ISSpu22
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Shewanella putrefaciens | Shewanella putrefaciens 200 Shewanella putrafaciens W3-18-1 |
DNA section
IS Length : 1373 bp
Ends
IR Length : 15/17
IRL : taatggaATGGACCCATCCACTTTAAATCGGCCTCGCAATGGGCCACGAT
IRR : ----ataATGGACCCATCCGGTTTGCAAGACATTCGATATCAATTTTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAACATGGA | TGTTTTAGTA | 0 | |
CCCTCATGGA | TGAGTTTATG | 0 | |
TAAACAGGGA | TGTTGTTCAA | 0 | |
TTACAAGGGA | AGTTTTATAG | 0 |
DNA sequence
taatggaATGGACCCATCCACTTTAAATCGGCCTCGCAATGGGCCACGATGTAGTCGCTAAAACTCATCAGAAAGAGGACGGGTCCACCTATGAAGATTA
CTACAATCGGTTTAGATATCGCAAAGTCTGTTTTTCATCTTGTTGGTGTTGATAAAGCTGGCAAGTTAATCAAAAAGAAAATGCTTAGACGCAAAGACTT
GCTGCCCTTTGTCGCGAAAATTGAGCCTTGCCTTATCGTTATGGAGGCGTGTGGCGGCGCGAGTTATTGGGCCAGAGAATTTGAGCAATTTGGGCACATA
GTTAAGTTAATTGCCCCGCAGTATGTGGTTCCTTTTAGGCAAGGTAATAAAAATGACTACAACGATGCGCTAGCCATTGCGGAGGCTGCGCAGCGACCCA
ACATGCGGTTTGTAAAACCCAAAAGCGTCGAGCAGCAAGATGTGCAACTGCTCCACCGTATGCGGGAACGATTAACTAAACAATCAACAGCTTTAATCAA
TCAAGTCAGAGGGATGCTAGCGGAATACGGCATTGTGATGACCAAAAGTAAATCGGCTTTTAAAGCCCAGCTACCTGATATTTTGATCGATGAAGCCAAT
ACACTGACCACCAAGGGTAGAGCCATCTTTTATCAGTTATATGATGAGGTTATCGACATTGAAAAACGGCTTAAGAGTTGTGACACTCAAGTACTAAACG
AAACTCAAAACAATGTGATTTGTCAGCGATTACAGACTATCCCTGGTGTTGGGCCTGTCACCGCTACGGCGATTTATGCTGCAGTGGGTGACGGTAAAGA
CTTTAGCAATGGCCGACATTTTTCAGCTTGGTGTGGCTTAGTACCTAAGCAGCACAGCAGTGGCGGGAAAGATAACCTCCTCGGGATAAGTAAGCGGGGA
AACGCCTATTTACGTACGCTGTTCATCCACGGCGCCAGAGCGGTGTTGCGGCACAGTGGGAGTAAGTCGGATAAGTTGAGTTGTTGGGCTATCCAGCTAG
CGGAACGCCGAGGTTTCAATCGTGCGTGTGTGGCCGTCGCGAATAAGCTCGCCAGAATGTCATGGGTTATCGCGGCACGTGAAGAAGAGTTTCGGCTCGC
TATGTAACAACATCAAATGTACTTATTATGTTAACGATTAACCAACCAGCAAGTTGCTAAGACACTTGATTTGATGATGAGACAGTCAGACTGATCTACT
AAAAACCTTACGAAAACACAGGCTCTGATGAAGCCGCAGGGATGATAAGGACAGTAGAAGCAAATATCCATCAGGGCCAGAGGAATCCCTCAATAACAGG
CCGAATATATGGGTGCAATGAACTCTTCTCAAAATTGATATCGAATGTCTTGCAAACCGGATGGGTCCATata
CTACAATCGGTTTAGATATCGCAAAGTCTGTTTTTCATCTTGTTGGTGTTGATAAAGCTGGCAAGTTAATCAAAAAGAAAATGCTTAGACGCAAAGACTT
GCTGCCCTTTGTCGCGAAAATTGAGCCTTGCCTTATCGTTATGGAGGCGTGTGGCGGCGCGAGTTATTGGGCCAGAGAATTTGAGCAATTTGGGCACATA
GTTAAGTTAATTGCCCCGCAGTATGTGGTTCCTTTTAGGCAAGGTAATAAAAATGACTACAACGATGCGCTAGCCATTGCGGAGGCTGCGCAGCGACCCA
