ISSar1

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009953 ND Salinispora arenicola
Salinispora arenicola CNS-205
DNA section
IS Length : 914 bp

Ends


IR Length : 14/17

IRL : GAGCCTTTTCCAAGCTGATCTTGCAGCTCAGGGTGGGTGTGGTAGCCCGG
IRR : GAGCCTTTTCATCCTGCGTAGCGGTTGGCTTCGACGTGGTGCAGGACGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GCACCACAGTACTGAAGGCG0
TCGCTTGTCCACTGCATGTAGGT3

DNA sequence

GAGCCTTTTCCAAGCTGATCTTGCAGCTCAGGGTGGGTGTGGTAGCCCGGTGATCGATGGGTGCGAGGCTCCAGGTAGGACAGCTGTCGACCAAGACTCG
AAGCCCCGACCGGGAGCCTCGCCATGCTGTCCTACCCCGCCACGATTCCGTTGTCCAGCCGCACCCTGAACCACCTCGCCGAACGCATCCGAGGCCACCG
CAAGCAGCGCCGATCCCGATGGCGGCGTCTCGATCCCGGCCGGCAGGCGCTGCTGGTCCTGGCCCATCTGCGTAACGGCGACACCTACACCCGACTCGCG
GCCGGCTTCGAGATCGGCGTCGCCACCGCCTGGCGGTACGTGCAGGAAGCGATAGCCCTGCTCAGTTCGGCAGCCGACGACCTGGACACCGCCATGGAAC
GCATCCGCCGACTGGCGTACGCGATCCTGGACGGCACCCTGATGCCGACTGACCGGATCGCCGACCAGAAGCCGTACTACTCCGGGAAACACAAGCACCA
CGGCGTGAACGTGCAGGTCATCGCCGACGCCGCTGGCCGGCTCGTCTGGGCTTCACCGGCGCTGCCCGGTTCGGTCCACGACCTGACCGCAGCCCGAACC
CACGGCATCATCGACGCGCTGAGCAGGGCAGACGTGATGACGTTCGCCGACATGGGCTACCAAGGAGCCCGCGGCAGCGTGCGCACCCCATTCAAGCGGC
ACCGCTTCCGCCCAAAGCTGTCACGCCGGCAGAAAGCCGTGAACCGCGCCCACGCGACAATCCGCGCCCGCGGCGAACGCGCGATCGCCACCCTCAAGAC
CTGGAAGATCCTGAACAAGCTGCGCTGCTGCCCACGCCGAGCGACCCCGATCGTGCAGGCCATCCTCGTCCTGCACCACGTCGAAGCCAACCGCTACGCA
GGATGAAAAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
783 bp260 aa124906+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLSYPATIPLSSRTLNHLAERIRGHRKQRRSRWRRLDPGRQALLVLAHLRNGDTYTRLAAGFEIGVATAWRYVQEAIALLSSAADDLDTAMERIRRLAYA
ILDGTLMPTDRIADQKPYYSGKHKHHGVNVQVIADAAGRLVWASPALPGSVHDLTAARTHGIIDALSRADVMTFADMGYQGARGSVRTPFKRHRFRPKLS
RRQKAVNRAHATIRARGERAIATLKTWKILNKLRCCPRRATPIVQAILVLHHVEANRYAG

 

Blast result :
Comments
ISSar1 is 72% aa similar to IS493.
References
1] ISfinder annotation (2010)

2] Penn,K., Jenkins,C., Nett,M., Udwary,D.W., Gontang,E.A., McGlinchey,R.P., Foster,B., Lapidus,A., Podell,S., Allen,E.E., Moore,B.S. and Jensen,P.R. (2009) ISME J 3 (10), 1193-1203

3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Foster,B., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Jensen,P.R., Moore,B.S., Penn,K., Jenkins,C., Udwary,D., Xiang,L., Gontang,E. and Richardson,P. (2007) Direct suubmission GenBank.