ISSgr2
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010572 | ND | Streptomyces griseus | Streptomyces griseus subsp. griseus NBRC 13350 |
DNA section
IS Length : 873 bp
Ends
IR Length : 16/20
IRL : GAGCTTCTTCGAGTTGGCCACCGATCGGGTGATGGGCCGTGGGGCGCAAC
IRR : GAGCTTCTTCAGCGTTGCCGCTCCAGTGTGAGGACTGCCTTGGCGATTGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGTTCAGT | ACTGTCTGTC | 0 | |
CTGGTTCAGT | ACTGTCTGTC | 0 |
DNA sequence
GAGCTTCTTCGAGTTGGCCACCGATCGGGTGATGGGCCGTGGGGCGCAACGGACGAGGCCCCCGGGCTGTTGATCGAGATGTCTGACGTCTCGACAACAC
TGCTCGGGGGCCTCGTTGGTCATCCATCCTGCCGCACTCGACCTGCCGCATGCACTCGTGGAGTGGGTCACCATATTGATCATCACCCGTGAGGGCGACC
GGCGCTGCAAGCTCCGCCCGTCCCAGCGCGCGATGGTGGCACTGGTGTACCTGCGCGAACACACCACGCTCGCGAAGATCGCCGCCGGGTTCGGGATCAG
CGAGTCCACCGCCCACGCCTACACCAGCACGGTCGTCGACCTGCTCGCCGAACGAGCACCGGGCCTGCTCAAGACGCTGCGCGAGCACGAACCCGACTTC
GTCCTGCTCGACGGCACCCTCGCCGAATGCGACCGGGTCGGCGACGGCCGGGCCGACTACTCCCACAAACACCGGCGCCACGGAGTGAACGTGCAGGTCG
TCACCGACCCCGGCGGCCGGCTGCTGTGGCTCTCGCCCGCCCTGCCGGGCCGCACCCACGACCTGACCGCCGCCCGCACCCACCGGATCATCCGGATCTG
CGAGCGCCAGGGCGTCCCGATCCTGGCCGATCTCGCCTACCAGGGCGCCGGCCCGTGGCTGACCACCGGCATCAAACGCAGGCCCCTGCAGGAACTCACC
CCCACCGAAAAGACCCTCAATCAGGCACTGGCCGCAGCACGAGCACCCGTCGAACGCGGCGTCGCAAGGCTGAAGTCCTGGCGGATCTTCCGCAGGTCCC
GATGCAGCCCCGACCGCATGACGTCAATCGCCAAGGCAGTCCTCACACTGGAGCGGCAACGCTGAAGAAGCTC
TGCTCGGGGGCCTCGTTGGTCATCCATCCTGCCGCACTCGACCTGCCGCATGCACTCGTGGAGTGGGTCACCATATTGATCATCACCCGTGAGGGCGACC
GGCGCTGCAAGCTCCGCCCGTCCCAGCGCGCGATGGTGGCACTGGTGTACCTGCGCGAACACACCACGCTCGCGAAGATCGCCGCCGGGTTCGGGATCAG
CGAGTCCACCGCCCACGCCTACACCAGCACGGTCGTCGACCTGCTCGCCGAACGAGCACCGGGCCTGCTCAAGACGCTGCGCGAGCACGAACCCGACTTC
GTCCTGCTCGACGGCACCCTCGCCGAATGCGACCGGGTCGGCGACGGCCGGGCCGACTACTCCCACAAACACCGGCGCCACGGAGTGAACGTGCAGGTCG
TCACCGACCCCGGCGGCCGGCTGCTGTGGCTCTCGCCCGCCCTGCCGGGCCGCACCCACGACCTGACCGCCGCCCGCACCCACCGGATCATCCGGATCTG
CGAGCGCCAGGGCGTCCCGATCCTGGCCGATCTCGCCTACCAGGGCGCCGGCCCGTGGCTGACCACCGGCATCAAACGCAGGCCCCTGCAGGAACTCACC
CCCACCGAAAAGACCCTCAATCAGGCACTGGCCGCAGCACGAGCACCCGTCGAACGCGGCGTCGCAAGGCTGAAGTCCTGGCGGATCTTCCGCAGGTCCC
GATGCAGCCCCGACCGCATGACGTCAATCGCCAAGGCAGTCCTCACACTGGAGCGGCAACGCTGAAGAAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
750 bp | 249 aa | 116 | 865 | + | No |
Chemistry : DDE
ORF sequence :
MVIHPAALDLPHALVEWVTILIITREGDRRCKLRPSQRAMVALVYLREHTTLAKIAAGFGISESTAHAYTSTVVDLLAERAPGLLKTLREHEPDFVLLDG
TLAECDRVGDGRADYSHKHRRHGVNVQVVTDPGGRLLWLSPALPGRTHDLTAARTHRIIRICERQGVPILADLAYQGAGPWLTTGIKRRPLQELTPTEKT
LNQALAAARAPVERGVARLKSWRIFRRSRCSPDRMTSIAKAVLTLERQR
TLAECDRVGDGRADYSHKHRRHGVNVQVVTDPGGRLLWLSPALPGRTHDLTAARTHRIIRICERQGVPILADLAYQGAGPWLTTGIKRRPLQELTPTEKT
LNQALAAARAPVERGVARLKSWRIFRRSRCSPDRMTSIAKAVLTLERQR
Blast result :
Comments
ISSgr2 is 89% aa similar to ISStsp5.
References
1] ISfinder annotation (2010).
2] Ohnishi,Y., Ishikawa,J., Hara,H., Suzuki,H., Ikenoya,M., Ikeda,H., Yamashita,A., Hattori,M. and Horinouchi,S. (2008) J. Bacteriol. 190 (11), 4050-4060.
3] Funabashi,M., Funa,N. and Horinouchi,S. (2008) J. Biol. Chem. 283 (20), 13983-13991.
4] Hirano,S., Tanaka,K., Ohnishi,Y. and Horinouchi,S. (2008) Microbiology (Reading, Engl.) 154 (PT 3), 905-914.
5] Hattori,M., Ohnishi,Y., Yamashita,A., Ishikawa,J., Ikeda,H. and Horinouchi,S. (2007) Direct submission GenBank.
2] Ohnishi,Y., Ishikawa,J., Hara,H., Suzuki,H., Ikenoya,M., Ikeda,H., Yamashita,A., Hattori,M. and Horinouchi,S. (2008) J. Bacteriol. 190 (11), 4050-4060.
3] Funabashi,M., Funa,N. and Horinouchi,S. (2008) J. Biol. Chem. 283 (20), 13983-13991.
4] Hirano,S., Tanaka,K., Ohnishi,Y. and Horinouchi,S. (2008) Microbiology (Reading, Engl.) 154 (PT 3), 905-914.
5] Hattori,M., Ohnishi,Y., Yamashita,A., Ishikawa,J., Ikeda,H. and Horinouchi,S. (2007) Direct submission GenBank.