ISFsp2

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009921 ND Frankia sp.
Frankia sp. EAN1pec
DNA section
IS Length : 1040 bp

Ends


IR Length : 25/30

IRL : GAGCCATTCCCGGCAACGATCCGTAACGTTCAGTGACTATCGGGCGGTGT
IRR : GAGCCTTTCCCGGTAACGATTCGTCACCTTGCGTAGCAACAGTTCCGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
CCGGACGCACAGTGGCCATCACC3
GTATCCCATGATTGTCTTTCCTT3
CGACTCGTTGACTGAGCTACCGG3
GGGGTTGGTCAGTGTCCTGTCGG3
CGAACCTATTAGTCAGCTAG0

DNA sequence

GAGCCATTCCCGGCAACGATCCGTAACGTTCAGTGACTATCGGGCGGTGTGAGCGTCCCCGGGGCTGCGACGACGAAGACGCGGGGCTCCGATAGGAAGT
TGTTCCGACCAAAGAGCAACTCCGAAGGAACCCCGCGCCTCCATGAGTTTCACATACACCGCCGAGTTGCCCCTCAGCGATCACACCGTCTTCCGCCTGG
CGGGTCTTCTCGTCGCGGAGCGTCAGCGTCGCGGCACCCGCAACGGCACCCGCACGCTGTCCACGTTGGAACAGGCGGTCATGGTCCTGCGCTGGTTCTG
TGACGGCACCAGGACCAGCCGGCTCTTCAAGGATCACGGGGTGTCCCGGTCGGTGGGCTACCGCTACCTGCACGAGGGCATCGCCGTGCTTGCCTGGCAA
GCCCCTGACCTGCGCGAAGCGCTGATGCGCGCCAGGATCGCCGGCTACGGCCACCTCATCATCGACGGTACGATCATCGAGACCGACCGGCTGCGCATGC
CCGGCCCGACCGAGGGCGTGGACCTGTGGTGGTCCGGCAAGATCTCCAACCACGGCGGCAACATCCAGATCCTCTCGGCCCCCGACGACGGCTGGCCGCT
GTGGGTCTCGGACGTCAGGCCCGGCCGCGAGCACGACTCGACCGCGCTGTGCGCCGGAGGCGCGCAGCCGATCCTTGAGGAATGGGCCGCCGACCTGCAC
GAGGTCCTGTTCGACCTCGGTTACGAAGGGTTGGGTAGCCCGGCCGGACCGCTCGCGACCGCCTACAAGAAGCCCAAGGGCGGCGCACTCACCGACGAAC
AGAAGGCGCACAACCGGGTCCACAACGCGCTGCGCGCCGTCGGCGAACGCGCGAACGCGCTGCTCAAGGTCACCTTCCGGCTGCTCCGCAACATCACGAT
CGACCCCTGGAAGATCGGACTCGTCGCGAAAGCCGCCCTCGTCATCCTCCACACCGAGCACCGCAGGACTGCCTGAACCCCAACACCGCAACACGGAACT
GTTGCTACGCAAGGTGACGAATCGTTACCGGGAAAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
834 bp277 aa143976+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSFTYTAELPLSDHTVFRLAGLLVAERQRRGTRNGTRTLSTLEQAVMVLRWFCDGTRTSRLFKDHGVSRSVGYRYLHEGIAVLAWQAPDLREALMRARIA
GYGHLIIDGTIIETDRLRMPGPTEGVDLWWSGKISNHGGNIQILSAPDDGWPLWVSDVRPGREHDSTALCAGGAQPILEEWAADLHEVLFDLGYEGLGSP
AGPLATAYKKPKGGALTDEQKAHNRVHNALRAVGERANALLKVTFRLLRNITIDPWKIGLVAKAALVILHTEHRRTA

 

Blast result :
Comments
ISFsp2 is 93% aa similar to ISFsp7.
References
1] ISfinder annotation (2010).

2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E. and Richardson,P. (2007) Direct submission GenBank.