ISSis4

  • Family ISNCY
  • Group ISC1217
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012588 ND Sulfolobus islandicus
Sulfolobus islandicus M.14.25
DNA section
IS Length : 1205 bp

Ends


IR Length : 18

IRL : TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGTTCACGGTACTATCG
IRR : TAGCAGTTGTTCTACTTTAACGCAGCTTAAAGATTTTCATCAAACCCAGA

Insertion site


Left flankDirect repeatRight flankDR Length
AGATACTTTAAATATATTAAAGGAGC6
ACTCTATAACTATTATTTATATTATA6
ATTAATTAAATTTCGTAAACTCATTT6
AAGATCATTAAAATATCCAGTGCTGT6
AAGGCTCAATAATGTTATAAACTTACT7
TATCCCTTTTTCTGTTAGTTTTTCGTG7
CCTTACAATTACCACTATAATAGGTAAA8

DNA sequence

TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGTTCACGGTACTATCGATAAAGTTTTTAGATTTACGTTTAGTTGATTAAAAACTGTGAACCCCGAG
AAAGAGCTGGACATTGCGAGGAGCGAGTTCATTAAGTCCTTCAACTACCTGATTGGAACACTGAGGATGAACGGATTGAGCAGAAAGGTCGCAGTAGGCT
TAGCACTCATGACCTTGATAGGAGGAAGGGCCAGCATTAGAAACGCATCCATCACGTTCAAGCTAAACTACGCCAACTTGTTAAAAACACTGGAGAACCT
AGAGAACACATGGAGTGACTACCTCGAGGCGTTAAGCAAAGTGATAGTTGGACCGGTAGTAGTGATAATTGACGACACCTTCGACCACAAACTCTATTCC
AGAGTAGAGGGCATAGCAAGCAAGTACGGGAACTACTTAGCGTGGTGCTCCACGCACAAGAGATTCGAGCCCGGCATACAAGTCCTCACAATAGCCTTAT
ACGACTTAGCCATGGGAAAGAGCTATCTGATAGGAGCTTTCCCATACGCCACGAGAAAGATGTGGGAAAGCGGGATGGTAAGCGAGTTCAAGACCAAGAT
CGAGATGGCTGCGGAAATTATCGAGGTTCTCAAAGAGCGATTCCATGTGGCGAGGGTAGTGTTTGACTCCTGGTATTGGTCGGAGAAGCTGGTGAAGGGT
AGTGTAGTTTCTGAGTTGAAGTCTAATAGGAGGCTTCTAAGGGTTAGGCCTTTGGAGGGAGAGAAGACGTTGGGGGTGGAGGGGCACCCCCATGTCGGAG
ATCTCCCTCCAGGGTCTTACTTAGCTGAGTTGACCCTAGGAGACCAAGTTATTACTATAAAGTTGTTAATACTGGTATATAAAGATAACAGGCTCAACTT
GTACTCCACTGACCTTAACTTGAGCGATGAGGAGATAGAGGTAACTTGGAAGATTAGGTGGGAGATAGAGAAGTTACACAAGGATATTAAGGCTCTGGGT
ATGCAAGATTCCTCTTTCCTCAAGAGGAAGAGGCTTCAAGGTTATCTGCTCCTCTTCGTGATGGCGGTTAACACGGTCAGAGATTTGATCAGCTCCCTTA
ACTTGAAGAGCGTGGAGGAACTTCTCCGGTTCGTTGAAATACGTTTAGGAGGTGCTCTGGGTTTGATGAAAATCTTTAAGCTGCGTTAAAGTAGAACAAC
TGCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1101 bp366 aa891189+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNPEKELDIARSEFIKSFNYLIGTLRMNGLSRKVAVGLALMTLIGGRASIRNASITFKLNYANLLKTLENLENTWSDYLEALSKVIVGPVVVIIDDTFDH
KLYSRVEGIASKYGNYLAWCSTHKRFEPGIQVLTIALYDLAMGKSYLIGAFPYATRKMWESGMVSEFKTKIEMAAEIIEVLKERFHVARVVFDSWYWSEK
LVKGSVVSELKSNRRLLRVRPLEGEKTLGVEGHPHVGDLPPGSYLAELTLGDQVITIKLLILVYKDNRLNLYSTDLNLSDEEIEVTWKIRWEIEKLHKDI
KALGMQDSSFLKRKRLQGYLLLFVMAVNTVRDLISSLNLKSVEELLRFVEIRLGGALGLMKIFKLR

 

Blast result :
Comments
ISSis4 is 96% aa similar to ISC1205.
References
1] ISfinder annotation (2010)