ISFsp2
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009921 | ND | Frankia sp. | Frankia sp. EAN1pec |
DNA section
IS Length : 1040 bp
Ends
IR Length : 25/30
IRL : GAGCCATTCCCGGCAACGATCCGTAACGTTCAGTGACTATCGGGCGGTGT
IRR : GAGCCTTTCCCGGTAACGATTCGTCACCTTGCGTAGCAACAGTTCCGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGACGCAC | AGT | GGCCATCACC | 3 |
GTATCCCATG | ATT | GTCTTTCCTT | 3 |
CGACTCGTTG | ACT | GAGCTACCGG | 3 |
GGGGTTGGTC | AGT | GTCCTGTCGG | 3 |
CGAACCTATT | AGTCAGCTAG | 0 |
DNA sequence
GAGCCATTCCCGGCAACGATCCGTAACGTTCAGTGACTATCGGGCGGTGTGAGCGTCCCCGGGGCTGCGACGACGAAGACGCGGGGCTCCGATAGGAAGT
TGTTCCGACCAAAGAGCAACTCCGAAGGAACCCCGCGCCTCCATGAGTTTCACATACACCGCCGAGTTGCCCCTCAGCGATCACACCGTCTTCCGCCTGG
CGGGTCTTCTCGTCGCGGAGCGTCAGCGTCGCGGCACCCGCAACGGCACCCGCACGCTGTCCACGTTGGAACAGGCGGTCATGGTCCTGCGCTGGTTCTG
TGACGGCACCAGGACCAGCCGGCTCTTCAAGGATCACGGGGTGTCCCGGTCGGTGGGCTACCGCTACCTGCACGAGGGCATCGCCGTGCTTGCCTGGCAA
GCCCCTGACCTGCGCGAAGCGCTGATGCGCGCCAGGATCGCCGGCTACGGCCACCTCATCATCGACGGTACGATCATCGAGACCGACCGGCTGCGCATGC
CCGGCCCGACCGAGGGCGTGGACCTGTGGTGGTCCGGCAAGATCTCCAACCACGGCGGCAACATCCAGATCCTCTCGGCCCCCGACGACGGCTGGCCGCT
GTGGGTCTCGGACGTCAGGCCCGGCCGCGAGCACGACTCGACCGCGCTGTGCGCCGGAGGCGCGCAGCCGATCCTTGAGGAATGGGCCGCCGACCTGCAC
GAGGTCCTGTTCGACCTCGGTTACGAAGGGTTGGGTAGCCCGGCCGGACCGCTCGCGACCGCCTACAAGAAGCCCAAGGGCGGCGCACTCACCGACGAAC
AGAAGGCGCACAACCGGGTCCACAACGCGCTGCGCGCCGTCGGCGAACGCGCGAACGCGCTGCTCAAGGTCACCTTCCGGCTGCTCCGCAACATCACGAT
CGACCCCTGGAAGATCGGACTCGTCGCGAAAGCCGCCCTCGTCATCCTCCACACCGAGCACCGCAGGACTGCCTGAACCCCAACACCGCAACACGGAACT
GTTGCTACGCAAGGTGACGAATCGTTACCGGGAAAGGCTC
TGTTCCGACCAAAGAGCAACTCCGAAGGAACCCCGCGCCTCCATGAGTTTCACATACACCGCCGAGTTGCCCCTCAGCGATCACACCGTCTTCCGCCTGG
CGGGTCTTCTCGTCGCGGAGCGTCAGCGTCGCGGCACCCGCAACGGCACCCGCACGCTGTCCACGTTGGAACAGGCGGTCATGGTCCTGCGCTGGTTCTG
TGACGGCACCAGGACCAGCCGGCTCTTCAAGGATCACGGGGTGTCCCGGTCGGTGGGCTACCGCTACCTGCACGAGGGCATCGCCGTGCTTGCCTGGCAA
GCCCCTGACCTGCGCGAAGCGCTGATGCGCGCCAGGATCGCCGGCTACGGCCACCTCATCATCGACGGTACGATCATCGAGACCGACCGGCTGCGCATGC
CCGGCCCGACCGAGGGCGTGGACCTGTGGTGGTCCGGCAAGATCTCCAACCACGGCGGCAACATCCAGATCCTCTCGGCCCCCGACGACGGCTGGCCGCT
GTGGGTCTCGGACGTCAGGCCCGGCCGCGAGCACGACTCGACCGCGCTGTGCGCCGGAGGCGCGCAGCCGATCCTTGAGGAATGGGCCGCCGACCTGCAC
GAGGTCCTGTTCGACCTCGGTTACGAAGGGTTGGGTAGCCCGGCCGGACCGCTCGCGACCGCCTACAAGAAGCCCAAGGGCGGCGCACTCACCGACGAAC
AGAAGGCGCACAACCGGGTCCACAACGCGCTGCGCGCCGTCGGCGAACGCGCGAACGCGCTGCTCAAGGTCACCTTCCGGCTGCTCCGCAACATCACGAT
CGACCCCTGGAAGATCGGACTCGTCGCGAAAGCCGCCCTCGTCATCCTCCACACCGAGCACCGCAGGACTGCCTGAACCCCAACACCGCAACACGGAACT
GTTGCTACGCAAGGTGACGAATCGTTACCGGGAAAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
834 bp | 277 aa | 143 | 976 | + | No |
Chemistry : DDE
ORF sequence :
MSFTYTAELPLSDHTVFRLAGLLVAERQRRGTRNGTRTLSTLEQAVMVLRWFCDGTRTSRLFKDHGVSRSVGYRYLHEGIAVLAWQAPDLREALMRARIA
GYGHLIIDGTIIETDRLRMPGPTEGVDLWWSGKISNHGGNIQILSAPDDGWPLWVSDVRPGREHDSTALCAGGAQPILEEWAADLHEVLFDLGYEGLGSP
AGPLATAYKKPKGGALTDEQKAHNRVHNALRAVGERANALLKVTFRLLRNITIDPWKIGLVAKAALVILHTEHRRTA
GYGHLIIDGTIIETDRLRMPGPTEGVDLWWSGKISNHGGNIQILSAPDDGWPLWVSDVRPGREHDSTALCAGGAQPILEEWAADLHEVLFDLGYEGLGSP
AGPLATAYKKPKGGALTDEQKAHNRVHNALRAVGERANALLKVTFRLLRNITIDPWKIGLVAKAALVILHTEHRRTA
Blast result :
Comments
ISFsp2 is 93% aa similar to ISFsp7.
References
1] ISfinder annotation (2010).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (2007) Direct submission GenBank.