ISRle11
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008380 | ND | Rhizobium leguminosarum | Rhizobium leguminosarum bv. viciae 3841 |
DNA section
IS Length : 1527 bp
Ends
IR Length : 17/18
IRL : CAGACTGCTGACAAACCCCTGGCACCGTCCAGGGGTTTGTGATTCATTGG
IRR : CAGACCGCTGACAAACCCGTCGATTTTTCGGCGGGTTTTGTTTTTGCGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATTTTGAAG | AGACCGATGGAAAAACCATCGGTCT | CTTCATCGCG | 25 |
DNA sequence
CAGACTGCTGACAAACCCCTGGCACCGTCCAGGGGTTTGTGATTCATTGGGACATGTTGAAGAAACCTGCCCCCGCCCAGACGGCTCTTGAGATGGTGAC
GCTCGACAGCCTGGTGCCAAAGGATCACTTGCTTCGCAAGATCGATGCGGTGATCGACTTTTCCTTCATCCATGGCCGGGTTGCGGGGCTTTATTGCGCC
GACAACGGCCGCCCGCCGCTTGATCCGACCTTGATGTTCAAGGCGCTGTTCCTTGGCTACCTGTTCGGCATCCGCTCGGAGCGTCAGCTGGTGCGCGAGA
TCGAGGTCAACGTCGCCTATCGCTGGTTTCTGCAGATGAAGCTGACGGATGGTGTGTTTGACGCCTCGACGCTGTCGCAGAACCGCCGCCGGCGCTTCAA
CGACACCTCGGTTGCACAGGACATCTTTGATCATATCGTTGAGCAGGCGATCCGTCATGGCCTGGTGGATGGCACGGTGCTTTATACGGATTCAACGCAT
CTGAAGGCGAATGCCAACAAGGGCAAATATGATCTTGCGATGATCGAAAAGTCGCGTTCCGATTACTGGGCCGACCTCGACCGAGCGATTGAGGCCGAGC
GGGCACTCCACGGCCAGAAGCCCTTGAAGGAAAAAGAGCGCGAGGCGGAGGTGAAGGAAACCAAGGTGTCGCGCACCGATCCCGACAGCGGCTACATGGT
GCGCGACGGCAAGCCGAAGGGCTTCTTCTACCTCGATCACCGCACGGTGGATGGCAAGCTGGCGATCATCACCGACACCCATGTCACGCCCGCCAATGTG
CATGACAGTATCGTCTATCTCCACCGGCTGGACCGGCAGCGTGAGCGGTTCGGCTTCGAGGTCGGTGCTGTCGGGCTGGATGCCGGCTATGCGACATCCG
GCATCGCCAAGGGTCTTGAAGACCGCACCATCCTCGGTGTCACCGGCTATCGTAATCCGACCCCGCCCAGAGCCGGCATGATGCGCAAGTCGAAATTCGG
CTATGAGCCCGAGACAGACGGTTACCGCTGCCCCGAAGGCCAACTGCTCGCCTATGCCACCACCGACCGCAACGGTTATCGCCACTATCGTTCGGATCCT
GCCATCTGCCGCGATTGTCCGTTGTTGGCCTCCTGCACCAATAACGCCACGGCGACACGTACCATCACCCGCCATGTCTGGGCCGATGCCCGCCAGCGCA
CCGATGCCAACCGCCTGACCCCTTGGGGCAAGGCAATCTACAAGCGGCGAAAGGAGACGGTCGAACGTTCCTTCGCCGATGCCAAGCAGCTTCACGGGCA
TCGCTATGCCCGCTTCCGAAGTCTCACCCGCGTCTCATGCCAGTGCCTGTTGGCTGCGGCCGCCCAAAACATCAAGAAGATCGCAATGGCGCTCACCAAA
GCGCCAAAACCAGCCATGGCGTGAGCCGATACATCCTTCTTCACCTCCGCCAAAACAATGCCGCCAAAAAAATCCAATCCGCAAAAACAAAACCCGCCGA
AAAATCGACGGGTTTGTCAGCGGTCTG
GCTCGACAGCCTGGTGCCAAAGGATCACTTGCTTCGCAAGATCGATGCGGTGATCGACTTTTCCTTCATCCATGGCCGGGTTGCGGGGCTTTATTGCGCC
GACAACGGCCGCCCGCCGCTTGATCCGACCTTGATGTTCAAGGCGCTGTTCCTTGGCTACCTGTTCGGCATCCGCTCGGAGCGTCAGCTGGTGCGCGAGA
TCGAGGTCAACGTCGCCTATCGCTGGTTTCTGCAGATGAAGCTGACGGATGGTGTGTTTGACGCCTCGACGCTGTCGCAGAACCGCCGCCGGCGCTTCAA
CGACACCTCGGTTGCACAGGACATCTTTGATCATATCGTTGAGCAGGCGATCCGTCATGGCCTGGTGGATGGCACGGTGCTTTATACGGATTCAACGCAT
CTGAAGGCGAATGCCAACAAGGGCAAATATGATCTTGCGATGATCGAAAAGTCGCGTTCCGATTACTGGGCCGACCTCGACCGAGCGATTGAGGCCGAGC
GGGCACTCCACGGCCAGAAGCCCTTGAAGGAAAAAGAGCGCGAGGCGGAGGTGAAGGAAACCAAGGTGTCGCGCACCGATCCCGACAGCGGCTACATGGT
