ISRle11

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008380 ND Rhizobium leguminosarum
Rhizobium leguminosarum bv. viciae 3841
DNA section
IS Length : 1527 bp

Ends


IR Length : 17/18

IRL : CAGACTGCTGACAAACCCCTGGCACCGTCCAGGGGTTTGTGATTCATTGG
IRR : CAGACCGCTGACAAACCCGTCGATTTTTCGGCGGGTTTTGTTTTTGCGGA

Insertion site


Left flankDirect repeatRight flankDR Length
GATTTTGAAGAGACCGATGGAAAAACCATCGGTCTCTTCATCGCG25

DNA sequence

CAGACTGCTGACAAACCCCTGGCACCGTCCAGGGGTTTGTGATTCATTGGGACATGTTGAAGAAACCTGCCCCCGCCCAGACGGCTCTTGAGATGGTGAC
GCTCGACAGCCTGGTGCCAAAGGATCACTTGCTTCGCAAGATCGATGCGGTGATCGACTTTTCCTTCATCCATGGCCGGGTTGCGGGGCTTTATTGCGCC
GACAACGGCCGCCCGCCGCTTGATCCGACCTTGATGTTCAAGGCGCTGTTCCTTGGCTACCTGTTCGGCATCCGCTCGGAGCGTCAGCTGGTGCGCGAGA
TCGAGGTCAACGTCGCCTATCGCTGGTTTCTGCAGATGAAGCTGACGGATGGTGTGTTTGACGCCTCGACGCTGTCGCAGAACCGCCGCCGGCGCTTCAA
CGACACCTCGGTTGCACAGGACATCTTTGATCATATCGTTGAGCAGGCGATCCGTCATGGCCTGGTGGATGGCACGGTGCTTTATACGGATTCAACGCAT
CTGAAGGCGAATGCCAACAAGGGCAAATATGATCTTGCGATGATCGAAAAGTCGCGTTCCGATTACTGGGCCGACCTCGACCGAGCGATTGAGGCCGAGC
GGGCACTCCACGGCCAGAAGCCCTTGAAGGAAAAAGAGCGCGAGGCGGAGGTGAAGGAAACCAAGGTGTCGCGCACCGATCCCGACAGCGGCTACATGGT
GCGCGACGGCAAGCCGAAGGGCTTCTTCTACCTCGATCACCGCACGGTGGATGGCAAGCTGGCGATCATCACCGACACCCATGTCACGCCCGCCAATGTG
CATGACAGTATCGTCTATCTCCACCGGCTGGACCGGCAGCGTGAGCGGTTCGGCTTCGAGGTCGGTGCTGTCGGGCTGGATGCCGGCTATGCGACATCCG
GCATCGCCAAGGGTCTTGAAGACCGCACCATCCTCGGTGTCACCGGCTATCGTAATCCGACCCCGCCCAGAGCCGGCATGATGCGCAAGTCGAAATTCGG
CTATGAGCCCGAGACAGACGGTTACCGCTGCCCCGAAGGCCAACTGCTCGCCTATGCCACCACCGACCGCAACGGTTATCGCCACTATCGTTCGGATCCT
GCCATCTGCCGCGATTGTCCGTTGTTGGCCTCCTGCACCAATAACGCCACGGCGACACGTACCATCACCCGCCATGTCTGGGCCGATGCCCGCCAGCGCA
CCGATGCCAACCGCCTGACCCCTTGGGGCAAGGCAATCTACAAGCGGCGAAAGGAGACGGTCGAACGTTCCTTCGCCGATGCCAAGCAGCTTCACGGGCA
TCGCTATGCCCGCTTCCGAAGTCTCACCCGCGTCTCATGCCAGTGCCTGTTGGCTGCGGCCGCCCAAAACATCAAGAAGATCGCAATGGCGCTCACCAAA
GCGCCAAAACCAGCCATGGCGTGAGCCGATACATCCTTCTTCACCTCCGCCAAAACAATGCCGCCAAAAAAATCCAATCCGCAAAAACAAAACCCGCCGA
AAAATCGACGGGTTTGTCAGCGGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1371 bp456 aa541424+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLKKPAPAQTALEMVTLDSLVPKDHLLRKIDAVIDFSFIHGRVAGLYCADNGRPPLDPTLMFKALFLGYLFGIRSERQLVREIEVNVAYRWFLQMKLTDG
VFDASTLSQNRRRRFNDTSVAQDIFDHIVEQAIRHGLVDGTVLYTDSTHLKANANKGKYDLAMIEKSRSDYWADLDRAIEAERALHGQKPLKEKEREAEV
KETKVSRTDPDSGYMVRDGKPKGFFYLDHRTVDGKLAIITDTHVTPANVHDSIVYLHRLDRQRERFGFEVGAVGLDAGYATSGIAKGLEDRTILGVTGYR
NPTPPRAGMMRKSKFGYEPETDGYRCPEGQLLAYATTDRNGYRHYRSDPAICRDCPLLASCTNNATATRTITRHVWADARQRTDANRLTPWGKAIYKRRK
ETVERSFADAKQLHGHRYARFRSLTRVSCQCLLAAAAQNIKKIAMALTKAPKPAMA

 

Blast result :
Comments
ISRle11 is 77% aa similar to ISBma2.
References
1] ISfinder annotation (2010)
2] Young,J.P., Crossman,L.C., Johnston,A.W., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,I., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7 (4), R34