ISClbo1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABCC02000040 | ND | Clostridium bolteae | Clostridium bolteae ATCC BAA-613 |
DNA section
IS Length : 1603 bp
Ends
IR Length : 15
IRL : CAGACTGTAGACAAATTCCGAGGACAAGTGCCTCGGAATTTCTTCGCGAT
IRR : CAGACTGTAGACAAACTGGTTTTGGGCTTTGTATCCCAAAGCCAGTTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCATTTTGAA | AGAAGGCGGCATGAAGCCGCCTTCC | TGGTTTCATC | 25 |
DNA sequence
CAGACTGTAGACAAATTCCGAGGACAAGTGCCTCGGAATTTCTTCGCGATTGAGCCAGAAAAGTCAGCACTTACAAGACTTTGAGGCTCTTTTTTGGTAT
AATAGATGTATCAAATACAGGCGGTGAGATGCTTATGATGACACAGAATGCGGATAAAAAAAGAGAACAGATTCAGTTGTTTTGCATGGATGACATGGTT
CCACAGGACCATCTGCTGCGGATCATCGACAAAGCAATCGACTGGTCCTTCATTTATGAACTGGTAGAAGATAAATACAGTCAGGACAACGGACGCCCCA
GTATGGACCCCGTCATGCTGATCAAGATTCCTTTCATCCAATATCTTTATGGCATTAAAAGCATGCGCCAGACGGTAAAAGAGATTGAGGTAAATGTCGC
CTATCGCTGGTTCCTCGGGTTGGATATGCTGGATAAAGTGCCACATTTTTCAACCTTTGGAAAGAACTATACGAGACGCTTTAAAGACACCGACCTGTTT
GAACAGATATTCGCGCATATCCTTTCTGAATGCTACAAATTTAAGCTGGTAGACCCTAATGAAGTTTTTGTGGATGCCACCCATGTAAAAGCCAGAGCAA
ACAATAAAAAGATGCAGAAGCGTATTGCTCATGATGAGGCATTATTTTTTGAAGATCTGCTGAAACAGGAAATCAATGAAGACCGTGAAGCACACGGGAA
ACGTCCGCTGAAAGAAAAAGAGGATGACAACAATACACCATCCGGTGGAGCCGGCGGCAAAGAAGAAAAGACAGTGAAAGCAAGCACTTCTGATCCGGAA
AGCGGATGGTTTCGCAAAGGAGAACATAAACATGTATTTGCTTATGCAGTACAGACCGCATGTGATAAGAATGGATGGATTCTCAGCTATAGCGTTCATC
CCGGGAACAATCATGACAGCAGAACCTTCAAGTCTTTATATGACAAGATAAAAGGGATCGGAATAGAGACCCTGATAGCCGATGCAGGATATAAAACTCC
CGGTATAGCAAAACTTTTGATCGATCAAGGAGTCAAACCGCTCCTACCATACAAACGCCCCCTGACAAAAGAGGGTTTCTTCAAGAAATACGAGTACGTT
TATGATGAGTATTACGACTGCTATATCTGTCCCAACAATCAGGTGCTGACCTATCGAACAACCAACCGTGAGGGATATCGCGAGTACAAAAGCTGTGGAA
GTGCCTGTGCAAGCTGTGCCTATCTTGCAAAATGTACCCAAAGCAAAGATCATGTAAAGACGGTTATGCGCCACATATGGGAACCTTACATGGAGATGTG
TGAGGAGATCCGCCAAACCCTGCGTATGAAAGAATTATATTCACAAAGGAAAGAAACCATAGAACGAATCTTTGGAAGTGCAAAGGAGAATCATGGTTTT
CGATATACACAGATGTTTGGAAAAGCCCGAATGGAAATGAAAGTCGGGCTTACATTTGCCTGCATGAATCTGAAAAAGCTGGCCAGGATGAAAGCGAAAT
GGGGAGCAGCCCATTTCACAAACTTTATTTTGAACGCAATTTGGTTAATAAAAGAAAACTGGCTTTGGGATACAAAGCCCAAAACCAGTTTGTCTACAGT
CTG
AATAGATGTATCAAATACAGGCGGTGAGATGCTTATGATGACACAGAATGCGGATAAAAAAAGAGAACAGATTCAGTTGTTTTGCATGGATGACATGGTT
CCACAGGACCATCTGCTGCGGATCATCGACAAAGCAATCGACTGGTCCTTCATTTATGAACTGGTAGAAGATAAATACAGTCAGGACAACGGACGCCCCA
GTATGGACCCCGTCATGCTGATCAAGATTCCTTTCATCCAATATCTTTATGGCATTAAAAGCATGCGCCAGACGGTAAAAGAGATTGAGGTAAATGTCGC
