ISStu1

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY707081 ND Streptomyces turgidiscabies
Streptomyces turgidiscabies Car8
DNA section
IS Length : 889 bp

Ends


IR Length : 15/17

IRL : GAGCCTTTTTCAACCTCTCGCGTCGGCTGGGCAGTTGGCCTGACAAACAG
IRR : GAGCCTTTTCCATCCTCAGTCTGAGCTGGCCAGATGGAGGGTGAGGACGG

Insertion site


Left flankDirect repeatRight flankDR Length
GCAAGACCGTACTGTGTGGC0

DNA sequence

GAGCCTTTTTCAACCTCTCGCGTCGGCTGGGCAGTTGGCCTGACAAACAGGTGAAGCCCCTGGTAGATGGGTTTTCGACCAAGAGAACCGTCTCCACCAG
AGGCTTCGCATGCTTGTCTACCCGTCCGGCGTCAACGTGTCCAGCTCTACCCTCCGCTTCCTCGCCACCCGCCTGAGAGAACGTCGGCGCTCTCTCGGCA
CGCGGTGGCGGCGTCTGAATGCGGGCCGACAGGCCCTGCTCACCCTCGCCCACCTCCGCAACGGNCAGCCCTACGCGCAGCTCGCAGCCGGTTTCGGGAT
CGGCACCACCACCGCCTACCGGTACATCGCGGAGGCTGTCGAGCTCCTGGCGGCCCTCGCCCCCACGCTCGCCGAAGCAGTACGGGCCGCGTCGACGAAG
GCGTACCTGATCCTCGACGGGACGCTTCTGCCGATCGACCGGATCGCTGCCGACCGCCCCTTCTATTCAGGAAAACACAAGAAGCACGGCATGAACGTGC
AGGTCATAGCCGATCCGAAGGGCCGTCTCCTGTGGGCTTCACCGGCCCTGGCCGGTGCCGTCCATGACGTGCGGGCCGCCCGCGAGCACGGCATCATCGA
CGCTCTCGCCGAGGCCGGCATCAACTGCTGGGCAGACAAGGGATACCAGGGCGCAGGCGGCACGGTCCGTGTCCCTTACCGAGGCCGATGGGACAGCCTC
TCCGCCGGCCAGCAGGCCGTCAACCGGTCCCATGCGAAGGTCCGGGCACTGGTCNAACAAGCCATCGCCACCCTCAAATCCTGGCGGCTCCTGCGTAAGC
TCCGCTGCTCGACGACCCGGATCACGAGCCTCGTCCAANCCGTCCTCACCCTCCATCTGGCCAGCTCAGACTGAGGATGGAAAAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
765 bp254 aa110874+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVYPSGVNVSSSTLRFLATRLRERRRSLGTRWRRLNAGRQALLTLAHLRNGQPYAQLAAGFGIGTTTAYRYIAEAVELLAALAPTLAEAVRAASTKAYL
ILDGTLLPIDRIAADRPFYSGKHKKHGMNVQVIADPKGRLLWASPALAGAVHDVRAAREHGIIDALAEAGINCWADKGYQGAGGTVRVPYRGRWDSLSAG
QQAVNRSHAKVRALVXQAIATLKSWRLLRKLRCSTTRITSLVQXVLTLHLASSD

 

Blast result :
Comments
ISStu1 is 91% aa similar to ISStsp4.
References
1] ISfinder annotation (2010).
2] Kers,J.A., Cameron,K.D., Joshi,M.V., Bukhalid,R.A., Morello,J.E., Wach,M.J., Gibson,D.M. and Loria,R. (2005) Mol. Microbiol. 55 (4), 1025-1033.
3] Kers,J.A., Cameron,K.D., Joshi,M.V., Morello,J.E. and Loria,R. (2004) Direct submission GenBank.