ISSpu22

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Shewanella putrefaciens
Shewanella putrefaciens 200
Shewanella putrafaciens W3-18-1
DNA section
IS Length : 1373 bp

Ends


IR Length : 15/17

IRL : taatggaATGGACCCATCCACTTTAAATCGGCCTCGCAATGGGCCACGAT
IRR : ----ataATGGACCCATCCGGTTTGCAAGACATTCGATATCAATTTTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
AAAACATGGATGTTTTAGTA0
CCCTCATGGATGAGTTTATG0
TAAACAGGGATGTTGTTCAA0
TTACAAGGGAAGTTTTATAG0

DNA sequence

taatggaATGGACCCATCCACTTTAAATCGGCCTCGCAATGGGCCACGATGTAGTCGCTAAAACTCATCAGAAAGAGGACGGGTCCACCTATGAAGATTA
CTACAATCGGTTTAGATATCGCAAAGTCTGTTTTTCATCTTGTTGGTGTTGATAAAGCTGGCAAGTTAATCAAAAAGAAAATGCTTAGACGCAAAGACTT
GCTGCCCTTTGTCGCGAAAATTGAGCCTTGCCTTATCGTTATGGAGGCGTGTGGCGGCGCGAGTTATTGGGCCAGAGAATTTGAGCAATTTGGGCACATA
GTTAAGTTAATTGCCCCGCAGTATGTGGTTCCTTTTAGGCAAGGTAATAAAAATGACTACAACGATGCGCTAGCCATTGCGGAGGCTGCGCAGCGACCCA
ACATGCGGTTTGTAAAACCCAAAAGCGTCGAGCAGCAAGATGTGCAACTGCTCCACCGTATGCGGGAACGATTAACTAAACAATCAACAGCTTTAATCAA
TCAAGTCAGAGGGATGCTAGCGGAATACGGCATTGTGATGACCAAAAGTAAATCGGCTTTTAAAGCCCAGCTACCTGATATTTTGATCGATGAAGCCAAT
ACACTGACCACCAAGGGTAGAGCCATCTTTTATCAGTTATATGATGAGGTTATCGACATTGAAAAACGGCTTAAGAGTTGTGACACTCAAGTACTAAACG
AAACTCAAAACAATGTGATTTGTCAGCGATTACAGACTATCCCTGGTGTTGGGCCTGTCACCGCTACGGCGATTTATGCTGCAGTGGGTGACGGTAAAGA
CTTTAGCAATGGCCGACATTTTTCAGCTTGGTGTGGCTTAGTACCTAAGCAGCACAGCAGTGGCGGGAAAGATAACCTCCTCGGGATAAGTAAGCGGGGA
AACGCCTATTTACGTACGCTGTTCATCCACGGCGCCAGAGCGGTGTTGCGGCACAGTGGGAGTAAGTCGGATAAGTTGAGTTGTTGGGCTATCCAGCTAG
CGGAACGCCGAGGTTTCAATCGTGCGTGTGTGGCCGTCGCGAATAAGCTCGCCAGAATGTCATGGGTTATCGCGGCACGTGAAGAAGAGTTTCGGCTCGC
TATGTAACAACATCAAATGTACTTATTATGTTAACGATTAACCAACCAGCAAGTTGCTAAGACACTTGATTTGATGATGAGACAGTCAGACTGATCTACT
AAAAACCTTACGAAAACACAGGCTCTGATGAAGCCGCAGGGATGATAAGGACAGTAGAAGCAAATATCCATCAGGGCCAGAGGAATCCCTCAATAACAGG
CCGAATATATGGGTGCAATGAACTCTTCTCAAAATTGATATCGAATGTCTTGCAAACCGGATGGGTCCATata
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa911107+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKITTIGLDIAKSVFHLVGVDKAGKLIKKKMLRRKDLLPFVAKIEPCLIVMEACGGASYWAREFEQFGHIVKLIAPQYVVPFRQGNKNDYNDALAIAEAA
QRPNMRFVKPKSVEQQDVQLLHRMRERLTKQSTALINQVRGMLAEYGIVMTKSKSAFKAQLPDILIDEANTLTTKGRAIFYQLYDEVIDIEKRLKSCDTQ
VLNETQNNVICQRLQTIPGVGPVTATAIYAAVGDGKDFSNGRHFSAWCGLVPKQHSSGGKDNLLGISKRGNAYLRTLFIHGARAVLRHSGSKSDKLSCWA
IQLAERRGFNRACVAVANKLARMSWVIAAREEEFRLAM

 

Blast result :
Comments
Genome in progress. Accession number: NZ_AAWY01000001.
The ISSpu22 transposase has 89% identity to that encoded by ISSba19.
Three copies exist in the sequenced genome of S. putrefaciens 200 and one in S. putrefaciens W3-18-1.
References
1] Romine, M (2010) Direct submission.