ISGho1
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ADAQ01000011 | ND | Grimontia hollisae | Grimontia hollisae CIP 101886 VHA |
DNA section
IS Length : 1618 bp
Ends
IR Length : 26/30
IRL : CAGGCGCCGTTCAGACTGCTGACAAAGCCCTGGCCATTTGGCTGGGGCTT
IRR : GAGGCGCCGTTCAGATTGCTGACTAACCCCGCTTTTTCAAGCGGGGTTTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TAACTACCTTAAAACAACGGCGCCT | AGGCGCCGTTTAACCAACGAATCCCGG | 0 |
DNA sequence
CAGGCGCCGTTCAGACTGCTGACAAAGCCCTGGCCATTTGGCTGGGGCTTTGATCTAATAAGGGATAAGCAAACCAATCATGGATGTGGTGACATGCTTA
AAGACCCTGGCCCTCAGCAATATGAAATCGAGATGGTGACACTCGAACAGTTGGTCCCCAAAAACCATCTCGTTCGCAAAATCGATGCTGCCGTCGACTT
TGAATTTATCCGCGACGAGGTCGCCCACCTCTATTGCCACTACAATGGCCGCCCTGCGATAGACCCCGTTCGCCTGTTCAAAATCCTGCTCCTTGGCTTC
CTCTTCGGCGTCAAAAGTGAACGCCAGCTCGTCAAAGACATCGAGGTCAATGTCGCTTACCGCTGGTTCCTGCGAATGTCACTCACTGAAAAGGTGATTG
ATGCGTCCACCTTGAGCCAGAATCGCCGCCGTCGCTTCAACGATACCGACGTGTTCGAACGCATCTTCATCCGTATCGTCGAACAGGCGATGAGCAAAGG
CATGGTCGATGGACGTACCTTGTTTACCGACAGCACTCACCTGAAAGCCAATGCCAACAAGCGTAAATACCGTAACGAACTAGTGAAACAAAACGTCAGT
GCTTATGCCGAGCTGTTGGATGAAGCGGTTGACGCTGACCGCGCAGCAGAAGGAAAACGCCCACTCAAGCCGAAAGATGGTCACATTGAGAAAAACACCA
AAGTCAGCACCACCGACCCAGACAGCGGGTTCATGACACGGGACCAAAAACCACAGGGCTTCTTCTACCTTGACCATCGCACCGTCGACGGCAAACACGG
CATCATCCTCGACACCCATGTCACGCCAGGCAATGTGAATGATGCCCAACCGTATATCGCTCGTCTGGATACCACGTTAGCGCGCTTTACGCTCTCGCCT
GTTGCCGCCGGGCTTGATGCCGGTTACTTCACCGCGACTATCTGCCATGAACTGGAGCAGCGCCAAATCCTGCCGGTGATGGGATACCGCCGGCCTCACC
GTACGAAGAATCCTATCAAGAAAAAGCACTTTCATTACGATAAAGAGACGGACCGCTATCTCTGTCCTCAGGGACAGGAGCTGATTTACAAGACCACCAA
CCGTCAGGCATACCGTGAATATCACTCTGATCCGCAGACATGCAAAACCTGCCCACTGCGTGAGGATTGCACCAAGAGTAAAAACCACAAACGGGTGATA
ACCCGGCACCTGTTCGAGAAATCGGTTGAGAATGCCAACGCTCTGAGACTGACTGCCTGGGGAAAGAAAGTGTACCGACGACGGGCAGAGACGGTGGAGC
GCAGCTTCGCGGATGCCAAACAGCACCATGGTCATCGCTATGCGAGATTCCGAGGCTTGTTGAAAGTACAAATCCAGTGCTTTCTGGCGGCAGCGGCACA
GAACATCAAGAAGATAGCCCTGATGGAGGCTTATCTTCGCAAAACTGGGCTCAATGCGCGCCAAATAGTCCAGATAGTGACGCAATTTAGCGTCTATGGG
CTAAAAGCAGCCTGAACATAACAATATGGAAAAATAGCGTGATCGCGGCCTTCGGCCGCTAACAAAAGAAAACCCCGCTTGAAAAAGCGGGGTTAGTCAG
CAATCTGAACGGCGCCTC
AAGACCCTGGCCCTCAGCAATATGAAATCGAGATGGTGACACTCGAACAGTTGGTCCCCAAAAACCATCTCGTTCGCAAAATCGATGCTGCCGTCGACTT
TGAATTTATCCGCGACGAGGTCGCCCACCTCTATTGCCACTACAATGGCCGCCCTGCGATAGACCCCGTTCGCCTGTTCAAAATCCTGCTCCTTGGCTTC
