ISSis4
- Family ISNCY
- Group ISC1217
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012588 | ND | Sulfolobus islandicus | Sulfolobus islandicus M.14.25 |
DNA section
IS Length : 1205 bp
Ends
IR Length : 18
IRL : TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGTTCACGGTACTATCG
IRR : TAGCAGTTGTTCTACTTTAACGCAGCTTAAAGATTTTCATCAAACCCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGATACTTTA | AATATA | TTAAAGGAGC | 6 |
ACTCTATAAC | TATTAT | TTATATTATA | 6 |
ATTAATTAAA | TTTCGT | AAACTCATTT | 6 |
AAGATCATTA | AAATAT | CCAGTGCTGT | 6 |
AAGGCTCAAT | AATGTTA | TAAACTTACT | 7 |
TATCCCTTTT | TCTGTTA | GTTTTTCGTG | 7 |
CCTTACAATT | ACCACTAT | AATAGGTAAA | 8 |
DNA sequence
TAGCAGTTGTTCTACTTTTCCTCGGTAATACAAAGTTCACGGTACTATCGATAAAGTTTTTAGATTTACGTTTAGTTGATTAAAAACTGTGAACCCCGAG
AAAGAGCTGGACATTGCGAGGAGCGAGTTCATTAAGTCCTTCAACTACCTGATTGGAACACTGAGGATGAACGGATTGAGCAGAAAGGTCGCAGTAGGCT
TAGCACTCATGACCTTGATAGGAGGAAGGGCCAGCATTAGAAACGCATCCATCACGTTCAAGCTAAACTACGCCAACTTGTTAAAAACACTGGAGAACCT
AGAGAACACATGGAGTGACTACCTCGAGGCGTTAAGCAAAGTGATAGTTGGACCGGTAGTAGTGATAATTGACGACACCTTCGACCACAAACTCTATTCC
AGAGTAGAGGGCATAGCAAGCAAGTACGGGAACTACTTAGCGTGGTGCTCCACGCACAAGAGATTCGAGCCCGGCATACAAGTCCTCACAATAGCCTTAT
ACGACTTAGCCATGGGAAAGAGCTATCTGATAGGAGCTTTCCCATACGCCACGAGAAAGATGTGGGAAAGCGGGATGGTAAGCGAGTTCAAGACCAAGAT
CGAGATGGCTGCGGAAATTATCGAGGTTCTCAAAGAGCGATTCCATGTGGCGAGGGTAGTGTTTGACTCCTGGTATTGGTCGGAGAAGCTGGTGAAGGGT
AGTGTAGTTTCTGAGTTGAAGTCTAATAGGAGGCTTCTAAGGGTTAGGCCTTTGGAGGGAGAGAAGACGTTGGGGGTGGAGGGGCACCCCCATGTCGGAG
ATCTCCCTCCAGGGTCTTACTTAGCTGAGTTGACCCTAGGAGACCAAGTTATTACTATAAAGTTGTTAATACTGGTATATAAAGATAACAGGCTCAACTT
GTACTCCACTGACCTTAACTTGAGCGATGAGGAGATAGAGGTAACTTGGAAGATTAGGTGGGAGATAGAGAAGTTACACAAGGATATTAAGGCTCTGGGT
ATGCAAGATTCCTCTTTCCTCAAGAGGAAGAGGCTTCAAGGTTATCTGCTCCTCTTCGTGATGGCGGTTAACACGGTCAGAGATTTGATCAGCTCCCTTA
ACTTGAAGAGCGTGGAGGAACTTCTCCGGTTCGTTGAAATACGTTTAGGAGGTGCTCTGGGTTTGATGAAAATCTTTAAGCTGCGTTAAAGTAGAACAAC
TGCTA
