ISRhosp9
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FM202432 | ND | Rhodococcus sp. | Rhodococcus sp. PY11 |
DNA section
IS Length : 944 bp
Ends
IR Length : 21/25
IRL : GAGGTTTTCTCACCAGGAGTTCGCTGACGGCGGCCGGGGACATTCGGGCG
IRR : GAGGTTTTCTCACCAGGCGGGGGCTTGTAGGTGAAGAAGCACGAGGGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAACATCACT | AGTGCTACCA | 0 |
DNA sequence
GAGGTTTTCTCACCAGGAGTTCGCTGACGGCGGCCGGGGACATTCGGGCGGTGTGGCGTGAGATGAGGACGTGGGGTCCTACCTGGTAGAGATCGTTTCG
ACCAAGAAGCAATCCCGAAGCAGGACCCCACGTGATTTCCTATCGTGCCACGCTCGACGTGCCCGAGCGCACCCTGGCCTTCGTCGCACGTGCCCTGGCC
GCGCATCGCACCCGAGTCGACCGCCGACCGTGGCAGCGGGCCGCAACCGTCTATGTCCAGGCGGTGATGGTGCTCCGCTGGTTCCGCGACGGCACCGACG
TCGCCGCCCTGGCGCGCGATGCCCGCGTGTCGGTGGCTACTGCCTACCGCTATCTGCACGAAGGCATCGACGTGATCGCTGCCCACGCCCCTGACCTGCA
CGAGGTCCTCGCCCACGGGAGTGCATCCGGGTGGGAACACGTCGGACTCGACGGCACCTTGATCGCCGCGACCCGCTGCCGGGAGCGCTCCGAAGCCGGA
CACGACTTGTGGTACTCGGGCAAACACCGCCGACACGGCGGCAACATCCAGGTCCTGACCGATCCGACCGGCTACCCGGTCTGGGTCTCCGACGTCGAAC
CCGGCTCGGTTCACGACATCACCGCTGCTCGACTCGGCGGAGTCCTCGGCGCCCTCTATGAGGCCGCCACCGGCGGGATGCCCACCCTCGCCGACAAGGG
TTACACCGGTGCCGGGATCGGTGTCCACACGCCGACCAAGGGCCGCGACCTCGATGCCGGCACTCGATGCCGCAACACACTTCTGTCCGCGATGCGCGCT
CCGGCGGAACGTGCGAATGCCCTGCTGAAGACCCGCTGGAAAGATTTACAACGAATCAGTCTGTGTCCGTGGAGGATCGGCGCGATAACCGCTGCCGCCC
TCGTGCTTCTTCACCTACAAGCCCCCGCCTGGTGAGAAAACCTC
ACCAAGAAGCAATCCCGAAGCAGGACCCCACGTGATTTCCTATCGTGCCACGCTCGACGTGCCCGAGCGCACCCTGGCCTTCGTCGCACGTGCCCTGGCC
GCGCATCGCACCCGAGTCGACCGCCGACCGTGGCAGCGGGCCGCAACCGTCTATGTCCAGGCGGTGATGGTGCTCCGCTGGTTCCGCGACGGCACCGACG
TCGCCGCCCTGGCGCGCGATGCCCGCGTGTCGGTGGCTACTGCCTACCGCTATCTGCACGAAGGCATCGACGTGATCGCTGCCCACGCCCCTGACCTGCA
CGAGGTCCTCGCCCACGGGAGTGCATCCGGGTGGGAACACGTCGGACTCGACGGCACCTTGATCGCCGCGACCCGCTGCCGGGAGCGCTCCGAAGCCGGA
CACGACTTGTGGTACTCGGGCAAACACCGCCGACACGGCGGCAACATCCAGGTCCTGACCGATCCGACCGGCTACCCGGTCTGGGTCTCCGACGTCGAAC
CCGGCTCGGTTCACGACATCACCGCTGCTCGACTCGGCGGAGTCCTCGGCGCCCTCTATGAGGCCGCCACCGGCGGGATGCCCACCCTCGCCGACAAGGG
TTACACCGGTGCCGGGATCGGTGTCCACACGCCGACCAAGGGCCGCGACCTCGATGCCGGCACTCGATGCCGCAACACACTTCTGTCCGCGATGCGCGCT
CCGGCGGAACGTGCGAATGCCCTGCTGAAGACCCGCTGGAAAGATTTACAACGAATCAGTCTGTGTCCGTGGAGGATCGGCGCGATAACCGCTGCCGCCC
TCGTGCTTCTTCACCTACAAGCCCCCGCCTGGTGAGAAAACCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
804 bp | 267 aa | 132 | 935 | + | No |
Chemistry : DDE
ORF sequence :
MISYRATLDVPERTLAFVARALAAHRTRVDRRPWQRAATVYVQAVMVLRWFRDGTDVAALARDARVSVATAYRYLHEGIDVIAAHAPDLHEVLAHGSASG
WEHVGLDGTLIAATRCRERSEAGHDLWYSGKHRRHGGNIQVLTDPTGYPVWVSDVEPGSVHDITAARLGGVLGALYEAATGGMPTLADKGYTGAGIGVHT
PTKGRDLDAGTRCRNTLLSAMRAPAERANALLKTRWKDLQRISLCPWRIGAITAAALVLLHLQAPAW
WEHVGLDGTLIAATRCRERSEAGHDLWYSGKHRRHGGNIQVLTDPTGYPVWVSDVEPGSVHDITAARLGGVLGALYEAATGGMPTLADKGYTGAGIGVHT
PTKGRDLDAGTRCRNTLLSAMRAPAERANALLKTRWKDLQRISLCPWRIGAITAAALVLLHLQAPAW
Blast result :
Comments
ISRhosp9 is 59% IS470 et ISGeob1.
References
1] ISfinder annotation (2010)
2] Meskys,R. (2008) Direct submission GenBank.
2] Meskys,R. (2008) Direct submission GenBank.