ISClhy1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABYI02000022 | ND | Clostridium hylemonae | Clostridium hylemonae DSM 15053 |
DNA section
IS Length : 1698 bp
Ends
IR Length : 16
IRL : CAGACTGTAGACAAAGTCCTGGGCGAAAAGCCCGGGCTTTTCTATTATCA
IRR : CAGACTGTAGACAAAGATGGTGTTGAGGCCTTGCTCCAACACCATCTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAAAAGGGACAG | GGCAAAAAGAGATGGGGACGGAGGTTTTTTAAAAAACCTCCGTCCCCATCTCTTTTTGCT | GTATATTTTT | 60 |
DNA sequence
CAGACTGTAGACAAAGTCCTGGGCGAAAAGCCCGGGCTTTTCTATTATCAAGATATCCACATACTGTATGTTATCCGCTTCCTCAATCAAAAAAAATGCA
GCTGGTATCCACCTGTTTATCAGCGAATTTATGCTGGATCCGTGGTATAATTATTGTATCAGGAGGTGCCAGCTTATGATGACAAAAGATGCCGATAAAA
AGAGAGAGCAAATGCAAATGTTCTGTATGGATGACATGGTCCCCAAAGATCACATGCTCCGTTTGATAGATAAAGCGATCGACTGGCGTTTTATCTATGA
ACTTGTAGAAGACAGATACTGCCCGGATAACGGGCGTCCCAGTATGGATCCTGTGATGCTCATCAAGATTCCTTTTATTCAGTATCTTTATGGAATCAAA
AGCATGCGCCAGACCATAAAGGAGATCGAAGTAAATGTGGCATATCGTTGGTTCCTTGGTCTGGACATGTTAGATCCAGTCCCCCATTTTTCCACCTTTG
GGAAGAACTATGCCCGGCGCTTTAAAGATACAGATCTATTTGAACAGATCTTTTCTAAAATCCTGGAAGAATGTATGAAGTTTCATCTGATAGATACTTC
CGTTGTCTTTGTAGATTCCACTCATGTAAAAGCATGTGCAAACAGTAAGAAGATGCGAAAACGTGTTGCGGCGCAGCAGGCTCTTTGGTACGAAGAGGAA
CTAAAAAAAGAGATCCTTCAGGATCGAAAAAAACATGGCAAAAAGCCGCTGAAAGATAAGGATGACAAGACGCCACCTACACAGACCGGAGGCGGAACGG
GAGAAGGGGTTCCGGAAGAGGAGATCCCGGAAGGGGCCAAAACGCAGAAATGCAGTACAAGTGATCCGGAAAGCGGGTGGTTCCGCAAAGGAGAGCATAA
ACATACCTTTGCCTATGCAGTGGAAACAGCATGTGACCGTTATGGATGGATACTTGGATATACGGTACATCCGGGAAATGAACATGACAGCCGGACTTTT
AAAGCCTTGTATGACAGGCTAACCAAATGGATGCGTCCAGAAAGGGTGGTCATGGACGCTGGATATCGGACCCCAGCGATCGCACATAGGCTTTTGGCAG
ATGGGATCGAACCACTTTTCCCATACAAAAGGCCAGCGACGAAAAAGGGATTTTTCAAAAAGTATGACTATGTTTATGACGAATACTATGACTGTTACCT
ATGCCCGGAGGATGAAGTTTTAAGCTACCGTACAACAAACCGGGAAGGGTACCGGGAATATAAAAGCGACCCTCAGATATGCGGGAGCTGCCCCAGTCTT
TCCCAATGTACAGAAAGCAAAACGCATGAAAAGATGGTGACAAGACATATATGGGAAGAAGAACTGGACAGATGTGAAGATATCAGATATACGATTGGAA
ACAGAGAGATCTATGGAAAGAGAAAGGAGACCATAGAACGCGTATTTGGGACGGCAAAAGAACAACACGGTTTTCGTTATACCCAATCTGTGGGGAAAGC
CCAAATGGAACTAAAAACTGGGCTCACTTTTGCATGCATGAACTTGAAAAAGTTAGCAAAGATCCTGGCAAACAGAGAGGAAAAAGGAGCCCCTACGCAA
AGCGTTCTCTTACTTTGGGTCCACAAAATTGAAACGACACTTCGAAACAAAAGATGGTGTTGGAGCAAGGCCTCAACACCATCTTTGTCTACAGTCTG
GCTGGTATCCACCTGTTTATCAGCGAATTTATGCTGGATCCGTGGTATAATTATTGTATCAGGAGGTGCCAGCTTATGATGACAAAAGATGCCGATAAAA
AGAGAGAGCAAATGCAAATGTTCTGTATGGATGACATGGTCCCCAAAGATCACATGCTCCGTTTGATAGATAAAGCGATCGACTGGCGTTTTATCTATGA
ACTTGTAGAAGACAGATACTGCCCGGATAACGGGCGTCCCAGTATGGATCCTGTGATGCTCATCAAGATTCCTTTTATTCAGTATCTTTATGGAATCAAA
AGCATGCGCCAGACCATAAAGGAGATCGAAGTAAATGTGGCATATCGTTGGTTCCTTGGTCTGGACATGTTAGATCCAGTCCCCCATTTTTCCACCTTTG
