ISSav6
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_003155 | ND | Streptomyces avermitilis | Streptomyces avermitilis MA-4680 |
DNA section
IS Length : 1244 bp
Ends
IR Length : 17/22
IRL : GAGGCTTTTCCAACCTGGTTGCGTGGCACGTCGGTTGGCTGAGGGCGGCG
IRR : GAGCTTCTTCCAACCTGTTCGCCGCGAGCGTGGTGCTCGGCTGGTCATGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGACGGCAAT | ACTGACTGAC | 0 |
DNA sequence
GAGGCTTTTCCAACCTGGTTGCGTGGCACGTCGGTTGGCTGAGGGCGGCGTTGAGGAAAAGGTGAAGCTCCTGGTAGATGGGTTGTCGACCAAGATCAAC
CTGCCCGCCCGGAGCTTCACATGCTTGTCTACCCATCGGGGATCGATCTGTCCACCTCGACCCTGCGCTACCTGTCCGACCTGCTGAGAGCCCGGCGGCG
TGAGCGCGGCACGCGCTGGCGCCGCCTGACCACGGACCGACAGGCTCTGCTCGCGCTGGCCCATCTGCGCTGCGGGCACACGTACGCCCAGCTCGCGGCC
GGCTTCGGGATCGGGCTGGCCACCGTCTACCGGTACATCGTCGAGGCGGTTGAGGTCCTGGCCGCCCTTGCCCCCACCCTCCAGCAGGCCATGACTTTCG
CCGCCAACAAGGCATTCGTGATCCTGGACGGCACCCTGCTGCACATCGACCGCATTGCCGCCGACCGCCCCTACTACTCTGGCAAGCACAAGCGCCACGG
TATGAACGTCCAGGTCATCGCCGACGCGTTCGGACGCCTGCTCTGGGCCTCACCTGCCCTGCCAGGTGCCGTCCACGACATCAAGGCCGCACGCATCCAC
GGCATCATCGAAGCGCTCACCCAAGCTGGCATCCGGACGTGGGCCGACAAGGGATATCAGGGAGCTCAGGGGACGATCCGGGTGCCTTACCGGGGCCGCT
GGAGCACGCTCCCAGCCGGGAAGCGGGCGGTGAACTCCTCCCACGCCAAGATCCGAGCCGTCGGAGAGCAGGCCAACGCCACCCTGAAGAGCTGGCGGCT
CCTGCGCAAACTCCGTTGCAGCACCACCCGCATCACCGACATCGTCAAGGCCGTCCTGGCCTTGCACCTCGCCACGGCAGCCTGAGATCGCTGCGGCCGG
AGGCGTGGACAAGGACAGCGCCACCATCAACGACAGCAAGGGAGACCGCTCACCATGACAGACGTCAGAGTCACCTACGACAAGACCGTCAACGCAGCGT
ACGTATACCTCACCGAACCGCAGGCTCGCGTGAAGTCCGCGCGCATGTATCCCTGCGATCCAGTGGACGTCGACGGCATGATCAACCTCGACTTCGACGA
GCAGGGCCGCCTCATCGGCATCGAGGTATTGGCGGCTAGTTCGAAACTGCCCGAGTACCTGCTCCAGTCCGCGGAGCGACTTGACACCGAAGGTGCATGA
CCAGCCGAGCACCACGCTCGCGGCGAACAGGTTGGAAGAAGCTC
CTGCCCGCCCGGAGCTTCACATGCTTGTCTACCCATCGGGGATCGATCTGTCCACCTCGACCCTGCGCTACCTGTCCGACCTGCTGAGAGCCCGGCGGCG
TGAGCGCGGCACGCGCTGGCGCCGCCTGACCACGGACCGACAGGCTCTGCTCGCGCTGGCCCATCTGCGCTGCGGGCACACGTACGCCCAGCTCGCGGCC
GGCTTCGGGATCGGGCTGGCCACCGTCTACCGGTACATCGTCGAGGCGGTTGAGGTCCTGGCCGCCCTTGCCCCCACCCTCCAGCAGGCCATGACTTTCG
CCGCCAACAAGGCATTCGTGATCCTGGACGGCACCCTGCTGCACATCGACCGCATTGCCGCCGACCGCCCCTACTACTCTGGCAAGCACAAGCGCCACGG
