ISClsp3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABGC03000023 ND Clostridium sp.
Clostridium sp. SS2/1
DNA section
IS Length : 1604 bp

Ends


IR Length : 15

IRL : CAGACTGTAGACAAAGTCCCGGTATTTGCCGGGACTTTTACTATGAGCAC
IRR : CAGACTGTAGACAAACTAGGTGCTGGGATCATCCCAGCACCATTTTTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGATAATTAAAAATCACAGGTAATTCAATACCTGTGATTTTTGTGTATAA30

DNA sequence

CAGACTGTAGACAAAGTCCCGGTATTTGCCGGGACTTTTACTATGAGCACTGTCTTCTGGTATAATAGAATTATCAGAAAGGCGGTGTTTTTTATGATGA
CGAAAAATGCAGACAAGAAACGAGAACAGATGATGATGTTCTCAATGGATTCCATGGTTCCGCAGGATCATATGCTAAGATTGATTGATAAAGCAATCAA
CTGGAACTTTATTTACGATCTTGTAGAAGATAAATATTGTCAAAACAATGGTCGTCCAAGTATGGATCCTGTTATGCTCATTAAAATTCCATTTATTCAA
TATCTTTATGGAATCAAAAGTATGCGTCAGACGATCCGAGAGATTGAAGTAAATGTTGCCTACCGTTGGTTTCTTGGTCTGGATATGCTGGATCCTGTAC
CGCATTTTTCAACGTTTGGAAAGAACTATTCCCGCCGATTTAAAGACACGGATCTTTTTGAACAGATATTTTCAAAGATTCTGGAAGAATGTATGAAGTA
TAAGTTGATCAATACGGACGAGATCTTTGTTGATGCAACTCATGTAAAAGCATGTGCCAACAGTAAAAAAATGCGAAAAAGAGTTGCTCATGAACAGGCA
CTCTGGTATGAAGATGAATTACAAAAAGAGATCAATGAAGACCGACAGGCACATGGGAAAAAACCTCTAAAAGATAAAAATAAGAAGAATCCGCCAACAC
CTCCCACATCTGGGAATGATCAACATAATGAGCTTGAAGAGATACCAGACGATATAAAAACCAAAAAGAGCAGTATTACAGATCCAGAAAGCGGATGGTT
TCGCAAAGGAGAACATAAACATGTTTTTGCATATGCAGTAGAAACGGCATGTGATGAACACGGATGGGTCCTTGGATATAGTGTTCATCCTGGAAATGAA
CATGACAGCCGAACATTTCAAACAATCTATGAAAAGGTGAAAAGTTTTGAACCAGAAATGATCGTGGCAGATGCAGGATACAAGACACCAGCGATTGCCA
GACAACTTCTGAAAGATAGGATTGAACCATTGTTTCCATATAAACGTCCTATGACAAAAGAGGGATTTTTTAAGAAATATGAATATGTTTATGATGAATA
CTATGATTGTTACATCTGTCCAGAAAATCAGATTCTAAGATACAGTACAACAAACAGGGATGGATACAGAGAATATAAAAGCTGTGGATATCAATGTGAA
AAATGTCCACAGATATCCAAATGTACAGAAAGCAAGAATCATGTAAAAGTGATAACACGTCATGTTTGGGAAAAATATATAGAAAAAGCAGAAGATATCC
GACATGTAAGAGGGAATAAAGCAATCTATCAGAAACGAAAAGAAACGATAGAAAGAATCTTTGGAACAGCAAAAGAATACCATGGATTTCGATATACACA
ATACATAGGAAAAGCACGGATGGAAATGAAAGCCGGGCTTACTTTTGCATGTATGAATCTAAAAAAACTGGCAAGATTTCTTGGTAAGAACGGATTGCTA
AATGGACAAAAGCGAAGATTTCTAAGAAATTTTTGGATACAATTTAACTTTAAAGGAAAAAATGGTGCTGGGATGATCCCAGCACCTAGTTTGTCTACAG
TCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1563 bp520 aa431605+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTVFWYNRIIRKAVFFMMTKNADKKREQMMMFSMDSMVPQDHMLRLIDKAINWNFIYDLVEDKYCQNNGRPSMDPVMLIKIPFIQYLYGIKSMRQTIRE
IEVNVAYRWFLGLDMLDPVPHFSTFGKNYSRRFKDTDLFEQIFSKILEECMKYKLINTDEIFVDATHVKACANSKKMRKRVAHEQALWYEDELQKEINED
RQAHGKKPLKDKNKKNPPTPPTSGNDQHNELEEIPDDIKTKKSSITDPESGWFRKGEHKHVFAYAVETACDEHGWVLGYSVHPGNEHDSRTFQTIYEKVK
SFEPEMIVADAGYKTPAIARQLLKDRIEPLFPYKRPMTKEGFFKKYEYVYDEYYDCYICPENQILRYSTTNRDGYREYKSCGYQCEKCPQISKCTESKNH
VKVITRHVWEKYIEKAEDIRHVRGNKAIYQKRKETIERIFGTAKEYHGFRYTQYIGKARMEMKAGLTFACMNLKKLARFLGKNGLLNGQKRRFLRNFWIQ
FNFKGKNGAGMIPAPSLSTV

 

Blast result :
Comments
ISClsp3 is 71% aa similar to ISSag8. The last nucleotide of the transposase STOP codon is in the direct repeat.
References
1] ISfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.