AAAGAGCTGGACATTGCGAGGAGCGAGTTCATTAAGTCCTTCAACTACCTGATTGGAACACTGAGGATGAACGGATTGAGCAGAAAGGTCGCAGTAGGCT
TAGCACTCATGACCTTGATAGGAGGAAGGGCCAGCATTAGAAACGCATCCATCACGTTCAAGCTAAACTACGCCAACTTGTTAAAAACACTGGAGAACCT
AGAGAACACATGGAGTGACTACCTCGAGGCGTTAAGCAAAGTGATAGTTGGACCGGTAGTAGTGATAATTGACGACACCTTCGACCACAAACTCTATTCC
AGAGTAGAGGGCATAGCAAGCAAGTACGGGAACTACTTAGCGTGGTGCTCCACGCACAAGAGATTCGAGCCCGGCATACAAGTCCTCACAATAGCCTTAT
ACGACTTAGCCATGGGAAAGAGCTATCTGATAGGAGCTTTCCCATACGCCACGAGAAAGATGTGGGAAAGCGGGATGGTAAGCGAGTTCAAGACCAAGAT
CGAGATGGCTGCGGAAATTATCGAGGTTCTCAAAGAGCGATTCCATGTGGCGAGGGTAGTGTTTGACTCCTGGTATTGGTCGGAGAAGCTGGTGAAGGGT
AGTGTAGTTTCTGAGTTGAAGTCTAATAGGAGGCTTCTAAGGGTTAGGCCTTTGGAGGGAGAGAAGACGTTGGGGGTGGAGGGGCACCCCCATGTCGGAG
ATCTCCCTCCAGGGTCTTACTTAGCTGAGTTGACCCTAGGAGACCAAGTTATTACTATAAAGTTGTTAATACTGGTATATAAAGATAACAGGCTCAACTT
GTACTCCACTGACCTTAACTTGAGCGATGAGGAGATAGAGGTAACTTGGAAGATTAGGTGGGAGATAGAGAAGTTACACAAGGATATTAAGGCTCTGGGT
ATGCAAGATTCCTCTTTCCTCAAGAGGAAGAGGCTTCAAGGTTATCTGCTCCTCTTCGTGATGGCGGTTAACACGGTCAGAGATTTGATCAGCTCCCTTA
ACTTGAAGAGCGTGGAGGAACTTCTCCGGTTCGTTGAAATACGTTTAGGAGGTGCTCTGGGTTTGATGAAAATCTTTAAGCTGCGTTAAAGTAGAACAAC
TGCTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1101 bp | 366 aa | 89 | 1189 | + | No |
Chemistry : Unknow
ORF sequence :
MNPEKELDIARSEFIKSFNYLIGTLRMNGLSRKVAVGLALMTLIGGRASIRNASITFKLNYANLLKTLENLENTWSDYLEALSKVIVGPVVVIIDDTFDH
KLYSRVEGIASKYGNYLAWCSTHKRFEPGIQVLTIALYDLAMGKSYLIGAFPYATRKMWESGMVSEFKTKIEMAAEIIEVLKERFHVARVVFDSWYWSEK
LVKGSVVSELKSNRRLLRVRPLEGEKTLGVEGHPHVGDLPPGSYLAELTLGDQVITIKLLILVYKDNRLNLYSTDLNLSDEEIEVTWKIRWEIEKLHKDI
KALGMQDSSFLKRKRLQGYLLLFVMAVNTVRDLISSLNLKSVEELLRFVEIRLGGALGLMKIFKLR
KLYSRVEGIASKYGNYLAWCSTHKRFEPGIQVLTIALYDLAMGKSYLIGAFPYATRKMWESGMVSEFKTKIEMAAEIIEVLKERFHVARVVFDSWYWSEK
LVKGSVVSELKSNRRLLRVRPLEGEKTLGVEGHPHVGDLPPGSYLAELTLGDQVITIKLLILVYKDNRLNLYSTDLNLSDEEIEVTWKIRWEIEKLHKDI
KALGMQDSSFLKRKRLQGYLLLFVMAVNTVRDLISSLNLKSVEELLRFVEIRLGGALGLMKIFKLR
Blast result :
Comments
ISSis4 is 96% aa similar to ISC1205.
References
1] ISfinder annotation (2010)