ISHvo1
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_013966 | ND | Haloferax volcanii | Haloferax volcanii DS2 plasmid pHV4 |
DNA section
IS Length : 938 bp
Ends
IR Length : 14
IRL : GGCTCTGGTGAATCACTAGACGGCGTCGGTTTCGACCGGTAGAATTTGGA
IRR : GGCTCTGGTGAATCGCCATACAGCGGTTGATTTGGCTATGTTGCGGCACG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTACCCTTTC | TTTGAACG | GTATTCAACG | 8 |
DNA sequence
GGCTCTGGTGAATCACTAGACGGCGTCGGTTTCGACCGGTAGAATTTGGAAGATGAAGCGGGAAACCGTCGATGCTCTATGTCGAAAATCTCCCGCTTCA
CGAAGAAGGCGGTCACGTTGGCTAAAAATGTTGTTGGTGACCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCTCTCGTATC
GCTGCACTGTCTGCGGATTTACCTCGATGAGTCGTACCGCAACGCACTGGATCTGCTGAGCGAAATGCCGCATATTCTCGCCGAGATCGGCCTCGAAGAG
GGCGATCTCCCTGATCACTCGACACTAGTTAAGGCGTTTGATAGGTTTCAGATGAAGGTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CCTCGGGTCACGCCGCCATCGATGCCACCTTTTTTGACCGCGAAAACGCTAGCAAGCACTACTGCCGCCGCACGAATTACCACGTTCAGACACTCAAAGC
GACGGCTCTCGTCGATACGCAAACGCAAGCTGTTCTCGACGTTCATTGTACGACCGAGAAGACCCACGACACACAACTCGGCTGGCAGGTCGCCTGCCGC
AACGCAGGCGACCTGCACAGCCTCGCCGCTGACAAAGGCTACGACTGGATGCAGTTACGCGAAAAACTACGCGAGGAAGGCGTGAGACCGCTGATTAAAC
ATCGTATCTTCCGGCCCATCGACCACGCGCATAACGCGCGGGTCGATGGGCCTCGATACCGCCAGAGATCGATGTGTGAGACTGTCTTCTCGTCGATCAA
GCGCACGCACGGCGACGCCGTGCGAGCGCGAACGTGGTACCGTGAATTTCGTGAACTCGTTTTGAAATGTGTCGTTCACAATATCAAGCGTGCCGCAACA
TAGCCAAATCAACCGCTGTATGGCGATTCACCAGAGCC
CGAAGAAGGCGGTCACGTTGGCTAAAAATGTTGTTGGTGACCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCTCTCGTATC
GCTGCACTGTCTGCGGATTTACCTCGATGAGTCGTACCGCAACGCACTGGATCTGCTGAGCGAAATGCCGCATATTCTCGCCGAGATCGGCCTCGAAGAG
GGCGATCTCCCTGATCACTCGACACTAGTTAAGGCGTTTGATAGGTTTCAGATGAAGGTCTGGCGAGTGCTGCTGCGCCTGTCGGCGCAGCTGCACGACC
CCTCGGGTCACGCCGCCATCGATGCCACCTTTTTTGACCGCGAAAACGCTAGCAAGCACTACTGCCGCCGCACGAATTACCACGTTCAGACACTCAAAGC
GACGGCTCTCGTCGATACGCAAACGCAAGCTGTTCTCGACGTTCATTGTACGACCGAGAAGACCCACGACACACAACTCGGCTGGCAGGTCGCCTGCCGC
AACGCAGGCGACCTGCACAGCCTCGCCGCTGACAAAGGCTACGACTGGATGCAGTTACGCGAAAAACTACGCGAGGAAGGCGTGAGACCGCTGATTAAAC
ATCGTATCTTCCGGCCCATCGACCACGCGCATAACGCGCGGGTCGATGGGCCTCGATACCGCCAGAGATCGATGTGTGAGACTGTCTTCTCGTCGATCAA
GCGCACGCACGGCGACGCCGTGCGAGCGCGAACGTGGTACCGTGAATTTCGTGAACTCGTTTTGAAATGTGTCGTTCACAATATCAAGCGTGCCGCAACA
TAGCCAAATCAACCGCTGTATGGCGATTCACCAGAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 825 bp | 274 aa | 79 | 903 | + | No |
Chemistry : DDE
ORF sequence :
MSKISRFTKKAVTLAKNVVGDRGEVAAPEGGGGFADYALVSLHCLRIYLDESYRNALDLLSEMPHILAEIGLEEGDLPDHSTLVKAFDRFQMKVWRVLLR
LSAQLHDPSGHAAIDATFFDRENASKHYCRRTNYHVQTLKATALVDTQTQAVLDVHCTTEKTHDTQLGWQVACRNAGDLHSLAADKGYDWMQLREKLREE
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRSMCETVFSSIKRTHGDAVRARTWYREFRELVLKCVVHNIKRAAT
LSAQLHDPSGHAAIDATFFDRENASKHYCRRTNYHVQTLKATALVDTQTQAVLDVHCTTEKTHDTQLGWQVACRNAGDLHSLAADKGYDWMQLREKLREE
GVRPLIKHRIFRPIDHAHNARVDGPRYRQRSMCETVFSSIKRTHGDAVRARTWYREFRELVLKCVVHNIKRAAT
Blast result :
Comments
ISHvo1 is 92% aa similar to ISH9.
References
1] ISfinder annotation (2010).
2] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605
3] Madupu,R.M., Hartman,A.L., Norais,C., Badger,J.A., Delma,S., Haldenby,S., Khouri,H., Ren,Q., Lowe,T., Robinson,J., Furlow,J.M., Pohlschroder,M., Pfeiffer,T., Allers,T., Daniels,C. and Eisen,J.A. (2010) Direct submission GenBank.
2] Hartman,A.L., Norais,C., Badger,J.H., Delmas,S., Haldenby,S., Madupu,R., Robinson,J., Khouri,H., Ren,Q., Lowe,T.M., Maupin-Furlow,J., Pohlschroder,M., Daniels,C., Pfeiffer,F., Allers,T. and Eisen,J.A. (2010) PLoS ONE 5 (3), E9605
3] Madupu,R.M., Hartman,A.L., Norais,C., Badger,J.A., Delma,S., Haldenby,S., Khouri,H., Ren,Q., Lowe,T., Robinson,J., Furlow,J.M., Pohlschroder,M., Pfeiffer,T., Allers,T., Daniels,C. and Eisen,J.A. (2010) Direct submission GenBank.