ISStu1
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY707081 | ND | Streptomyces turgidiscabies | Streptomyces turgidiscabies Car8 |
DNA section
IS Length : 889 bp
Ends
IR Length : 15/17
IRL : GAGCCTTTTTCAACCTCTCGCGTCGGCTGGGCAGTTGGCCTGACAAACAG
IRR : GAGCCTTTTCCATCCTCAGTCTGAGCTGGCCAGATGGAGGGTGAGGACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCAAGACCGT | ACTGTGTGGC | 0 |
DNA sequence
GAGCCTTTTTCAACCTCTCGCGTCGGCTGGGCAGTTGGCCTGACAAACAGGTGAAGCCCCTGGTAGATGGGTTTTCGACCAAGAGAACCGTCTCCACCAG
AGGCTTCGCATGCTTGTCTACCCGTCCGGCGTCAACGTGTCCAGCTCTACCCTCCGCTTCCTCGCCACCCGCCTGAGAGAACGTCGGCGCTCTCTCGGCA
CGCGGTGGCGGCGTCTGAATGCGGGCCGACAGGCCCTGCTCACCCTCGCCCACCTCCGCAACGGNCAGCCCTACGCGCAGCTCGCAGCCGGTTTCGGGAT
CGGCACCACCACCGCCTACCGGTACATCGCGGAGGCTGTCGAGCTCCTGGCGGCCCTCGCCCCCACGCTCGCCGAAGCAGTACGGGCCGCGTCGACGAAG
GCGTACCTGATCCTCGACGGGACGCTTCTGCCGATCGACCGGATCGCTGCCGACCGCCCCTTCTATTCAGGAAAACACAAGAAGCACGGCATGAACGTGC
AGGTCATAGCCGATCCGAAGGGCCGTCTCCTGTGGGCTTCACCGGCCCTGGCCGGTGCCGTCCATGACGTGCGGGCCGCCCGCGAGCACGGCATCATCGA
CGCTCTCGCCGAGGCCGGCATCAACTGCTGGGCAGACAAGGGATACCAGGGCGCAGGCGGCACGGTCCGTGTCCCTTACCGAGGCCGATGGGACAGCCTC
TCCGCCGGCCAGCAGGCCGTCAACCGGTCCCATGCGAAGGTCCGGGCACTGGTCNAACAAGCCATCGCCACCCTCAAATCCTGGCGGCTCCTGCGTAAGC
TCCGCTGCTCGACGACCCGGATCACGAGCCTCGTCCAANCCGTCCTCACCCTCCATCTGGCCAGCTCAGACTGAGGATGGAAAAGGCTC
AGGCTTCGCATGCTTGTCTACCCGTCCGGCGTCAACGTGTCCAGCTCTACCCTCCGCTTCCTCGCCACCCGCCTGAGAGAACGTCGGCGCTCTCTCGGCA
CGCGGTGGCGGCGTCTGAATGCGGGCCGACAGGCCCTGCTCACCCTCGCCCACCTCCGCAACGGNCAGCCCTACGCGCAGCTCGCAGCCGGTTTCGGGAT
CGGCACCACCACCGCCTACCGGTACATCGCGGAGGCTGTCGAGCTCCTGGCGGCCCTCGCCCCCACGCTCGCCGAAGCAGTACGGGCCGCGTCGACGAAG
GCGTACCTGATCCTCGACGGGACGCTTCTGCCGATCGACCGGATCGCTGCCGACCGCCCCTTCTATTCAGGAAAACACAAGAAGCACGGCATGAACGTGC
AGGTCATAGCCGATCCGAAGGGCCGTCTCCTGTGGGCTTCACCGGCCCTGGCCGGTGCCGTCCATGACGTGCGGGCCGCCCGCGAGCACGGCATCATCGA
CGCTCTCGCCGAGGCCGGCATCAACTGCTGGGCAGACAAGGGATACCAGGGCGCAGGCGGCACGGTCCGTGTCCCTTACCGAGGCCGATGGGACAGCCTC
TCCGCCGGCCAGCAGGCCGTCAACCGGTCCCATGCGAAGGTCCGGGCACTGGTCNAACAAGCCATCGCCACCCTCAAATCCTGGCGGCTCCTGCGTAAGC
TCCGCTGCTCGACGACCCGGATCACGAGCCTCGTCCAANCCGTCCTCACCCTCCATCTGGCCAGCTCAGACTGAGGATGGAAAAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
765 bp | 254 aa | 110 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MLVYPSGVNVSSSTLRFLATRLRERRRSLGTRWRRLNAGRQALLTLAHLRNGQPYAQLAAGFGIGTTTAYRYIAEAVELLAALAPTLAEAVRAASTKAYL
ILDGTLLPIDRIAADRPFYSGKHKKHGMNVQVIADPKGRLLWASPALAGAVHDVRAAREHGIIDALAEAGINCWADKGYQGAGGTVRVPYRGRWDSLSAG
QQAVNRSHAKVRALVXQAIATLKSWRLLRKLRCSTTRITSLVQXVLTLHLASSD
ILDGTLLPIDRIAADRPFYSGKHKKHGMNVQVIADPKGRLLWASPALAGAVHDVRAAREHGIIDALAEAGINCWADKGYQGAGGTVRVPYRGRWDSLSAG
QQAVNRSHAKVRALVXQAIATLKSWRLLRKLRCSTTRITSLVQXVLTLHLASSD
Blast result :
Comments
ISStu1 is 91% aa similar to ISStsp4.
References
1] ISfinder annotation (2010).
2] Kers,J.A., Cameron,K.D., Joshi,M.V., Bukhalid,R.A., Morello,J.E., Wach,M.J., Gibson,D.M. and Loria,R. (2005) Mol. Microbiol. 55 (4), 1025-1033.
3] Kers,J.A., Cameron,K.D., Joshi,M.V., Morello,J.E. and Loria,R. (2004) Direct submission GenBank.
2] Kers,J.A., Cameron,K.D., Joshi,M.V., Bukhalid,R.A., Morello,J.E., Wach,M.J., Gibson,D.M. and Loria,R. (2005) Mol. Microbiol. 55 (4), 1025-1033.
3] Kers,J.A., Cameron,K.D., Joshi,M.V., Morello,J.E. and Loria,R. (2004) Direct submission GenBank.