ISClsp3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABGC03000023 | ND | Clostridium sp. | Clostridium sp. SS2/1 |
DNA section
IS Length : 1604 bp
Ends
IR Length : 15
IRL : CAGACTGTAGACAAAGTCCCGGTATTTGCCGGGACTTTTACTATGAGCAC
IRR : CAGACTGTAGACAAACTAGGTGCTGGGATCATCCCAGCACCATTTTTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGATAATTAA | AAATCACAGGTAATTCAATACCTGTGATTT | TTGTGTATAA | 30 |
DNA sequence
CAGACTGTAGACAAAGTCCCGGTATTTGCCGGGACTTTTACTATGAGCACTGTCTTCTGGTATAATAGAATTATCAGAAAGGCGGTGTTTTTTATGATGA
CGAAAAATGCAGACAAGAAACGAGAACAGATGATGATGTTCTCAATGGATTCCATGGTTCCGCAGGATCATATGCTAAGATTGATTGATAAAGCAATCAA
CTGGAACTTTATTTACGATCTTGTAGAAGATAAATATTGTCAAAACAATGGTCGTCCAAGTATGGATCCTGTTATGCTCATTAAAATTCCATTTATTCAA
TATCTTTATGGAATCAAAAGTATGCGTCAGACGATCCGAGAGATTGAAGTAAATGTTGCCTACCGTTGGTTTCTTGGTCTGGATATGCTGGATCCTGTAC
CGCATTTTTCAACGTTTGGAAAGAACTATTCCCGCCGATTTAAAGACACGGATCTTTTTGAACAGATATTTTCAAAGATTCTGGAAGAATGTATGAAGTA
TAAGTTGATCAATACGGACGAGATCTTTGTTGATGCAACTCATGTAAAAGCATGTGCCAACAGTAAAAAAATGCGAAAAAGAGTTGCTCATGAACAGGCA
CTCTGGTATGAAGATGAATTACAAAAAGAGATCAATGAAGACCGACAGGCACATGGGAAAAAACCTCTAAAAGATAAAAATAAGAAGAATCCGCCAACAC
CTCCCACATCTGGGAATGATCAACATAATGAGCTTGAAGAGATACCAGACGATATAAAAACCAAAAAGAGCAGTATTACAGATCCAGAAAGCGGATGGTT
TCGCAAAGGAGAACATAAACATGTTTTTGCATATGCAGTAGAAACGGCATGTGATGAACACGGATGGGTCCTTGGATATAGTGTTCATCCTGGAAATGAA
CATGACAGCCGAACATTTCAAACAATCTATGAAAAGGTGAAAAGTTTTGAACCAGAAATGATCGTGGCAGATGCAGGATACAAGACACCAGCGATTGCCA
GACAACTTCTGAAAGATAGGATTGAACCATTGTTTCCATATAAACGTCCTATGACAAAAGAGGGATTTTTTAAGAAATATGAATATGTTTATGATGAATA
CTATGATTGTTACATCTGTCCAGAAAATCAGATTCTAAGATACAGTACAACAAACAGGGATGGATACAGAGAATATAAAAGCTGTGGATATCAATGTGAA
AAATGTCCACAGATATCCAAATGTACAGAAAGCAAGAATCATGTAAAAGTGATAACACGTCATGTTTGGGAAAAATATATAGAAAAAGCAGAAGATATCC
GACATGTAAGAGGGAATAAAGCAATCTATCAGAAACGAAAAGAAACGATAGAAAGAATCTTTGGAACAGCAAAAGAATACCATGGATTTCGATATACACA
ATACATAGGAAAAGCACGGATGGAAATGAAAGCCGGGCTTACTTTTGCATGTATGAATCTAAAAAAACTGGCAAGATTTCTTGGTAAGAACGGATTGCTA
AATGGACAAAAGCGAAGATTTCTAAGAAATTTTTGGATACAATTTAACTTTAAAGGAAAAAATGGTGCTGGGATGATCCCAGCACCTAGTTTGTCTACAG
TCTG
CGAAAAATGCAGACAAGAAACGAGAACAGATGATGATGTTCTCAATGGATTCCATGGTTCCGCAGGATCATATGCTAAGATTGATTGATAAAGCAATCAA
CTGGAACTTTATTTACGATCTTGTAGAAGATAAATATTGTCAAAACAATGGTCGTCCAAGTATGGATCCTGTTATGCTCATTAAAATTCCATTTATTCAA
TATCTTTATGGAATCAAAAGTATGCGTCAGACGATCCGAGAGATTGAAGTAAATGTTGCCTACCGTTGGTTTCTTGGTCTGGATATGCTGGATCCTGTAC
CGCATTTTTCAACGTTTGGAAAGAACTATTCCCGCCGATTTAAAGACACGGATCTTTTTGAACAGATATTTTCAAAGATTCTGGAAGAATGTATGAAGTA
TAAGTTGATCAATACGGACGAGATCTTTGTTGATGCAACTCATGTAAAAGCATGTGCCAACAGTAAAAAAATGCGAAAAAGAGTTGCTCATGAACAGGCA
