ISSav6

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003155 ND Streptomyces avermitilis
Streptomyces avermitilis MA-4680
DNA section
IS Length : 1244 bp

Ends


IR Length : 17/22

IRL : GAGGCTTTTCCAACCTGGTTGCGTGGCACGTCGGTTGGCTGAGGGCGGCG
IRR : GAGCTTCTTCCAACCTGTTCGCCGCGAGCGTGGTGCTCGGCTGGTCATGC

Insertion site


Left flankDirect repeatRight flankDR Length
TGACGGCAATACTGACTGAC0

DNA sequence

GAGGCTTTTCCAACCTGGTTGCGTGGCACGTCGGTTGGCTGAGGGCGGCGTTGAGGAAAAGGTGAAGCTCCTGGTAGATGGGTTGTCGACCAAGATCAAC
CTGCCCGCCCGGAGCTTCACATGCTTGTCTACCCATCGGGGATCGATCTGTCCACCTCGACCCTGCGCTACCTGTCCGACCTGCTGAGAGCCCGGCGGCG
TGAGCGCGGCACGCGCTGGCGCCGCCTGACCACGGACCGACAGGCTCTGCTCGCGCTGGCCCATCTGCGCTGCGGGCACACGTACGCCCAGCTCGCGGCC
GGCTTCGGGATCGGGCTGGCCACCGTCTACCGGTACATCGTCGAGGCGGTTGAGGTCCTGGCCGCCCTTGCCCCCACCCTCCAGCAGGCCATGACTTTCG
CCGCCAACAAGGCATTCGTGATCCTGGACGGCACCCTGCTGCACATCGACCGCATTGCCGCCGACCGCCCCTACTACTCTGGCAAGCACAAGCGCCACGG
TATGAACGTCCAGGTCATCGCCGACGCGTTCGGACGCCTGCTCTGGGCCTCACCTGCCCTGCCAGGTGCCGTCCACGACATCAAGGCCGCACGCATCCAC
GGCATCATCGAAGCGCTCACCCAAGCTGGCATCCGGACGTGGGCCGACAAGGGATATCAGGGAGCTCAGGGGACGATCCGGGTGCCTTACCGGGGCCGCT
GGAGCACGCTCCCAGCCGGGAAGCGGGCGGTGAACTCCTCCCACGCCAAGATCCGAGCCGTCGGAGAGCAGGCCAACGCCACCCTGAAGAGCTGGCGGCT
CCTGCGCAAACTCCGTTGCAGCACCACCCGCATCACCGACATCGTCAAGGCCGTCCTGGCCTTGCACCTCGCCACGGCAGCCTGAGATCGCTGCGGCCGG
AGGCGTGGACAAGGACAGCGCCACCATCAACGACAGCAAGGGAGACCGCTCACCATGACAGACGTCAGAGTCACCTACGACAAGACCGTCAACGCAGCGT
ACGTATACCTCACCGAACCGCAGGCTCGCGTGAAGTCCGCGCGCATGTATCCCTGCGATCCAGTGGACGTCGACGGCATGATCAACCTCGACTTCGACGA
GCAGGGCCGCCTCATCGGCATCGAGGTATTGGCGGCTAGTTCGAAACTGCCCGAGTACCTGCTCCAGTCCGCGGAGCGACTTGACACCGAAGGTGCATGA
CCAGCCGAGCACCACGCTCGCGGCGAACAGGTTGGAAGAAGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
765 bp254 aa121885+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVYPSGIDLSTSTLRYLSDLLRARRRERGTRWRRLTTDRQALLALAHLRCGHTYAQLAAGFGIGLATVYRYIVEAVEVLAALAPTLQQAMTFAANKAFV
ILDGTLLHIDRIAADRPYYSGKHKRHGMNVQVIADAFGRLLWASPALPGAVHDIKAARIHGIIEALTQAGIRTWADKGYQGAQGTIRVPYRGRWSTLPAG
KRAVNSSHAKIRAVGEQANATLKSWRLLRKLRCSTTRITDIVKAVLALHLATAA

 

Blast result :
Comments
ISSav6 is 88% aa similar to ISStsp4.
References
1] ISfinder annotation (2010).
2] Ikeda,H., Ishikawa,J., Hanamoto,A., Shinose,M., Kikuchi,H., Shiba,T., Sakaki,Y., Hattori,M. and Omura,S. (2003)Nat. Biotechnol. 21 (5), 526-531.
3] Omura,S., Ikeda,H., Ishikawa,J., Hanamoto,A., Takahashi,C., Shinose,M., Takahashi,Y., Horikawa,H., Nakazawa,H., Osonoe,T., Kikuchi,H., Shiba,T., Sakaki,Y. and Hattori,M. (2001) Proc. Natl. Acad. Sci. U.S.A. 98 (21), 12215-12220