GGAAGAACTATGCCCGGCGCTTTAAAGATACAGATCTATTTGAACAGATCTTTTCTAAAATCCTGGAAGAATGTATGAAGTTTCATCTGATAGATACTTC
CGTTGTCTTTGTAGATTCCACTCATGTAAAAGCATGTGCAAACAGTAAGAAGATGCGAAAACGTGTTGCGGCGCAGCAGGCTCTTTGGTACGAAGAGGAA
CTAAAAAAAGAGATCCTTCAGGATCGAAAAAAACATGGCAAAAAGCCGCTGAAAGATAAGGATGACAAGACGCCACCTACACAGACCGGAGGCGGAACGG
GAGAAGGGGTTCCGGAAGAGGAGATCCCGGAAGGGGCCAAAACGCAGAAATGCAGTACAAGTGATCCGGAAAGCGGGTGGTTCCGCAAAGGAGAGCATAA
ACATACCTTTGCCTATGCAGTGGAAACAGCATGTGACCGTTATGGATGGATACTTGGATATACGGTACATCCGGGAAATGAACATGACAGCCGGACTTTT
AAAGCCTTGTATGACAGGCTAACCAAATGGATGCGTCCAGAAAGGGTGGTCATGGACGCTGGATATCGGACCCCAGCGATCGCACATAGGCTTTTGGCAG
ATGGGATCGAACCACTTTTCCCATACAAAAGGCCAGCGACGAAAAAGGGATTTTTCAAAAAGTATGACTATGTTTATGACGAATACTATGACTGTTACCT
ATGCCCGGAGGATGAAGTTTTAAGCTACCGTACAACAAACCGGGAAGGGTACCGGGAATATAAAAGCGACCCTCAGATATGCGGGAGCTGCCCCAGTCTT
TCCCAATGTACAGAAAGCAAAACGCATGAAAAGATGGTGACAAGACATATATGGGAAGAAGAACTGGACAGATGTGAAGATATCAGATATACGATTGGAA
ACAGAGAGATCTATGGAAAGAGAAAGGAGACCATAGAACGCGTATTTGGGACGGCAAAAGAACAACACGGTTTTCGTTATACCCAATCTGTGGGGAAAGC
CCAAATGGAACTAAAAACTGGGCTCACTTTTGCATGCATGAACTTGAAAAAGTTAGCAAAGATCCTGGCAAACAGAGAGGAAAAAGGAGCCCCTACGCAA
AGCGTTCTCTTACTTTGGGTCCACAAAATTGAAACGACACTTCGAAACAAAAGATGGTGTTGGAGCAAGGCCTCAACACCATCTTTGTCTACAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1631 bp | 550 aa | 68 | 1698 | + | No |
Chemistry : DDE
ORF sequence :
MLSASSIKKNAAGIHLFISEFMLDPWYNYCIRRCQLMMTKDADKKREQMQMFCMDDMVPKDHMLRLIDKAIDWRFIYELVEDRYCPDNGRPSMDPVMLIK
IPFIQYLYGIKSMRQTIKEIEVNVAYRWFLGLDMLDPVPHFSTFGKNYARRFKDTDLFEQIFSKILEECMKFHLIDTSVVFVDSTHVKACANSKKMRKRV
AAQQALWYEEELKKEILQDRKKHGKKPLKDKDDKTPPTQTGGGTGEGVPEEEIPEGAKTQKCSTSDPESGWFRKGEHKHTFAYAVETACDRYGWILGYTV
HPGNEHDSRTFKALYDRLTKWMRPERVVMDAGYRTPAIAHRLLADGIEPLFPYKRPATKKGFFKKYDYVYDEYYDCYLCPEDEVLSYRTTNREGYREYKS
DPQICGSCPSLSQCTESKTHEKMVTRHIWEEELDRCEDIRYTIGNREIYGKRKETIERVFGTAKEQHGFRYTQSVGKAQMELKTGLTFACMNLKKLAKIL
ANREEKGAPTQSVLLLWVHKIETTLRNKRWCWSKASTPSLSTVWAKRDGD
IPFIQYLYGIKSMRQTIKEIEVNVAYRWFLGLDMLDPVPHFSTFGKNYARRFKDTDLFEQIFSKILEECMKFHLIDTSVVFVDSTHVKACANSKKMRKRV
AAQQALWYEEELKKEILQDRKKHGKKPLKDKDDKTPPTQTGGGTGEGVPEEEIPEGAKTQKCSTSDPESGWFRKGEHKHTFAYAVETACDRYGWILGYTV
HPGNEHDSRTFKALYDRLTKWMRPERVVMDAGYRTPAIAHRLLADGIEPLFPYKRPATKKGFFKKYDYVYDEYYDCYLCPEDEVLSYRTTNREGYREYKS
DPQICGSCPSLSQCTESKTHEKMVTRHIWEEELDRCEDIRYTIGNREIYGKRKETIERVFGTAKEQHGFRYTQSVGKAQMELKTGLTFACMNLKKLAKIL
ANREEKGAPTQSVLLLWVHKIETTLRNKRWCWSKASTPSLSTVWAKRDGD
Blast result :
Comments
ISClhy1 is 85% aa similar to ISClsp3. There is no STOP codon in the IS.
References
1] ISfinder annotation (2010)
2] Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K. (2008) Direct submission GenBank.
2] Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K. (2008) Direct submission GenBank.