ISRce2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011420 | ND | Rhodospirillum centenum | Rhodospirillum centenum SW |
DNA section
IS Length : 1528 bp
Ends
IR Length : 13/15
IRL : CAGACTGCTGACAAAGGCCTGGCGTGAGCCGGGCCTTTGTGATTCGATTG
IRR : CAGACCGATGACAAACCCCGTCGTTTTCGGCGGGGTTTTCATTTTTGGGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCAACGCAAA | AGGCCACCCCGAGGGGTGGCCT | TCCACGTCGA | 22 |
DNA sequence
CAGACTGCTGACAAAGGCCTGGCGTGAGCCGGGCCTTTGTGATTCGATTGGTCATGCTGAGGAAACCGACGGCGCAGCAGACTGAAATCGAGATGGTGAC
GCTCGACGGTCTGGTTCCGCCCGATCACCTGCTTCGCAAGATCGACGCGGTGATCGACTTCTCCTTCATCCATGATCGCGTGTCCGGGCTTTACTGTCCG
GACAACGGCCGTCCGGCCCTTGATCCGGTTGTCATGTTCAAGGCGCTGTTCATCGGCTACCTGTTCGGCATCCGCTCCGAACGCCAGCTGGTGCGCGAGA
TCCAGGTGAACGTGGCGTATCGCTGGTTTCTGGGTCTGCGCCTGACCGATCCGGTGTTCGACGCCTCGACGCTGAGCCAGAACCGGCGCCGGCGTTACCG
GGACACCTCCGTGGCGCAGGACATCTTCGACCATGTGGTGGAGCAGGCGATCGGCCACGGGCTGGTGGACGGCACCGTGCTCTACACCGACAGCACCCAC
CTCAAGGCCAACGCCAACAAGAACCGCTACGACAAGGCGGTGGTCGCCAAGTCGCGGGCGGATTACTGGGACGATCTGGACCGGGCGGTGGAGGCGGACC
GCGCCACCCACGGCAAGAAGCCCCTCAAGCCCAAGGACCGGCAGCCGCCCGAGAAGGAGACCAAGATCAGCCGCACCGATCCGGAGAGCGGCTACATGGT
GCGCGATGGCAAGCCCACCGGCTTCTTCTACCTTGATCACCGCACCGTGGATGGGCGCCATGGCATCATCACCGACAGCTTCGCCACCCCCGCCAACGTG
CACGACAGCATCGTCTATCTCGGCCGGCTCGACCGCCAGCGCGCCCGCTTCGCGCTCGACGTCAAGGCCGTCGGGCTGGACGCCGGCTATGCCACGGCCG
GGATCGCAAAGGGGCTGGAGGACCGCGCCATCCTCGGCGTCACCGGCTACAACCGACCGACACCCCCGGCCCCGGGGATGATGCCCAAGAGCGCCTTCAC
CTACGAGCCCGGGACCGACACCTGGTCATGCCCCGGCGGACAGGCCCTCGCCTACGCCACCACCGACCGCAACGGCTACCGCCACTACAGGAGCGATCCG
GCCCTCTGCTTCGCCTGCCCGCTGCTCGCGTCGTGCACCCGCAACCCCAAGGCCGTCCGCACCATCACCCGCCACCTCTGGGCCGACATCCGCGAGCGCA
CCGACGCCCACCGCAAGACCCCCTGGGGCAAGGCCATCTACAAGCGACGAAAAGAGACGGTCGAACGCTCCTTTGCCGACGCCAAACAGCTCTTCGGGCA
CCGCTACGCACGCTTCCGCGGCCTCCTCGGCGTCACCTGGCAGTGCCTGCTCGCCGCCGCCGCCCAGAACATCAAGAAAATCGCCCTCGCAATCGCCCCG
AAGGCAGCCCTCCGGCCAGCCTGAGACAGAAACCTCCCTGTCTGCCCGATCCACCCAACCAGTTTCGACAGCCGCAATCCCCAAAAATGAAAACCCCGCC
GAAAACGACGGGGTTTGTCATCGGTCTG
GCTCGACGGTCTGGTTCCGCCCGATCACCTGCTTCGCAAGATCGACGCGGTGATCGACTTCTCCTTCATCCATGATCGCGTGTCCGGGCTTTACTGTCCG
GACAACGGCCGTCCGGCCCTTGATCCGGTTGTCATGTTCAAGGCGCTGTTCATCGGCTACCTGTTCGGCATCCGCTCCGAACGCCAGCTGGTGCGCGAGA
TCCAGGTGAACGTGGCGTATCGCTGGTTTCTGGGTCTGCGCCTGACCGATCCGGTGTTCGACGCCTCGACGCTGAGCCAGAACCGGCGCCGGCGTTACCG
