ISRel5
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004041 | ND | Rhizobium etli | Rhizobium etli CFN 42 symbiotic plasmid p42d |
DNA section
IS Length : 2587 bp
Ends
IR Length : 24/31
IRL : TGAGATTCAGCGTCAATCAGGATGAGACTCGCGCCGGGGTGTGACGGAGT
IRR : TGAGACGCTTGCGACAATCTGGATGAGATTCTTAGGTCGCGGTCGGGATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGATCTCGA | TCCTGATTGC | 0 |
DNA sequence
TGAGATTCAGCGTCAATCAGGATGAGACTCGCGCCGGGGTGTGACGGAGTGAGGGCGTAGCCCGATCGTAGTCATACCCCGGCGTGGCGCAGATTTTCGG
CGTCTCATGATCGCGGTCGGTCCGGTACATTTGCGGTTTTCTGGATTGGAGAACCAGTTTGTGCCGGGTCGCCATTTAACCGATCATCAGATGAGACTCT
TCATGAAGTACCGACAAACGCATTCCGTAGAGGTCGCCGCGTCAAAAGCGTCGATCAGCCGAGCCACGGCATACCGCCTCGCCAAGGAGGTACAACTGCC
TTCTCAGAGCAAAGCGCCGCGCGGACGCCGCCGCCCTGATCCCTTAGAGCTGATATTCGAGACCGAAGTCGTCCCGCTCCTGAAGGCCGCACCCGGTATC
CGTGCCGTCGCTGTCTACAACGAGATGCTGCGCCGACATCCAGAACTCTCTGAAGGTATCCGCCGCACGCTTGAACGACGCATTCGGTCGTGGCGTGCTG
TCCATGGCGAAGCGCAGGGGGTCATCTTCCGCCAAACGCACGAGCCAGGCCGGTTGGGCCTTTCGGATTTTACCGACGCCAGCGGTCTTGGTGTGACCAT
CGCCGGCCAGCCGCTTGATCACCTGTTCTATCACTTCCGGCTTGTCTGGTCGGGCTTCGAACATGCCCATGTCATTCTCGGCGGCGAAAGCTTTGTCGCG
CTGGCTGAAGGGCTTCAAAATGCCCTGTGGTCCGTGGGAGGTACGCCGCTTTATCATCGAAGCGACAGCCTGTCGGCGGCATTCCGCAACCTCGACGCCG
ATGCCAAGGTCGATCTCACCCACCGATACGATCAGCTTTGCTCCCATTATCGAATGACGCCGACGCGCAACAACAAAGGCGTCGCGCATGAGAACGGCTC
TATCGAAAGCTCCCATGGCCATCTCAAGAACTCTGTTCATGACGCCCTGCTGATGCGGGGGGCCAAGGAATTCGACGACCTCAGTTCTTACCGCGCCTTT
GTCGATGACATCGTCAGCCGTCGCAACGCTGCCCATGGCAAGCGCATTGATGCTGAGCGATCCCATCTGCAGGCGCTGCCCGAGCGCCGGACCACGGACT
TCGAAGAGATTGTCGTTACGGTGTCCCGGACGGGCGGCTTCACCTTGCGCAAGGTCTTCTACACCGTGCCATCCCGCCTGATCGGCCACAGGTTAAGAGT
TCGCCTGTTCGACGATCGGCTGGATGTCTTTGTCGGCGGTACGCATCTGATGACGTTGCGCCGAGGACGCGGCCATCCCGACGGCCGACACGACCAGGTC
GTCAACTACCACCACGTCATCCATTCCCTGCGCAAAAAGCCGATGGCGCTCCGCGGCCTCGTTTATCGCGACAAGCTCTTCCCGCGTCAGGAATATCGCA
AGGCCTTCGAAGCCCTCATCGAGCATCTTCCCGACAAGCAGGCTTGCAAGATCACCGTCGAACTCCTGGCGCTCGCGCATGACCGTGGTTGCGAACGCGA
ACTTGCCGAAGAATTGGCCAGGATACTCGATGCTGGTGACTTACCCAATCTGGCTACCATGCGAGCGCTCTTCGGTCCGGATCCAGCCAAGCTGCCGACC
GTTCATGTGCAACTCGCATCGCTCAACGGTTATGAGGCCCTGATCGGGACGGGAGAAGCGGCATGAAGAACGCCCACGTTATCGATGAAGCACGCCTCGG
CATCATGCTCAACGAGCTCCGGCTGCCGACGATCAAAATGCTGTGGCCACGATTTGCCGAAGAGGCGGACCGGGAAGGATGGCCGGCAGCTCGCTTCCTG
TCGGCTATTGCCGAGCACGAGCTGGCAGAGCGTGCCAATCGCAGGATTGAACGGCATCTCGCCGAAGCGCACCTGCCGCCCGGAAAGACCTTAGACAGCT
TCGCCTTTGACGCTGTACCCATGATCTCGAAGGCGCAGGTCATGGCAATCACCGCCGGCGACAGCTGGCTTGCCAAGGGAGCTAACATCCTCATGTTCGG
