ISSgr2

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010572 ND Streptomyces griseus
Streptomyces griseus subsp. griseus NBRC 13350
DNA section
IS Length : 873 bp

Ends


IR Length : 16/20

IRL : GAGCTTCTTCGAGTTGGCCACCGATCGGGTGATGGGCCGTGGGGCGCAAC
IRR : GAGCTTCTTCAGCGTTGCCGCTCCAGTGTGAGGACTGCCTTGGCGATTGA

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGTTCAGTACTGTCTGTC0
CTGGTTCAGTACTGTCTGTC0

DNA sequence

GAGCTTCTTCGAGTTGGCCACCGATCGGGTGATGGGCCGTGGGGCGCAACGGACGAGGCCCCCGGGCTGTTGATCGAGATGTCTGACGTCTCGACAACAC
TGCTCGGGGGCCTCGTTGGTCATCCATCCTGCCGCACTCGACCTGCCGCATGCACTCGTGGAGTGGGTCACCATATTGATCATCACCCGTGAGGGCGACC
GGCGCTGCAAGCTCCGCCCGTCCCAGCGCGCGATGGTGGCACTGGTGTACCTGCGCGAACACACCACGCTCGCGAAGATCGCCGCCGGGTTCGGGATCAG
CGAGTCCACCGCCCACGCCTACACCAGCACGGTCGTCGACCTGCTCGCCGAACGAGCACCGGGCCTGCTCAAGACGCTGCGCGAGCACGAACCCGACTTC
GTCCTGCTCGACGGCACCCTCGCCGAATGCGACCGGGTCGGCGACGGCCGGGCCGACTACTCCCACAAACACCGGCGCCACGGAGTGAACGTGCAGGTCG
TCACCGACCCCGGCGGCCGGCTGCTGTGGCTCTCGCCCGCCCTGCCGGGCCGCACCCACGACCTGACCGCCGCCCGCACCCACCGGATCATCCGGATCTG
CGAGCGCCAGGGCGTCCCGATCCTGGCCGATCTCGCCTACCAGGGCGCCGGCCCGTGGCTGACCACCGGCATCAAACGCAGGCCCCTGCAGGAACTCACC
CCCACCGAAAAGACCCTCAATCAGGCACTGGCCGCAGCACGAGCACCCGTCGAACGCGGCGTCGCAAGGCTGAAGTCCTGGCGGATCTTCCGCAGGTCCC
GATGCAGCCCCGACCGCATGACGTCAATCGCCAAGGCAGTCCTCACACTGGAGCGGCAACGCTGAAGAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
750 bp249 aa116865+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVIHPAALDLPHALVEWVTILIITREGDRRCKLRPSQRAMVALVYLREHTTLAKIAAGFGISESTAHAYTSTVVDLLAERAPGLLKTLREHEPDFVLLDG
TLAECDRVGDGRADYSHKHRRHGVNVQVVTDPGGRLLWLSPALPGRTHDLTAARTHRIIRICERQGVPILADLAYQGAGPWLTTGIKRRPLQELTPTEKT
LNQALAAARAPVERGVARLKSWRIFRRSRCSPDRMTSIAKAVLTLERQR

 

Blast result :
Comments
ISSgr2 is 89% aa similar to ISStsp5.
References
1] ISfinder annotation (2010).
2] Ohnishi,Y., Ishikawa,J., Hara,H., Suzuki,H., Ikenoya,M., Ikeda,H., Yamashita,A., Hattori,M. and Horinouchi,S. (2008) J. Bacteriol. 190 (11), 4050-4060.

3] Funabashi,M., Funa,N. and Horinouchi,S. (2008) J. Biol. Chem. 283 (20), 13983-13991.

4] Hirano,S., Tanaka,K., Ohnishi,Y. and Horinouchi,S. (2008) Microbiology (Reading, Engl.) 154 (PT 3), 905-914.

5] Hattori,M., Ohnishi,Y., Yamashita,A., Ishikawa,J., Ikeda,H. and Horinouchi,S. (2007) Direct submission GenBank.