CTCTGGTATGAAGATGAATTACAAAAAGAGATCAATGAAGACCGACAGGCACATGGGAAAAAACCTCTAAAAGATAAAAATAAGAAGAATCCGCCAACAC
CTCCCACATCTGGGAATGATCAACATAATGAGCTTGAAGAGATACCAGACGATATAAAAACCAAAAAGAGCAGTATTACAGATCCAGAAAGCGGATGGTT
TCGCAAAGGAGAACATAAACATGTTTTTGCATATGCAGTAGAAACGGCATGTGATGAACACGGATGGGTCCTTGGATATAGTGTTCATCCTGGAAATGAA
CATGACAGCCGAACATTTCAAACAATCTATGAAAAGGTGAAAAGTTTTGAACCAGAAATGATCGTGGCAGATGCAGGATACAAGACACCAGCGATTGCCA
GACAACTTCTGAAAGATAGGATTGAACCATTGTTTCCATATAAACGTCCTATGACAAAAGAGGGATTTTTTAAGAAATATGAATATGTTTATGATGAATA
CTATGATTGTTACATCTGTCCAGAAAATCAGATTCTAAGATACAGTACAACAAACAGGGATGGATACAGAGAATATAAAAGCTGTGGATATCAATGTGAA
AAATGTCCACAGATATCCAAATGTACAGAAAGCAAGAATCATGTAAAAGTGATAACACGTCATGTTTGGGAAAAATATATAGAAAAAGCAGAAGATATCC
GACATGTAAGAGGGAATAAAGCAATCTATCAGAAACGAAAAGAAACGATAGAAAGAATCTTTGGAACAGCAAAAGAATACCATGGATTTCGATATACACA
ATACATAGGAAAAGCACGGATGGAAATGAAAGCCGGGCTTACTTTTGCATGTATGAATCTAAAAAAACTGGCAAGATTTCTTGGTAAGAACGGATTGCTA
AATGGACAAAAGCGAAGATTTCTAAGAAATTTTTGGATACAATTTAACTTTAAAGGAAAAAATGGTGCTGGGATGATCCCAGCACCTAGTTTGTCTACAG
TCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1563 bp | 520 aa | 43 | 1605 | + | No |
Chemistry : DDE
ORF sequence :
MSTVFWYNRIIRKAVFFMMTKNADKKREQMMMFSMDSMVPQDHMLRLIDKAINWNFIYDLVEDKYCQNNGRPSMDPVMLIKIPFIQYLYGIKSMRQTIRE
IEVNVAYRWFLGLDMLDPVPHFSTFGKNYSRRFKDTDLFEQIFSKILEECMKYKLINTDEIFVDATHVKACANSKKMRKRVAHEQALWYEDELQKEINED
RQAHGKKPLKDKNKKNPPTPPTSGNDQHNELEEIPDDIKTKKSSITDPESGWFRKGEHKHVFAYAVETACDEHGWVLGYSVHPGNEHDSRTFQTIYEKVK
SFEPEMIVADAGYKTPAIARQLLKDRIEPLFPYKRPMTKEGFFKKYEYVYDEYYDCYICPENQILRYSTTNRDGYREYKSCGYQCEKCPQISKCTESKNH
VKVITRHVWEKYIEKAEDIRHVRGNKAIYQKRKETIERIFGTAKEYHGFRYTQYIGKARMEMKAGLTFACMNLKKLARFLGKNGLLNGQKRRFLRNFWIQ
FNFKGKNGAGMIPAPSLSTV
IEVNVAYRWFLGLDMLDPVPHFSTFGKNYSRRFKDTDLFEQIFSKILEECMKYKLINTDEIFVDATHVKACANSKKMRKRVAHEQALWYEDELQKEINED
RQAHGKKPLKDKNKKNPPTPPTSGNDQHNELEEIPDDIKTKKSSITDPESGWFRKGEHKHVFAYAVETACDEHGWVLGYSVHPGNEHDSRTFQTIYEKVK
SFEPEMIVADAGYKTPAIARQLLKDRIEPLFPYKRPMTKEGFFKKYEYVYDEYYDCYICPENQILRYSTTNRDGYREYKSCGYQCEKCPQISKCTESKNH
VKVITRHVWEKYIEKAEDIRHVRGNKAIYQKRKETIERIFGTAKEYHGFRYTQYIGKARMEMKAGLTFACMNLKKLARFLGKNGLLNGQKRRFLRNFWIQ
FNFKGKNGAGMIPAPSLSTV
Blast result :
Comments
ISClsp3 is 71% aa similar to ISSag8. The last nucleotide of the transposase STOP codon is in the direct repeat.
References
1] ISfinder annotation (2010)
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.
2] Sudarsanam,P., Ley,R., Guruge,J., Turnbaugh,P.J., Mahowald,M., Liep,D. and Gordon,J. (2007) Direct submission GenBank.