GCGCGACGGCAAGCCGAAGGGCTTCTTCTACCTCGATCACCGCACGGTGGATGGCAAGCTGGCGATCATCACCGACACCCATGTCACGCCCGCCAATGTG
CATGACAGTATCGTCTATCTCCACCGGCTGGACCGGCAGCGTGAGCGGTTCGGCTTCGAGGTCGGTGCTGTCGGGCTGGATGCCGGCTATGCGACATCCG
GCATCGCCAAGGGTCTTGAAGACCGCACCATCCTCGGTGTCACCGGCTATCGTAATCCGACCCCGCCCAGAGCCGGCATGATGCGCAAGTCGAAATTCGG
CTATGAGCCCGAGACAGACGGTTACCGCTGCCCCGAAGGCCAACTGCTCGCCTATGCCACCACCGACCGCAACGGTTATCGCCACTATCGTTCGGATCCT
GCCATCTGCCGCGATTGTCCGTTGTTGGCCTCCTGCACCAATAACGCCACGGCGACACGTACCATCACCCGCCATGTCTGGGCCGATGCCCGCCAGCGCA
CCGATGCCAACCGCCTGACCCCTTGGGGCAAGGCAATCTACAAGCGGCGAAAGGAGACGGTCGAACGTTCCTTCGCCGATGCCAAGCAGCTTCACGGGCA
TCGCTATGCCCGCTTCCGAAGTCTCACCCGCGTCTCATGCCAGTGCCTGTTGGCTGCGGCCGCCCAAAACATCAAGAAGATCGCAATGGCGCTCACCAAA
GCGCCAAAACCAGCCATGGCGTGAGCCGATACATCCTTCTTCACCTCCGCCAAAACAATGCCGCCAAAAAAATCCAATCCGCAAAAACAAAACCCGCCGA
AAAATCGACGGGTTTGTCAGCGGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1371 bp | 456 aa | 54 | 1424 | + | No |
Chemistry : DDE
ORF sequence :
MLKKPAPAQTALEMVTLDSLVPKDHLLRKIDAVIDFSFIHGRVAGLYCADNGRPPLDPTLMFKALFLGYLFGIRSERQLVREIEVNVAYRWFLQMKLTDG
VFDASTLSQNRRRRFNDTSVAQDIFDHIVEQAIRHGLVDGTVLYTDSTHLKANANKGKYDLAMIEKSRSDYWADLDRAIEAERALHGQKPLKEKEREAEV
KETKVSRTDPDSGYMVRDGKPKGFFYLDHRTVDGKLAIITDTHVTPANVHDSIVYLHRLDRQRERFGFEVGAVGLDAGYATSGIAKGLEDRTILGVTGYR
NPTPPRAGMMRKSKFGYEPETDGYRCPEGQLLAYATTDRNGYRHYRSDPAICRDCPLLASCTNNATATRTITRHVWADARQRTDANRLTPWGKAIYKRRK
ETVERSFADAKQLHGHRYARFRSLTRVSCQCLLAAAAQNIKKIAMALTKAPKPAMA
VFDASTLSQNRRRRFNDTSVAQDIFDHIVEQAIRHGLVDGTVLYTDSTHLKANANKGKYDLAMIEKSRSDYWADLDRAIEAERALHGQKPLKEKEREAEV
KETKVSRTDPDSGYMVRDGKPKGFFYLDHRTVDGKLAIITDTHVTPANVHDSIVYLHRLDRQRERFGFEVGAVGLDAGYATSGIAKGLEDRTILGVTGYR
NPTPPRAGMMRKSKFGYEPETDGYRCPEGQLLAYATTDRNGYRHYRSDPAICRDCPLLASCTNNATATRTITRHVWADARQRTDANRLTPWGKAIYKRRK
ETVERSFADAKQLHGHRYARFRSLTRVSCQCLLAAAAQNIKKIAMALTKAPKPAMA
Blast result :
Comments
ISRle11 is 77% aa similar to ISBma2.
References
1] ISfinder annotation (2010)
2] Young,J.P., Crossman,L.C., Johnston,A.W., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,I., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7 (4), R34
2] Young,J.P., Crossman,L.C., Johnston,A.W., Thomson,N.R., Ghazoui,Z.F., Hull,K.H., Wexler,M., Curson,A.R., Todd,J.D., Poole,P.S., Mauchline,T.H., East,A.K., Quail,M.A., Churcher,C., Arrowsmith,C., Cherevach,I., Chillingworth,T., Clarke,K., Cronin,A., Davis,P., Fraser,A., Hance,Z., Hauser,H., Jagels,K., Moule,S., Mungall,K., Norbertczak,H., Rabbinowitsch,E., Sanders,M., Simmonds,M., Whitehead,S. and Parkhill,J. (2006) Genome Biol. 7 (4), R34