ISSto15

  • Family ISNCY
  • Group ISC1217
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_003106 ND Sulfolobus tokodaii
Sulfolobus tokodaii str. 7
DNA section
IS Length : 1145 bp

Ends


IR Length : 8

IRL : TAGCATTTATAGGAAAATCCTTGCAGTTTAAGGGAACCTTAAAAACTTTT
IRR : TAGCATTTTACGTCTTTTTCCTTCTCTTAAACAGTTTCTTAATCCCACCC

Insertion site


Left flankDirect repeatRight flankDR Length
CCTTAATAAAACCGTGAATAAGCATC6

DNA sequence

TAGCATTTATAGGAAAATCCTTGCAGTTTAAGGGAACCTTAAAAACTTTTTAAAAATTAGCCAAACAAAATATCGGATGAATACAAACTCATTACTCCAA
GAGTATTACAAGGCACTCCGAGAAGCATTACAACAAATCTTCACAGCCTTGACTAGCGTGAGAAAAGACACACTAACAAGACTAGTGCTAGGAGGAGTTA
TGGGTGGAACAGCAACAGAAATAGCACAAGCAGTAGACATGGACTACGAGACAGTACTAAAAAACCTTGACAAATTGGCAAACATAAACTTGATCAAAAT
AGTAAAAGAAATAGTAAAAGACCACCCAGTACAACTAATAATAGACGACACACACAACCACAAAGCAAGAGCACTACCAGTATCAAGAAACGGAACACAA
GCCTTTTACTGCAGAGAACACAAAAGATACGAACCAGCAATACAACTCCTAATAATAGCAATAAAAGACCTATACACAAACGAAACCTACATTATAACAA
TAATACCATACATACCACAAAAAGTTGCCGAAATACTCAAGGAAAGGGGAGAAAAAGCAGAATACAAAACAAAAATCCAACTATACCTAGAAACACTACC
AACAATCCTAAACGAGTACAACGTTACCACCATCTCATTCGACTCATGGTACGTAAACTCAAAAACCCTACTACCTAACACTATCGGGGAACTCAAGGCA
AACTCACGTGTTGTCGAGGGTGACAGACACGTGCCAGTTGCCGAGTTCCCCGAAGGGGAATACCTAGTAGAATACCTAGGTACCCCCATAAAACTACTCG
TAATAGACAATTATAAAGACATGGGAAAAAGATACTTCTTCTCAACCAACACGAAAGACACACCAGAAGACATAATAACAACATGGGAAAACCGTTGGGA
TATTGAAGTAGTAATTAGGGAGCTAAAGGCTCTAGGCTTGGAGAAGAGCTCTTTCCTCACATGGATTAGGAACAAGGGTTTCATAACCTTGAAAGCCCTC
TCCCTCCTCTTAGTCCTCTCATTTAAGTATTCTCTTGGCTTAAGGTTAGGAGCCAAGAGGATATCAAGGATGATAAAAAGTATTTATCAGTCTTTGGGTG
GGATTAAGAAACTGTTTAAGAGAAGGAAAAAGACGTAAAATGCTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1062 bp353 aa771138+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNTNSLLQEYYKALREALQQIFTALTSVRKDTLTRLVLGGVMGGTATEIAQAVDMDYETVLKNLDKLANINLIKIVKEIVKDHPVQLIIDDTHNHKARAL
PVSRNGTQAFYCREHKRYEPAIQLLIIAIKDLYTNETYIITIIPYIPQKVAEILKERGEKAEYKTKIQLYLETLPTILNEYNVTTISFDSWYVNSKTLLP
NTIGELKANSRVVEGDRHVPVAEFPEGEYLVEYLGTPIKLLVIDNYKDMGKRYFFSTNTKDTPEDIITTWENRWDIEVVIRELKALGLEKSSFLTWIRNK
GFITLKALSLLLVLSFKYSLGLRLGAKRISRMIKSIYQSLGGIKKLFKRRKKT

 

Blast result :
Comments
ISSto15 is 97% aa similar to ISSto10.
References
1] ISfinder annotation (2010)