ISSar1
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009953 | ND | Salinispora arenicola | Salinispora arenicola CNS-205 |
DNA section
IS Length : 914 bp
Ends
IR Length : 14/17
IRL : GAGCCTTTTCCAAGCTGATCTTGCAGCTCAGGGTGGGTGTGGTAGCCCGG
IRR : GAGCCTTTTCATCCTGCGTAGCGGTTGGCTTCGACGTGGTGCAGGACGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCACCACAGT | ACTGAAGGCG | 0 | |
TCGCTTGTCC | ACT | GCATGTAGGT | 3 |
DNA sequence
GAGCCTTTTCCAAGCTGATCTTGCAGCTCAGGGTGGGTGTGGTAGCCCGGTGATCGATGGGTGCGAGGCTCCAGGTAGGACAGCTGTCGACCAAGACTCG
AAGCCCCGACCGGGAGCCTCGCCATGCTGTCCTACCCCGCCACGATTCCGTTGTCCAGCCGCACCCTGAACCACCTCGCCGAACGCATCCGAGGCCACCG
CAAGCAGCGCCGATCCCGATGGCGGCGTCTCGATCCCGGCCGGCAGGCGCTGCTGGTCCTGGCCCATCTGCGTAACGGCGACACCTACACCCGACTCGCG
GCCGGCTTCGAGATCGGCGTCGCCACCGCCTGGCGGTACGTGCAGGAAGCGATAGCCCTGCTCAGTTCGGCAGCCGACGACCTGGACACCGCCATGGAAC
GCATCCGCCGACTGGCGTACGCGATCCTGGACGGCACCCTGATGCCGACTGACCGGATCGCCGACCAGAAGCCGTACTACTCCGGGAAACACAAGCACCA
CGGCGTGAACGTGCAGGTCATCGCCGACGCCGCTGGCCGGCTCGTCTGGGCTTCACCGGCGCTGCCCGGTTCGGTCCACGACCTGACCGCAGCCCGAACC
CACGGCATCATCGACGCGCTGAGCAGGGCAGACGTGATGACGTTCGCCGACATGGGCTACCAAGGAGCCCGCGGCAGCGTGCGCACCCCATTCAAGCGGC
ACCGCTTCCGCCCAAAGCTGTCACGCCGGCAGAAAGCCGTGAACCGCGCCCACGCGACAATCCGCGCCCGCGGCGAACGCGCGATCGCCACCCTCAAGAC
CTGGAAGATCCTGAACAAGCTGCGCTGCTGCCCACGCCGAGCGACCCCGATCGTGCAGGCCATCCTCGTCCTGCACCACGTCGAAGCCAACCGCTACGCA
GGATGAAAAGGCTC
AAGCCCCGACCGGGAGCCTCGCCATGCTGTCCTACCCCGCCACGATTCCGTTGTCCAGCCGCACCCTGAACCACCTCGCCGAACGCATCCGAGGCCACCG
CAAGCAGCGCCGATCCCGATGGCGGCGTCTCGATCCCGGCCGGCAGGCGCTGCTGGTCCTGGCCCATCTGCGTAACGGCGACACCTACACCCGACTCGCG
GCCGGCTTCGAGATCGGCGTCGCCACCGCCTGGCGGTACGTGCAGGAAGCGATAGCCCTGCTCAGTTCGGCAGCCGACGACCTGGACACCGCCATGGAAC
GCATCCGCCGACTGGCGTACGCGATCCTGGACGGCACCCTGATGCCGACTGACCGGATCGCCGACCAGAAGCCGTACTACTCCGGGAAACACAAGCACCA
CGGCGTGAACGTGCAGGTCATCGCCGACGCCGCTGGCCGGCTCGTCTGGGCTTCACCGGCGCTGCCCGGTTCGGTCCACGACCTGACCGCAGCCCGAACC
CACGGCATCATCGACGCGCTGAGCAGGGCAGACGTGATGACGTTCGCCGACATGGGCTACCAAGGAGCCCGCGGCAGCGTGCGCACCCCATTCAAGCGGC
ACCGCTTCCGCCCAAAGCTGTCACGCCGGCAGAAAGCCGTGAACCGCGCCCACGCGACAATCCGCGCCCGCGGCGAACGCGCGATCGCCACCCTCAAGAC
CTGGAAGATCCTGAACAAGCTGCGCTGCTGCCCACGCCGAGCGACCCCGATCGTGCAGGCCATCCTCGTCCTGCACCACGTCGAAGCCAACCGCTACGCA
GGATGAAAAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
783 bp | 260 aa | 124 | 906 | + | No |
Chemistry : DDE
ORF sequence :
MLSYPATIPLSSRTLNHLAERIRGHRKQRRSRWRRLDPGRQALLVLAHLRNGDTYTRLAAGFEIGVATAWRYVQEAIALLSSAADDLDTAMERIRRLAYA
ILDGTLMPTDRIADQKPYYSGKHKHHGVNVQVIADAAGRLVWASPALPGSVHDLTAARTHGIIDALSRADVMTFADMGYQGARGSVRTPFKRHRFRPKLS
RRQKAVNRAHATIRARGERAIATLKTWKILNKLRCCPRRATPIVQAILVLHHVEANRYAG
ILDGTLMPTDRIADQKPYYSGKHKHHGVNVQVIADAAGRLVWASPALPGSVHDLTAARTHGIIDALSRADVMTFADMGYQGARGSVRTPFKRHRFRPKLS
RRQKAVNRAHATIRARGERAIATLKTWKILNKLRCCPRRATPIVQAILVLHHVEANRYAG
Blast result :
Comments
ISSar1 is 72% aa similar to IS493.
References
1] ISfinder annotation (2010)
2] Penn,K., Jenkins,C., Nett,M., Udwary,D.W., Gontang,E.A., McGlinchey,R.P., Foster,B., Lapidus,A., Podell,S., Allen,E.E., Moore,B.S. and Jensen,P.R. (2009) ISME J 3 (10), 1193-1203
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Jensen,P.R., Moore,B.S., Penn,K., Jenkins,C., Udwary,D., Xiang,L., Gontang,E. and Richardson,P. (2007) Direct suubmission GenBank.
2] Penn,K., Jenkins,C., Nett,M., Udwary,D.W., Gontang,E.A., McGlinchey,R.P., Foster,B., Lapidus,A., Podell,S., Allen,E.E., Moore,B.S. and Jensen,P.R. (2009) ISME J 3 (10), 1193-1203
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Jensen,P.R., Moore,B.S., Penn,K., Jenkins,C., Udwary,D., Xiang,L., Gontang,E. and Richardson,P. (2007) Direct suubmission GenBank.