGATCCAGCCAAGCTGCCGACC
GTTCATGTGCAACTCGCATCGCTCAACGGTTATGAGGCCCTGATCGGGACGGGAGAAGCGGCATGAAGAACGCCCACGTTATCGATGAAGCACGCCTCGG
CATCATGCTCAACGAGCTCCGGCTGCCGACGATCAAAATGCTGTGGCCACGATTTGCCGAAGAGGCGGACCGGGAAGGATGGCCGGCAGCTCGCTTCCTG
TCGGCTATTGCCGAGCACGAGCTGGCAGAGCGTGCCAATCGCAGGATTGAACGGCATCTCGCCGAAGCGCACCTGCCGCCCGGAAAGACCTTAGACAGCT
TCGCCTTTGACGCTGTACCCATGATCTCGAAGGCGCAGGTCATGGCAATCACCGCCGGCGACAGCTGGCTTGCCAAGGGAGCTAACATCCTCATGTTCGG
TCCGCCCGGCGGAGGAAAGAGCCATCTTGCTGCTGCCATCGGCCTTGCGCTGATCGAGAACGGATGGCGGGTCCTGTTCACCCGGACCACCGATCTTGTG
CAGAAGCTTCAGGTCGCCCGAAGGGAACTGCAGCTTGAGTCTGCCATCGACAAACTCAACAGGTACGACTTGCTCATCCTCGATGACCTCGCCTACGTCA
CCAAGGACCAGGCGGAAACAAGCGTGCTATTCGAGCTGATCTCGGCACGATACGAGCACCGGTCGATCCTGATCACCGCCAACCAGCCGTTCGGAGAGTG
GAACCGGGTCTTTCCCGACCCTGCCATGACACTCGCAGCAGTCGACCGGCTCGTGCACCATGCCACGATCTTCGAGATGAACGTCGAAAGCTATCGCCGC
AGAACTGCGCTTGAGGAAAAACGCCAGCGCGGCCGACCGGCCTCGTTTGCGACAATCAGGACATCAACGCTGTCTGTCGCGGAGCGGCAATCAGAAAACG
ACGAAGAACTTGTCAGCGGCAATCAGCATGATAATTTGATCCCGACCGCGACCTAAGAATCTCATCCAGATTGTCGCAAGCGTCTCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1476 bp491 aa1911666+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRLFMKYRQTHSVEVAASKASISRATAYRLAKEVQLPSQSKAPRGRRRPDPLELIFETEVVPLLKAAPGIRAVAVYNEMLRRHPELSEGIRRTLERRIRS
WRAVHGEAQGVIFRQTHEPGRLGLSDFTDASGLGVTIAGQPLDHLFYHFRLVWSGFEHAHVILGGESFVALAEGLQNALWSVGGTPLYHRSDSLSAAFRN
LDADAKVDLTHRYDQLCSHYRMTPTRNNKGVAHENGSIESSHGHLKNSVHDALLMRGAKEFDDLSSYRAFVDDIVSRRNAAHGKRIDAERSHLQALPERR
TTDFEEIVVTVSRTGGFTLRKVFYTVPSRLIGHRLRVRLFDDRLDVFVGGTHLMTLRRGRGHPDGRHDQVVNYHHVIHSLRKKPMALRGLVYRDKLFPRQ
EYRKAFEALIEHLPDKQACKITVELLALAHDRGCERELAEELARILDAGDLPNLATMRALFGPDPAKLPTVHVQLASLNGYEALIGTGEAA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
894 bp297 aa16632556+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MKNAHVIDEARLGIMLNELRLPTIKMLWPRFAEEADREGWPAARFLSAIAEHELAERANRRIERHLAEAHLPPGKTLDSFAFDAVPMISKAQVMAITAGD
SWLAKGANILMFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIDKLNRYDLLILDDLAYVTKDQAETSVLFELISARYEHR
SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTALEEKRQRGRPASFATIRTSTLSVAERQSENDEELVSGNQHDNLIPTAT

 

Blast result :
Comments
ISRel5 ORFA (the transposase) is 72% aa similar to ISRm9 ORFA, and ISRel5 ORFB (helper of transposition) is 81% aa similar to ISAZo16 ORFB.
References