ISClbo1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABCC02000040 ND Clostridium bolteae
Clostridium bolteae ATCC BAA-613
DNA section
IS Length : 1603 bp

Ends


IR Length : 15

IRL : CAGACTGTAGACAAATTCCGAGGACAAGTGCCTCGGAATTTCTTCGCGAT
IRR : CAGACTGTAGACAAACTGGTTTTGGGCTTTGTATCCCAAAGCCAGTTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
CCATTTTGAAAGAAGGCGGCATGAAGCCGCCTTCCTGGTTTCATC25

DNA sequence

CAGACTGTAGACAAATTCCGAGGACAAGTGCCTCGGAATTTCTTCGCGATTGAGCCAGAAAAGTCAGCACTTACAAGACTTTGAGGCTCTTTTTTGGTAT
AATAGATGTATCAAATACAGGCGGTGAGATGCTTATGATGACACAGAATGCGGATAAAAAAAGAGAACAGATTCAGTTGTTTTGCATGGATGACATGGTT
CCACAGGACCATCTGCTGCGGATCATCGACAAAGCAATCGACTGGTCCTTCATTTATGAACTGGTAGAAGATAAATACAGTCAGGACAACGGACGCCCCA
GTATGGACCCCGTCATGCTGATCAAGATTCCTTTCATCCAATATCTTTATGGCATTAAAAGCATGCGCCAGACGGTAAAAGAGATTGAGGTAAATGTCGC
CTATCGCTGGTTCCTCGGGTTGGATATGCTGGATAAAGTGCCACATTTTTCAACCTTTGGAAAGAACTATACGAGACGCTTTAAAGACACCGACCTGTTT
GAACAGATATTCGCGCATATCCTTTCTGAATGCTACAAATTTAAGCTGGTAGACCCTAATGAAGTTTTTGTGGATGCCACCCATGTAAAAGCCAGAGCAA
ACAATAAAAAGATGCAGAAGCGTATTGCTCATGATGAGGCATTATTTTTTGAAGATCTGCTGAAACAGGAAATCAATGAAGACCGTGAAGCACACGGGAA
ACGTCCGCTGAAAGAAAAAGAGGATGACAACAATACACCATCCGGTGGAGCCGGCGGCAAAGAAGAAAAGACAGTGAAAGCAAGCACTTCTGATCCGGAA
AGCGGATGGTTTCGCAAAGGAGAACATAAACATGTATTTGCTTATGCAGTACAGACCGCATGTGATAAGAATGGATGGATTCTCAGCTATAGCGTTCATC
CCGGGAACAATCATGACAGCAGAACCTTCAAGTCTTTATATGACAAGATAAAAGGGATCGGAATAGAGACCCTGATAGCCGATGCAGGATATAAAACTCC
CGGTATAGCAAAACTTTTGATCGATCAAGGAGTCAAACCGCTCCTACCATACAAACGCCCCCTGACAAAAGAGGGTTTCTTCAAGAAATACGAGTACGTT
TATGATGAGTATTACGACTGCTATATCTGTCCCAACAATCAGGTGCTGACCTATCGAACAACCAACCGTGAGGGATATCGCGAGTACAAAAGCTGTGGAA
GTGCCTGTGCAAGCTGTGCCTATCTTGCAAAATGTACCCAAAGCAAAGATCATGTAAAGACGGTTATGCGCCACATATGGGAACCTTACATGGAGATGTG
TGAGGAGATCCGCCAAACCCTGCGTATGAAAGAATTATATTCACAAAGGAAAGAAACCATAGAACGAATCTTTGGAAGTGCAAAGGAGAATCATGGTTTT
CGATATACACAGATGTTTGGAAAAGCCCGAATGGAAATGAAAGTCGGGCTTACATTTGCCTGCATGAATCTGAAAAAGCTGGCCAGGATGAAAGCGAAAT
GGGGAGCAGCCCATTTCACAAACTTTATTTTGAACGCAATTTGGTTAATAAAAGAAAACTGGCTTTGGGATACAAAGCCCAAAACCAGTTTGTCTACAGT
CTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1476 bp491 aa1291604+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLMMTQNADKKREQIQLFCMDDMVPQDHLLRIIDKAIDWSFIYELVEDKYSQDNGRPSMDPVMLIKIPFIQYLYGIKSMRQTVKEIEVNVAYRWFLGLDM
LDKVPHFSTFGKNYTRRFKDTDLFEQIFAHILSECYKFKLVDPNEVFVDATHVKARANNKKMQKRIAHDEALFFEDLLKQEINEDREAHGKRPLKEKEDD
NNTPSGGAGGKEEKTVKASTSDPESGWFRKGEHKHVFAYAVQTACDKNGWILSYSVHPGNNHDSRTFKSLYDKIKGIGIETLIADAGYKTPGIAKLLIDQ
GVKPLLPYKRPLTKEGFFKKYEYVYDEYYDCYICPNNQVLTYRTTNREGYREYKSCGSACASCAYLAKCTQSKDHVKTVMRHIWEPYMEMCEEIRQTLRM
KELYSQRKETIERIFGSAKENHGFRYTQMFGKARMEMKVGLTFACMNLKKLARMKAKWGAAHFTNFILNAIWLIKENWLWDTKPKTSLSTV

 

Blast result :
Comments
ISClbo1 is 83% aa similar to ISClsp3.
References
1] Isfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.