CTATCGCTGGTTCCTCGGGTTGGATATGCTGGATAAAGTGCCACATTTTTCAACCTTTGGAAAGAACTATACGAGACGCTTTAAAGACACCGACCTGTTT
GAACAGATATTCGCGCATATCCTTTCTGAATGCTACAAATTTAAGCTGGTAGACCCTAATGAAGTTTTTGTGGATGCCACCCATGTAAAAGCCAGAGCAA
ACAATAAAAAGATGCAGAAGCGTATTGCTCATGATGAGGCATTATTTTTTGAAGATCTGCTGAAACAGGAAATCAATGAAGACCGTGAAGCACACGGGAA
ACGTCCGCTGAAAGAAAAAGAGGATGACAACAATACACCATCCGGTGGAGCCGGCGGCAAAGAAGAAAAGACAGTGAAAGCAAGCACTTCTGATCCGGAA
AGCGGATGGTTTCGCAAAGGAGAACATAAACATGTATTTGCTTATGCAGTACAGACCGCATGTGATAAGAATGGATGGATTCTCAGCTATAGCGTTCATC
CCGGGAACAATCATGACAGCAGAACCTTCAAGTCTTTATATGACAAGATAAAAGGGATCGGAATAGAGACCCTGATAGCCGATGCAGGATATAAAACTCC
CGGTATAGCAAAACTTTTGATCGATCAAGGAGTCAAACCGCTCCTACCATACAAACGCCCCCTGACAAAAGAGGGTTTCTTCAAGAAATACGAGTACGTT
TATGATGAGTATTACGACTGCTATATCTGTCCCAACAATCAGGTGCTGACCTATCGAACAACCAACCGTGAGGGATATCGCGAGTACAAAAGCTGTGGAA
GTGCCTGTGCAAGCTGTGCCTATCTTGCAAAATGTACCCAAAGCAAAGATCATGTAAAGACGGTTATGCGCCACATATGGGAACCTTACATGGAGATGTG
TGAGGAGATCCGCCAAACCCTGCGTATGAAAGAATTATATTCACAAAGGAAAGAAACCATAGAACGAATCTTTGGAAGTGCAAAGGAGAATCATGGTTTT
CGATATACACAGATGTTTGGAAAAGCCCGAATGGAAATGAAAGTCGGGCTTACATTTGCCTGCATGAATCTGAAAAAGCTGGCCAGGATGAAAGCGAAAT
GGGGAGCAGCCCATTTCACAAACTTTATTTTGAACGCAATTTGGTTAATAAAAGAAAACTGGCTTTGGGATACAAAGCCCAAAACCAGTTTGTCTACAGT
CTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1476 bp | 491 aa | 129 | 1604 | + | No |
Chemistry : DDE
ORF sequence :
MLMMTQNADKKREQIQLFCMDDMVPQDHLLRIIDKAIDWSFIYELVEDKYSQDNGRPSMDPVMLIKIPFIQYLYGIKSMRQTVKEIEVNVAYRWFLGLDM
LDKVPHFSTFGKNYTRRFKDTDLFEQIFAHILSECYKFKLVDPNEVFVDATHVKARANNKKMQKRIAHDEALFFEDLLKQEINEDREAHGKRPLKEKEDD
NNTPSGGAGGKEEKTVKASTSDPESGWFRKGEHKHVFAYAVQTACDKNGWILSYSVHPGNNHDSRTFKSLYDKIKGIGIETLIADAGYKTPGIAKLLIDQ
GVKPLLPYKRPLTKEGFFKKYEYVYDEYYDCYICPNNQVLTYRTTNREGYREYKSCGSACASCAYLAKCTQSKDHVKTVMRHIWEPYMEMCEEIRQTLRM
KELYSQRKETIERIFGSAKENHGFRYTQMFGKARMEMKVGLTFACMNLKKLARMKAKWGAAHFTNFILNAIWLIKENWLWDTKPKTSLSTV
LDKVPHFSTFGKNYTRRFKDTDLFEQIFAHILSECYKFKLVDPNEVFVDATHVKARANNKKMQKRIAHDEALFFEDLLKQEINEDREAHGKRPLKEKEDD
NNTPSGGAGGKEEKTVKASTSDPESGWFRKGEHKHVFAYAVQTACDKNGWILSYSVHPGNNHDSRTFKSLYDKIKGIGIETLIADAGYKTPGIAKLLIDQ
GVKPLLPYKRPLTKEGFFKKYEYVYDEYYDCYICPNNQVLTYRTTNREGYREYKSCGSACASCAYLAKCTQSKDHVKTVMRHIWEPYMEMCEEIRQTLRM
KELYSQRKETIERIFGSAKENHGFRYTQMFGKARMEMKVGLTFACMNLKKLARMKAKWGAAHFTNFILNAIWLIKENWLWDTKPKTSLSTV
Blast result :
Comments
ISClbo1 is 83% aa similar to ISClsp3.
References
1] Isfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.