ISGeob1

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_013757 ND Geodermatophilus obscurus
Geodermatophilus obscurus DSM 43160
DNA section
IS Length : 1020 bp

Ends


IR Length : 15

IRL : GAGCCATTCCCAGTAGCCGAGGCGGGCAGGTCAGGGACACGCCGAGGGTG
IRR : GAGCCATTCTCAGTAACGACTCAGCCCGGTTGATCATCATGTGGTCCGGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCGACCGAGTAATGGCTGCC0

DNA sequence

GAGCCATTCCCAGTAGCCGAGGCGGGCAGGTCAGGGACACGCCGAGGGTGGCGAGATGGCCGGAAGGGGGCGCAGGACCTCGGTAGGAGGGACGTCCTTC
CACAGATGTCCAGCCGCACCGAGGTCGTGGGCGTGTCCGATCCTGTCAGCTACACCGCCGTGCTCCCGGTCAGGGAGTCCACCGTGTTGTTTGTGTCCGG
TCTGCTGGCCGCTGAGCGCCGTCGCCGAGGCACGCGAGGCCGGCGGCGGGCGCTGGGCTGCTGCCGGCAGGCGGTGCTGGTGCTGCGCTGGTTTCTCGAC
GGCACCCGGCTGGCCCAGCTGGCCGTCGACAACCGGATCGGCCGCTCGACGGCCTACCGGTATCTGCACAAGGGCATCGACGTCCTCGCCACGGCGGCAC
CGGGGCTGCGCGGAGCGCTGCTGGCCGCCCGCGCCGCCGGGCATGCGCACGTCACCGTGGACGGCACCCTGATCCGCACCGACCGCTGCCATACCCCGGG
TCCGACCGCACGCGGCGACCGGCCGGAGCGGCGGGTGGACCTGTGGTGGTCGGGCAAGCACACCGCCCACGGCGGCAACGTGCAGGTCATCGCCGCCCCG
GACGGCTGGCCGCTGTGGACGTCTGCGGTCCGGCCTGGCCGCGAGCACGACACCACCGCGCTGCGCGCCCACGCCCAGGCGCTGCCGCTGCTGGCCGAGT
GGACCGACCAGGTCCACGCTGTGCTGGCCGACCTGGGCTACGAAGGCGAGCGGGCGGCGCTGACCACGCCGATCAAGCACCGCGCCGGTCATCGGTTGAC
CGCCGACCAGCACACCGTCAATCTGCTGCACGCGGCCACCCGGGCGCCGGCCGAACGCGGCAACTCGCTGCTCAAGACCACCTTCAAGGCGCTGCGCCGG
GTCAGCCTCTGCCCCTGGCGCATCGGCGCCAGCACCGCCGCCGCCCTTGTCCTGCTGCACCGTGAGCACGACCGGACCACATGATGATCAACCGGGCTGA
GTCGTTACTGAGAATGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
879 bp292 aa106984+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSRTEVVGVSDPVSYTAVLPVRESTVLFVSGLLAAERRRRGTRGRRRALGCCRQAVLVLRWFLDGTRLAQLAVDNRIGRSTAYRYLHKGIDVLATAAPG
LRGALLAARAAGHAHVTVDGTLIRTDRCHTPGPTARGDRPERRVDLWWSGKHTAHGGNVQVIAAPDGWPLWTSAVRPGREHDTTALRAHAQALPLLAEWT
DQVHAVLADLGYEGERAALTTPIKHRAGHRLTADQHTVNLLHAATRAPAERGNSLLKTTFKALRRVSLCPWRIGASTAAALVLLHREHDRTT

 

Blast result :
Comments
ISGeob1 is 65% aa similar to ISFsp2.
References
1] ISfinder annotation (2010).

2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Kyrpides,N., Mavromatis,K., Ivanova,N., Munk,A.C., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Markowitz,V., Cheng,J.-F., Hugenholtz,P., Woyke,T., Wu,D., Jando,M., Schneider,S., Klenk,H.-P. and Eisen,J.A. (2010) Direct submission GenBank.