ISRhosp9

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FM202432 ND Rhodococcus sp.
Rhodococcus sp. PY11
DNA section
IS Length : 944 bp

Ends


IR Length : 21/25

IRL : GAGGTTTTCTCACCAGGAGTTCGCTGACGGCGGCCGGGGACATTCGGGCG
IRR : GAGGTTTTCTCACCAGGCGGGGGCTTGTAGGTGAAGAAGCACGAGGGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
GAACATCACTAGTGCTACCA0

DNA sequence

GAGGTTTTCTCACCAGGAGTTCGCTGACGGCGGCCGGGGACATTCGGGCGGTGTGGCGTGAGATGAGGACGTGGGGTCCTACCTGGTAGAGATCGTTTCG
ACCAAGAAGCAATCCCGAAGCAGGACCCCACGTGATTTCCTATCGTGCCACGCTCGACGTGCCCGAGCGCACCCTGGCCTTCGTCGCACGTGCCCTGGCC
GCGCATCGCACCCGAGTCGACCGCCGACCGTGGCAGCGGGCCGCAACCGTCTATGTCCAGGCGGTGATGGTGCTCCGCTGGTTCCGCGACGGCACCGACG
TCGCCGCCCTGGCGCGCGATGCCCGCGTGTCGGTGGCTACTGCCTACCGCTATCTGCACGAAGGCATCGACGTGATCGCTGCCCACGCCCCTGACCTGCA
CGAGGTCCTCGCCCACGGGAGTGCATCCGGGTGGGAACACGTCGGACTCGACGGCACCTTGATCGCCGCGACCCGCTGCCGGGAGCGCTCCGAAGCCGGA
CACGACTTGTGGTACTCGGGCAAACACCGCCGACACGGCGGCAACATCCAGGTCCTGACCGATCCGACCGGCTACCCGGTCTGGGTCTCCGACGTCGAAC
CCGGCTCGGTTCACGACATCACCGCTGCTCGACTCGGCGGAGTCCTCGGCGCCCTCTATGAGGCCGCCACCGGCGGGATGCCCACCCTCGCCGACAAGGG
TTACACCGGTGCCGGGATCGGTGTCCACACGCCGACCAAGGGCCGCGACCTCGATGCCGGCACTCGATGCCGCAACACACTTCTGTCCGCGATGCGCGCT
CCGGCGGAACGTGCGAATGCCCTGCTGAAGACCCGCTGGAAAGATTTACAACGAATCAGTCTGTGTCCGTGGAGGATCGGCGCGATAACCGCTGCCGCCC
TCGTGCTTCTTCACCTACAAGCCCCCGCCTGGTGAGAAAACCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
804 bp267 aa132935+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISYRATLDVPERTLAFVARALAAHRTRVDRRPWQRAATVYVQAVMVLRWFRDGTDVAALARDARVSVATAYRYLHEGIDVIAAHAPDLHEVLAHGSASG
WEHVGLDGTLIAATRCRERSEAGHDLWYSGKHRRHGGNIQVLTDPTGYPVWVSDVEPGSVHDITAARLGGVLGALYEAATGGMPTLADKGYTGAGIGVHT
PTKGRDLDAGTRCRNTLLSAMRAPAERANALLKTRWKDLQRISLCPWRIGAITAAALVLLHLQAPAW

 

Blast result :
Comments
ISRhosp9 is 59% IS470 et ISGeob1.
References
1] ISfinder annotation (2010)
2] Meskys,R. (2008) Direct submission GenBank.