ISClhy1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABYI02000022 ND Clostridium hylemonae
Clostridium hylemonae DSM 15053
DNA section
IS Length : 1698 bp

Ends


IR Length : 16

IRL : CAGACTGTAGACAAAGTCCTGGGCGAAAAGCCCGGGCTTTTCTATTATCA
IRR : CAGACTGTAGACAAAGATGGTGTTGAGGCCTTGCTCCAACACCATCTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
CAAAAGGGACAGGGCAAAAAGAGATGGGGACGGAGGTTTTTTAAAAAACCTCCGTCCCCATCTCTTTTTGCTGTATATTTTT60

DNA sequence

CAGACTGTAGACAAAGTCCTGGGCGAAAAGCCCGGGCTTTTCTATTATCAAGATATCCACATACTGTATGTTATCCGCTTCCTCAATCAAAAAAAATGCA
GCTGGTATCCACCTGTTTATCAGCGAATTTATGCTGGATCCGTGGTATAATTATTGTATCAGGAGGTGCCAGCTTATGATGACAAAAGATGCCGATAAAA
AGAGAGAGCAAATGCAAATGTTCTGTATGGATGACATGGTCCCCAAAGATCACATGCTCCGTTTGATAGATAAAGCGATCGACTGGCGTTTTATCTATGA
ACTTGTAGAAGACAGATACTGCCCGGATAACGGGCGTCCCAGTATGGATCCTGTGATGCTCATCAAGATTCCTTTTATTCAGTATCTTTATGGAATCAAA
AGCATGCGCCAGACCATAAAGGAGATCGAAGTAAATGTGGCATATCGTTGGTTCCTTGGTCTGGACATGTTAGATCCAGTCCCCCATTTTTCCACCTTTG
GGAAGAACTATGCCCGGCGCTTTAAAGATACAGATCTATTTGAACAGATCTTTTCTAAAATCCTGGAAGAATGTATGAAGTTTCATCTGATAGATACTTC
CGTTGTCTTTGTAGATTCCACTCATGTAAAAGCATGTGCAAACAGTAAGAAGATGCGAAAACGTGTTGCGGCGCAGCAGGCTCTTTGGTACGAAGAGGAA
CTAAAAAAAGAGATCCTTCAGGATCGAAAAAAACATGGCAAAAAGCCGCTGAAAGATAAGGATGACAAGACGCCACCTACACAGACCGGAGGCGGAACGG
GAGAAGGGGTTCCGGAAGAGGAGATCCCGGAAGGGGCCAAAACGCAGAAATGCAGTACAAGTGATCCGGAAAGCGGGTGGTTCCGCAAAGGAGAGCATAA
ACATACCTTTGCCTATGCAGTGGAAACAGCATGTGACCGTTATGGATGGATACTTGGATATACGGTACATCCGGGAAATGAACATGACAGCCGGACTTTT
AAAGCCTTGTATGACAGGCTAACCAAATGGATGCGTCCAGAAAGGGTGGTCATGGACGCTGGATATCGGACCCCAGCGATCGCACATAGGCTTTTGGCAG
ATGGGATCGAACCACTTTTCCCATACAAAAGGCCAGCGACGAAAAAGGGATTTTTCAAAAAGTATGACTATGTTTATGACGAATACTATGACTGTTACCT
ATGCCCGGAGGATGAAGTTTTAAGCTACCGTACAACAAACCGGGAAGGGTACCGGGAATATAAAAGCGACCCTCAGATATGCGGGAGCTGCCCCAGTCTT
TCCCAATGTACAGAAAGCAAAACGCATGAAAAGATGGTGACAAGACATATATGGGAAGAAGAACTGGACAGATGTGAAGATATCAGATATACGATTGGAA
ACAGAGAGATCTATGGAAAGAGAAAGGAGACCATAGAACGCGTATTTGGGACGGCAAAAGAACAACACGGTTTTCGTTATACCCAATCTGTGGGGAAAGC
CCAAATGGAACTAAAAACTGGGCTCACTTTTGCATGCATGAACTTGAAAAAGTTAGCAAAGATCCTGGCAAACAGAGAGGAAAAAGGAGCCCCTACGCAA
AGCGTTCTCTTACTTTGGGTCCACAAAATTGAAACGACACTTCGAAACAAAAGATGGTGTTGGAGCAAGGCCTCAACACCATCTTTGTCTACAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1631 bp550 aa681698+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSASSIKKNAAGIHLFISEFMLDPWYNYCIRRCQLMMTKDADKKREQMQMFCMDDMVPKDHMLRLIDKAIDWRFIYELVEDRYCPDNGRPSMDPVMLIK
IPFIQYLYGIKSMRQTIKEIEVNVAYRWFLGLDMLDPVPHFSTFGKNYARRFKDTDLFEQIFSKILEECMKFHLIDTSVVFVDSTHVKACANSKKMRKRV
AAQQALWYEEELKKEILQDRKKHGKKPLKDKDDKTPPTQTGGGTGEGVPEEEIPEGAKTQKCSTSDPESGWFRKGEHKHTFAYAVETACDRYGWILGYTV
HPGNEHDSRTFKALYDRLTKWMRPERVVMDAGYRTPAIAHRLLADGIEPLFPYKRPATKKGFFKKYDYVYDEYYDCYLCPEDEVLSYRTTNREGYREYKS
DPQICGSCPSLSQCTESKTHEKMVTRHIWEEELDRCEDIRYTIGNREIYGKRKETIERVFGTAKEQHGFRYTQSVGKAQMELKTGLTFACMNLKKLAKIL
ANREEKGAPTQSVLLLWVHKIETTLRNKRWCWSKASTPSLSTVWAKRDGD

 

Blast result :
Comments
ISClhy1 is 85% aa similar to ISClsp3. There is no STOP codon in the IS.
References
1] ISfinder annotation (2010)
2] Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K. (2008) Direct submission GenBank.