TATGAACGTCCAGGTCATCGCCGACGCGTTCGGACGCCTGCTCTGGGCCTCACCTGCCCTGCCAGGTGCCGTCCACGACATCAAGGCCGCACGCATCCAC
GGCATCATCGAAGCGCTCACCCAAGCTGGCATCCGGACGTGGGCCGACAAGGGATATCAGGGAGCTCAGGGGACGATCCGGGTGCCTTACCGGGGCCGCT
GGAGCACGCTCCCAGCCGGGAAGCGGGCGGTGAACTCCTCCCACGCCAAGATCCGAGCCGTCGGAGAGCAGGCCAACGCCACCCTGAAGAGCTGGCGGCT
CCTGCGCAAACTCCGTTGCAGCACCACCCGCATCACCGACATCGTCAAGGCCGTCCTGGCCTTGCACCTCGCCACGGCAGCCTGAGATCGCTGCGGCCGG
AGGCGTGGACAAGGACAGCGCCACCATCAACGACAGCAAGGGAGACCGCTCACCATGACAGACGTCAGAGTCACCTACGACAAGACCGTCAACGCAGCGT
ACGTATACCTCACCGAACCGCAGGCTCGCGTGAAGTCCGCGCGCATGTATCCCTGCGATCCAGTGGACGTCGACGGCATGATCAACCTCGACTTCGACGA
GCAGGGCCGCCTCATCGGCATCGAGGTATTGGCGGCTAGTTCGAAACTGCCCGAGTACCTGCTCCAGTCCGCGGAGCGACTTGACACCGAAGGTGCATGA
CCAGCCGAGCACCACGCTCGCGGCGAACAGGTTGGAAGAAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
765 bp | 254 aa | 121 | 885 | + | No |
Chemistry : DDE
ORF sequence :
MLVYPSGIDLSTSTLRYLSDLLRARRRERGTRWRRLTTDRQALLALAHLRCGHTYAQLAAGFGIGLATVYRYIVEAVEVLAALAPTLQQAMTFAANKAFV
ILDGTLLHIDRIAADRPYYSGKHKRHGMNVQVIADAFGRLLWASPALPGAVHDIKAARIHGIIEALTQAGIRTWADKGYQGAQGTIRVPYRGRWSTLPAG
KRAVNSSHAKIRAVGEQANATLKSWRLLRKLRCSTTRITDIVKAVLALHLATAA
ILDGTLLHIDRIAADRPYYSGKHKRHGMNVQVIADAFGRLLWASPALPGAVHDIKAARIHGIIEALTQAGIRTWADKGYQGAQGTIRVPYRGRWSTLPAG
KRAVNSSHAKIRAVGEQANATLKSWRLLRKLRCSTTRITDIVKAVLALHLATAA
Blast result :
Comments
ISSav6 is 88% aa similar to ISStsp4.
References
1] ISfinder annotation (2010).
2] Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H., Shiba,T., Sakaki,Y., Hattori,M. and Omura,S. (2003)Nat. Biotechnol. 21 (5), 526-531.
3] Omura,S., Ikeda,H., Ishikawa,J., Hanamoto,A., Takahashi,C., Shinose,M., Takahashi,Y., Horikawa,H., Nakazawa,H., Osonoe,T., Kikuchi,H., Shiba,T., Sakaki,Y. and Hattori,M. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (21), 12215-12220
2] Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H., Shiba,T., Sakaki,Y., Hattori,M. and Omura,S. (2003)Nat. Biotechnol. 21 (5), 526-531.
3] Omura,S., Ikeda,H., Ishikawa,J., Hanamoto,A., Takahashi,C., Shinose,M., Takahashi,Y., Horikawa,H., Nakazawa,H., Osonoe,T., Kikuchi,H., Shiba,T., Sakaki,Y. and Hattori,M. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (21), 12215-12220