GGACACCTCCGTGGCGCAGGACATCTTCGACCATGTGGTGGAGCAGGCGATCGGCCACGGGCTGGTGGACGGCACCGTGCTCTACACCGACAGCACCCAC
CTCAAGGCCAACGCCAACAAGAACCGCTACGACAAGGCGGTGGTCGCCAAGTCGCGGGCGGATTACTGGGACGATCTGGACCGGGCGGTGGAGGCGGACC
GCGCCACCCACGGCAAGAAGCCCCTCAAGCCCAAGGACCGGCAGCCGCCCGAGAAGGAGACCAAGATCAGCCGCACCGATCCGGAGAGCGGCTACATGGT
GCGCGATGGCAAGCCCACCGGCTTCTTCTACCTTGATCACCGCACCGTGGATGGGCGCCATGGCATCATCACCGACAGCTTCGCCACCCCCGCCAACGTG
CACGACAGCATCGTCTATCTCGGCCGGCTCGACCGCCAGCGCGCCCGCTTCGCGCTCGACGTCAAGGCCGTCGGGCTGGACGCCGGCTATGCCACGGCCG
GGATCGCAAAGGGGCTGGAGGACCGCGCCATCCTCGGCGTCACCGGCTACAACCGACCGACACCCCCGGCCCCGGGGATGATGCCCAAGAGCGCCTTCAC
CTACGAGCCCGGGACCGACACCTGGTCATGCCCCGGCGGACAGGCCCTCGCCTACGCCACCACCGACCGCAACGGCTACCGCCACTACAGGAGCGATCCG
GCCCTCTGCTTCGCCTGCCCGCTGCTCGCGTCGTGCACCCGCAACCCCAAGGCCGTCCGCACCATCACCCGCCACCTCTGGGCCGACATCCGCGAGCGCA
CCGACGCCCACCGCAAGACCCCCTGGGGCAAGGCCATCTACAAGCGACGAAAAGAGACGGTCGAACGCTCCTTTGCCGACGCCAAACAGCTCTTCGGGCA
CCGCTACGCACGCTTCCGCGGCCTCCTCGGCGTCACCTGGCAGTGCCTGCTCGCCGCCGCCGCCCAGAACATCAAGAAAATCGCCCTCGCAATCGCCCCG
AAGGCAGCCCTCCGGCCAGCCTGAGACAGAAACCTCCCTGTCTGCCCGATCCACCCAACCAGTTTCGACAGCCGCAATCCCCAAAAATGAAAACCCCGCC
GAAAACGACGGGGTTTGTCATCGGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 456 aa | 54 | 1424 | + | No |
Chemistry : DDE
ORF sequence :
MLRKPTAQQTEIEMVTLDGLVPPDHLLRKIDAVIDFSFIHDRVSGLYCPDNGRPALDPVVMFKALFIGYLFGIRSERQLVREIQVNVAYRWFLGLRLTDP
VFDASTLSQNRRRRYRDTSVAQDIFDHVVEQAIGHGLVDGTVLYTDSTHLKANANKNRYDKAVVAKSRADYWDDLDRAVEADRATHGKKPLKPKDRQPPE
KETKISRTDPESGYMVRDGKPTGFFYLDHRTVDGRHGIITDSFATPANVHDSIVYLGRLDRQRARFALDVKAVGLDAGYATAGIAKGLEDRAILGVTGYN
RPTPPAPGMMPKSAFTYEPGTDTWSCPGGQALAYATTDRNGYRHYRSDPALCFACPLLASCTRNPKAVRTITRHLWADIRERTDAHRKTPWGKAIYKRRK
ETVERSFADAKQLFGHRYARFRGLLGVTWQCLLAAAAQNIKKIALAIAPKAALRPA
VFDASTLSQNRRRRYRDTSVAQDIFDHVVEQAIGHGLVDGTVLYTDSTHLKANANKNRYDKAVVAKSRADYWDDLDRAVEADRATHGKKPLKPKDRQPPE
KETKISRTDPESGYMVRDGKPTGFFYLDHRTVDGRHGIITDSFATPANVHDSIVYLGRLDRQRARFALDVKAVGLDAGYATAGIAKGLEDRAILGVTGYN
RPTPPAPGMMPKSAFTYEPGTDTWSCPGGQALAYATTDRNGYRHYRSDPALCFACPLLASCTRNPKAVRTITRHLWADIRERTDAHRKTPWGKAIYKRRK
ETVERSFADAKQLFGHRYARFRGLLGVTWQCLLAAAAQNIKKIALAIAPKAALRPA
Blast result :
Comments
ISRce2 is 86% aa similar to ISRle11.
References
1] Isfinder annotation (2010)
2] Touchman,J.W., Bauer,C. and Blankenship,R.E. (2010) Direct submission GenBank.
2] Touchman,J.W., Bauer,C. and Blankenship,R.E. (2010) Direct submission GenBank.