ISRce2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011420 ND Rhodospirillum centenum
Rhodospirillum centenum SW
DNA section
IS Length : 1528 bp

Ends


IR Length : 13/15

IRL : CAGACTGCTGACAAAGGCCTGGCGTGAGCCGGGCCTTTGTGATTCGATTG
IRR : CAGACCGATGACAAACCCCGTCGTTTTCGGCGGGGTTTTCATTTTTGGGG

Insertion site


Left flankDirect repeatRight flankDR Length
CCAACGCAAAAGGCCACCCCGAGGGGTGGCCTTCCACGTCGA22

DNA sequence

CAGACTGCTGACAAAGGCCTGGCGTGAGCCGGGCCTTTGTGATTCGATTGGTCATGCTGAGGAAACCGACGGCGCAGCAGACTGAAATCGAGATGGTGAC
GCTCGACGGTCTGGTTCCGCCCGATCACCTGCTTCGCAAGATCGACGCGGTGATCGACTTCTCCTTCATCCATGATCGCGTGTCCGGGCTTTACTGTCCG
GACAACGGCCGTCCGGCCCTTGATCCGGTTGTCATGTTCAAGGCGCTGTTCATCGGCTACCTGTTCGGCATCCGCTCCGAACGCCAGCTGGTGCGCGAGA
TCCAGGTGAACGTGGCGTATCGCTGGTTTCTGGGTCTGCGCCTGACCGATCCGGTGTTCGACGCCTCGACGCTGAGCCAGAACCGGCGCCGGCGTTACCG
GGACACCTCCGTGGCGCAGGACATCTTCGACCATGTGGTGGAGCAGGCGATCGGCCACGGGCTGGTGGACGGCACCGTGCTCTACACCGACAGCACCCAC
CTCAAGGCCAACGCCAACAAGAACCGCTACGACAAGGCGGTGGTCGCCAAGTCGCGGGCGGATTACTGGGACGATCTGGACCGGGCGGTGGAGGCGGACC
GCGCCACCCACGGCAAGAAGCCCCTCAAGCCCAAGGACCGGCAGCCGCCCGAGAAGGAGACCAAGATCAGCCGCACCGATCCGGAGAGCGGCTACATGGT
GCGCGATGGCAAGCCCACCGGCTTCTTCTACCTTGATCACCGCACCGTGGATGGGCGCCATGGCATCATCACCGACAGCTTCGCCACCCCCGCCAACGTG
CACGACAGCATCGTCTATCTCGGCCGGCTCGACCGCCAGCGCGCCCGCTTCGCGCTCGACGTCAAGGCCGTCGGGCTGGACGCCGGCTATGCCACGGCCG
GGATCGCAAAGGGGCTGGAGGACCGCGCCATCCTCGGCGTCACCGGCTACAACCGACCGACACCCCCGGCCCCGGGGATGATGCCCAAGAGCGCCTTCAC
CTACGAGCCCGGGACCGACACCTGGTCATGCCCCGGCGGACAGGCCCTCGCCTACGCCACCACCGACCGCAACGGCTACCGCCACTACAGGAGCGATCCG
GCCCTCTGCTTCGCCTGCCCGCTGCTCGCGTCGTGCACCCGCAACCCCAAGGCCGTCCGCACCATCACCCGCCACCTCTGGGCCGACATCCGCGAGCGCA
CCGACGCCCACCGCAAGACCCCCTGGGGCAAGGCCATCTACAAGCGACGAAAAGAGACGGTCGAACGCTCCTTTGCCGACGCCAAACAGCTCTTCGGGCA
CCGCTACGCACGCTTCCGCGGCCTCCTCGGCGTCACCTGGCAGTGCCTGCTCGCCGCCGCCGCCCAGAACATCAAGAAAATCGCCCTCGCAATCGCCCCG
AAGGCAGCCCTCCGGCCAGCCTGAGACAGAAACCTCCCTGTCTGCCCGATCCACCCAACCAGTTTCGACAGCCGCAATCCCCAAAAATGAAAACCCCGCC
GAAAACGACGGGGTTTGTCATCGGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp456 aa541424+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLRKPTAQQTEIEMVTLDGLVPPDHLLRKIDAVIDFSFIHDRVSGLYCPDNGRPALDPVVMFKALFIGYLFGIRSERQLVREIQVNVAYRWFLGLRLTDP
VFDASTLSQNRRRRYRDTSVAQDIFDHVVEQAIGHGLVDGTVLYTDSTHLKANANKNRYDKAVVAKSRADYWDDLDRAVEADRATHGKKPLKPKDRQPPE
KETKISRTDPESGYMVRDGKPTGFFYLDHRTVDGRHGIITDSFATPANVHDSIVYLGRLDRQRARFALDVKAVGLDAGYATAGIAKGLEDRAILGVTGYN
RPTPPAPGMMPKSAFTYEPGTDTWSCPGGQALAYATTDRNGYRHYRSDPALCFACPLLASCTRNPKAVRTITRHLWADIRERTDAHRKTPWGKAIYKRRK
ETVERSFADAKQLFGHRYARFRGLLGVTWQCLLAAAAQNIKKIALAIAPKAALRPA

 

Blast result :
Comments
ISRce2 is 86% aa similar to ISRle11.
References
1] Isfinder annotation (2010)
2] Touchman,J.W., Bauer,C. and Blankenship,R.E. (2010) Direct submission GenBank.