TCCGCCCGGCGGAGGAAAGAGCCATCTTGCTGCTGCCATCGGCCTTGCGCTGATCGAGAACGGATGGCGGGTCCTGTTCACCCGGACCACCGATCTTGTG
CAGAAGCTTCAGGTCGCCCGAAGGGAACTGCAGCTTGAGTCTGCCATCGACAAACTCAACAGGTACGACTTGCTCATCCTCGATGACCTCGCCTACGTCA
CCAAGGACCAGGCGGAAACAAGCGTGCTATTCGAGCTGATCTCGGCACGATACGAGCACCGGTCGATCCTGATCACCGCCAACCAGCCGTTCGGAGAGTG
GAACCGGGTCTTTCCCGACCCTGCCATGACACTCGCAGCAGTCGACCGGCTCGTGCACCATGCCACGATCTTCGAGATGAACGTCGAAAGCTATCGCCGC
AGAACTGCGCTTGAGGAAAAACGCCAGCGCGGCCGACCGGCCTCGTTTGCGACAATCAGGACATCAACGCTGTCTGTCGCGGAGCGGCAATCAGAAAACG
ACGAAGAACTTGTCAGCGGCAATCAGCATGATAATTTGATCCCGACCGCGACCTAAGAATCTCATCCAGATTGTCGCAAGCGTCTCA
CGTCTCATGATCGCGGTCGGTCCGGTACATTTGCGGTTTTCTGGATTGGAGAACCAGTTTGTGCCGGGTCGCCATTTAACCGATCATCAGATGAGACTCT
TCATGAAGTACCGACAAACGCATTCCGTAGAGGTCGCCGCGTCAAAAGCGTCGATCAGCCGAGCCACGGCATACCGCCTCGCCAAGGAGGTACAACTGCC
TTCTCAGAGCAAAGCGCCGCGCGGACGCCGCCGCCCTGATCCCTTAGAGCTGATATTCGAGACCGAAGTCGTCCCGCTCCTGAAGGCCGCACCCGGTATC
CGTGCCGTCGCTGTCTACAACGAGATGCTGCGCCGACATCCAGAACTCTCTGAAGGTATCCGCCGCACGCTTGAACGACGCATTCGGTCGTGGCGTGCTG
TCCATGGCGAAGCGCAGGGGGTCATCTTCCGCCAAACGCACGAGCCAGGCCGGTTGGGCCTTTCGGATTTTACCGACGCCAGCGGTCTTGGTGTGACCAT
CGCCGGCCAGCCGCTTGATCACCTGTTCTATCACTTCCGGCTTGTCTGGTCGGGCTTCGAACATGCCCATGTCATTCTCGGCGGCGAAAGCTTTGTCGCG
CTGGCTGAAGGGCTTCAAAATGCCCTGTGGTCCGTGGGAGGTACGCCGCTTTATCATCGAAGCGACAGCCTGTCGGCGGCATTCCGCAACCTCGACGCCG
ATGCCAAGGTCGATCTCACCCACCGATACGATCAGCTTTGCTCCCATTATCGAATGACGCCGACGCGCAACAACAAAGGCGTCGCGCATGAGAACGGCTC
TATCGAAAGCTCCCATGGCCATCTCAAGAACTCTGTTCATGACGCCCTGCTGATGCGGGGGGCCAAGGAATTCGACGACCTCAGTTCTTACCGCGCCTTT
GTCGATGACATCGTCAGCCGTCGCAACGCTGCCCATGGCAAGCGCATTGATGCTGAGCGATCCCATCTGCAGGCGCTGCCCGAGCGCCGGACCACGGACT
TCGAAGAGATTGTCGTTACGGTGTCCCGGACGGGCGGCTTCACCTTGCGCAAGGTCTTCTACACCGTGCCATCCCGCCTGATCGGCCACAGGTTAAGAGT
TCGCCTGTTCGACGATCGGCTGGATGTCTTTGTCGGCGGTACGCATCTGATGACGTTGCGCCGAGGACGCGGCCATCCCGACGGCCGACACGACCAGGTC
GTCAACTACCACCACGTCATCCATTCCCTGCGCAAAAAGCCGATGGCGCTCCGCGGCCTCGTTTATCGCGACAAGCTCTTCCCGCGTCAGGAATATCGCA
AGGCCTTCGAAGCCCTCATCGAGCATCTTCCCGACAAGCAGGCTTGCAAGATCACCGTCGAACTCCTGGCGCTCGCGCATGACCGTGGTTGCGAACGCGA
ACTTGCCGAAGAATTGGCCAGGATACTCGATGCTGGTGACTTACCCAATCTGGCTACCATGCGAGCGCTCTTCGGTCCGGATCCAGCCAAGCTGCCGACC
GTTCATGTGCAACTCGCATCGCTCAACGGTTATGAGGCCCTGATCGGGACGGGAGAAGCGGCATGAAGAACGCCCACGTTATCGATGAAGCACGCCTCGG
CATCATGCTCAACGAGCTCCGGCTGCCGACGATCAAAATGCTGTGGCCACGATTTGCCGAAGAGGCGGACCGGGAAGGATGGCCGGCAGCTCGCTTCCTG
TCGGCTATTGCCGAGCACGAGCTGGCAGAGCGTGCCAATCGCAGGATTGAACGGCATCTCGCCGAAGCGCACCTGCCGCCCGGAAAGACCTTAGACAGCT
TCGCCTTTGACGCTGTACCCATGATCTCGAAGGCGCAGGTCATGGCAATCACCGCCGGCGACAGCTGGCTTGCCAAGGGAGCTAACATCCTCATGTTCGG