ACATGCGGTTTGTAAAACCCAAAAGCGTCGAGCAGCAAGATGTGCAACTGCTCCACCGTATGCGGGAACGATTAACTAAACAATCAACAGCTTTAATCAA
TCAAGTCAGAGGGATGCTAGCGGAATACGGCATTGTGATGACCAAAAGTAAATCGGCTTTTAAAGCCCAGCTACCTGATATTTTGATCGATGAAGCCAAT
ACACTGACCACCAAGGGTAGAGCCATCTTTTATCAGTTATATGATGAGGTTATCGACATTGAAAAACGGCTTAAGAGTTGTGACACTCAAGTACTAAACG
AAACTCAAAACAATGTGATTTGTCAGCGATTACAGACTATCCCTGGTGTTGGGCCTGTCACCGCTACGGCGATTTATGCTGCAGTGGGTGACGGTAAAGA
CTTTAGCAATGGCCGACATTTTTCAGCTTGGTGTGGCTTAGTACCTAAGCAGCACAGCAGTGGCGGGAAAGATAACCTCCTCGGGATAAGTAAGCGGGGA
AACGCCTATTTACGTACGCTGTTCATCCACGGCGCCAGAGCGGTGTTGCGGCACAGTGGGAGTAAGTCGGATAAGTTGAGTTGTTGGGCTATCCAGCTAG
CGGAACGCCGAGGTTTCAATCGTGCGTGTGTGGCCGTCGCGAATAAGCTCGCCAGAATGTCATGGGTTATCGCGGCACGTGAAGAAGAGTTTCGGCTCGC
TATGTAACAACATCAAATGTACTTATTATGTTAACGATTAACCAACCAGCAAGTTGCTAAGACACTTGATTTGATGATGAGACAGTCAGACTGATCTACT
AAAAACCTTACGAAAACACAGGCTCTGATGAAGCCGCAGGGATGATAAGGACAGTAGAAGCAAATATCCATCAGGGCCAGAGGAATCCCTCAATAACAGG
CCGAATATATGGGTGCAATGAACTCTTCTCAAAATTGATATCGAATGTCTTGCAAACCGGATGGGTCCATata
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1017 bp | 338 aa | 91 | 1107 | + | No |
Chemistry : DEDD
ORF sequence :
MKITTIGLDIAKSVFHLVGVDKAGKLIKKKMLRRKDLLPFVAKIEPCLIVMEACGGASYWAREFEQFGHIVKLIAPQYVVPFRQGNKNDYNDALAIAEAA
QRPNMRFVKPKSVEQQDVQLLHRMRERLTKQSTALINQVRGMLAEYGIVMTKSKSAFKAQLPDILIDEANTLTTKGRAIFYQLYDEVIDIEKRLKSCDTQ
VLNETQNNVICQRLQTIPGVGPVTATAIYAAVGDGKDFSNGRHFSAWCGLVPKQHSSGGKDNLLGISKRGNAYLRTLFIHGARAVLRHSGSKSDKLSCWA
IQLAERRGFNRACVAVANKLARMSWVIAAREEEFRLAM
QRPNMRFVKPKSVEQQDVQLLHRMRERLTKQSTALINQVRGMLAEYGIVMTKSKSAFKAQLPDILIDEANTLTTKGRAIFYQLYDEVIDIEKRLKSCDTQ
VLNETQNNVICQRLQTIPGVGPVTATAIYAAVGDGKDFSNGRHFSAWCGLVPKQHSSGGKDNLLGISKRGNAYLRTLFIHGARAVLRHSGSKSDKLSCWA
IQLAERRGFNRACVAVANKLARMSWVIAAREEEFRLAM
Blast result :
Comments
Genome in progress. Accession number: NZ_AAWY01000001.
The ISSpu22 transposase has 89% identity to that encoded by ISSba19.
Three copies exist in the sequenced genome of S. putrefaciens 200 and one in S. putrefaciens W3-18-1.
The ISSpu22 transposase has 89% identity to that encoded by ISSba19.
Three copies exist in the sequenced genome of S. putrefaciens 200 and one in S. putrefaciens W3-18-1.
References
1] Romine, M (2010) Direct submission.