TCCGCCCGGCGGAGGAAAGAGCCATCTTGCTGCTGCCATCGGCCTTGCGCTGATCGAGAACGGATGGCGGGTCCTGTTCACCCGGACCACCGATCTTGTG
CAGAAGCTTCAGGTCGCCCGAAGGGAACTGCAGCTTGAGTCTGCCATCGACAAACTCAACAGGTACGACTTGCTCATCCTCGATGACCTCGCCTACGTCA
CCAAGGACCAGGCGGAAACAAGCGTGCTATTCGAGCTGATCTCGGCACGATACGAGCACCGGTCGATCCTGATCACCGCCAACCAGCCGTTCGGAGAGTG
GAACCGGGTCTTTCCCGACCCTGCCATGACACTCGCAGCAGTCGACCGGCTCGTGCACCATGCCACGATCTTCGAGATGAACGTCGAAAGCTATCGCCGC
AGAACTGCGCTTGAGGAAAAACGCCAGCGCGGCCGACCGGCCTCGTTTGCGACAATCAGGACATCAACGCTGTCTGTCGCGGAGCGGCAATCAGAAAACG
ACGAAGAACTTGTCAGCGGCAATCAGCATGATAATTTGATCCCGACCGCGACCTAAGAATCTCATCCAGATTGTCGCAAGCGTCTCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1476 bp | 491 aa | 191 | 1666 | + | No |
Chemistry : DDE
ORF sequence :
MRLFMKYRQTHSVEVAASKASISRATAYRLAKEVQLPSQSKAPRGRRRPDPLELIFETEVVPLLKAAPGIRAVAVYNEMLRRHPELSEGIRRTLERRIRS
WRAVHGEAQGVIFRQTHEPGRLGLSDFTDASGLGVTIAGQPLDHLFYHFRLVWSGFEHAHVILGGESFVALAEGLQNALWSVGGTPLYHRSDSLSAAFRN
LDADAKVDLTHRYDQLCSHYRMTPTRNNKGVAHENGSIESSHGHLKNSVHDALLMRGAKEFDDLSSYRAFVDDIVSRRNAAHGKRIDAERSHLQALPERR
TTDFEEIVVTVSRTGGFTLRKVFYTVPSRLIGHRLRVRLFDDRLDVFVGGTHLMTLRRGRGHPDGRHDQVVNYHHVIHSLRKKPMALRGLVYRDKLFPRQ
EYRKAFEALIEHLPDKQACKITVELLALAHDRGCERELAEELARILDAGDLPNLATMRALFGPDPAKLPTVHVQLASLNGYEALIGTGEAA
WRAVHGEAQGVIFRQTHEPGRLGLSDFTDASGLGVTIAGQPLDHLFYHFRLVWSGFEHAHVILGGESFVALAEGLQNALWSVGGTPLYHRSDSLSAAFRN
LDADAKVDLTHRYDQLCSHYRMTPTRNNKGVAHENGSIESSHGHLKNSVHDALLMRGAKEFDDLSSYRAFVDDIVSRRNAAHGKRIDAERSHLQALPERR
TTDFEEIVVTVSRTGGFTLRKVFYTVPSRLIGHRLRVRLFDDRLDVFVGGTHLMTLRRGRGHPDGRHDQVVNYHHVIHSLRKKPMALRGLVYRDKLFPRQ
EYRKAFEALIEHLPDKQACKITVELLALAHDRGCERELAEELARILDAGDLPNLATMRALFGPDPAKLPTVHVQLASLNGYEALIGTGEAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
894 bp | 297 aa | 1663 | 2556 | + | No |
AG : IS21 helper
ORF sequence :
MKNAHVIDEARLGIMLNELRLPTIKMLWPRFAEEADREGWPAARFLSAIAEHELAERANRRIERHLAEAHLPPGKTLDSFAFDAVPMISKAQVMAITAGD
SWLAKGANILMFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIDKLNRYDLLILDDLAYVTKDQAETSVLFELISARYEHR
SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTALEEKRQRGRPASFATIRTSTLSVAERQSENDEELVSGNQHDNLIPTAT
SWLAKGANILMFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIDKLNRYDLLILDDLAYVTKDQAETSVLFELISARYEHR
SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRTALEEKRQRGRPASFATIRTSTLSVAERQSENDEELVSGNQHDNLIPTAT
Blast result :
Comments
ISRel5 ORFA (the transposase) is 72% aa similar to ISRm9 ORFA, and ISRel5 ORFB (helper of transposition) is 81% aa similar to ISAZo16 ORFB.
References