CTCTTCGGCGTCAAAAGTGAACGCCAGCTCGTCAAAGACATCGAGGTCAATGTCGCTTACCGCTGGTTCCTGCGAATGTCACTCACTGAAAAGGTGATTG
ATGCGTCCACCTTGAGCCAGAATCGCCGCCGTCGCTTCAACGATACCGACGTGTTCGAACGCATCTTCATCCGTATCGTCGAACAGGCGATGAGCAAAGG
CATGGTCGATGGACGTACCTTGTTTACCGACAGCACTCACCTGAAAGCCAATGCCAACAAGCGTAAATACCGTAACGAACTAGTGAAACAAAACGTCAGT
GCTTATGCCGAGCTGTTGGATGAAGCGGTTGACGCTGACCGCGCAGCAGAAGGAAAACGCCCACTCAAGCCGAAAGATGGTCACATTGAGAAAAACACCA
AAGTCAGCACCACCGACCCAGACAGCGGGTTCATGACACGGGACCAAAAACCACAGGGCTTCTTCTACCTTGACCATCGCACCGTCGACGGCAAACACGG
CATCATCCTCGACACCCATGTCACGCCAGGCAATGTGAATGATGCCCAACCGTATATCGCTCGTCTGGATACCACGTTAGCGCGCTTTACGCTCTCGCCT
GTTGCCGCCGGGCTTGATGCCGGTTACTTCACCGCGACTATCTGCCATGAACTGGAGCAGCGCCAAATCCTGCCGGTGATGGGATACCGCCGGCCTCACC
GTACGAAGAATCCTATCAAGAAAAAGCACTTTCATTACGATAAAGAGACGGACCGCTATCTCTGTCCTCAGGGACAGGAGCTGATTTACAAGACCACCAA
CCGTCAGGCATACCGTGAATATCACTCTGATCCGCAGACATGCAAAACCTGCCCACTGCGTGAGGATTGCACCAAGAGTAAAAACCACAAACGGGTGATA
ACCCGGCACCTGTTCGAGAAATCGGTTGAGAATGCCAACGCTCTGAGACTGACTGCCTGGGGAAAGAAAGTGTACCGACGACGGGCAGAGACGGTGGAGC
GCAGCTTCGCGGATGCCAAACAGCACCATGGTCATCGCTATGCGAGATTCCGAGGCTTGTTGAAAGTACAAATCCAGTGCTTTCTGGCGGCAGCGGCACA
GAACATCAAGAAGATAGCCCTGATGGAGGCTTATCTTCGCAAAACTGGGCTCAATGCGCGCCAAATAGTCCAGATAGTGACGCAATTTAGCGTCTATGGG
CTAAAAGCAGCCTGAACATAACAATATGGAAAAATAGCGTGATCGCGGCCTTCGGCCGCTAACAAAAGAAAACCCCGCTTGAAAAAGCGGGGTTAGTCAG
CAATCTGAACGGCGCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1422 bp | 473 aa | 94 | 1515 | + | No |
Chemistry : DDE
ORF sequence :
MLKDPGPQQYEIEMVTLEQLVPKNHLVRKIDAAVDFEFIRDEVAHLYCHYNGRPAIDPVRLFKILLLGFLFGVKSERQLVKDIEVNVAYRWFLRMSLTEK
VIDASTLSQNRRRRFNDTDVFERIFIRIVEQAMSKGMVDGRTLFTDSTHLKANANKRKYRNELVKQNVSAYAELLDEAVDADRAAEGKRPLKPKDGHIEK
NTKVSTTDPDSGFMTRDQKPQGFFYLDHRTVDGKHGIILDTHVTPGNVNDAQPYIARLDTTLARFTLSPVAAGLDAGYFTATICHELEQRQILPVMGYRR
PHRTKNPIKKKHFHYDKETDRYLCPQGQELIYKTTNRQAYREYHSDPQTCKTCPLREDCTKSKNHKRVITRHLFEKSVENANALRLTAWGKKVYRRRAET
VERSFADAKQHHGHRYARFRGLLKVQIQCFLAAAAQNIKKIALMEAYLRKTGLNARQIVQIVTQFSVYGLKAA
VIDASTLSQNRRRRFNDTDVFERIFIRIVEQAMSKGMVDGRTLFTDSTHLKANANKRKYRNELVKQNVSAYAELLDEAVDADRAAEGKRPLKPKDGHIEK
NTKVSTTDPDSGFMTRDQKPQGFFYLDHRTVDGKHGIILDTHVTPGNVNDAQPYIARLDTTLARFTLSPVAAGLDAGYFTATICHELEQRQILPVMGYRR
PHRTKNPIKKKHFHYDKETDRYLCPQGQELIYKTTNRQAYREYHSDPQTCKTCPLREDCTKSKNHKRVITRHLFEKSVENANALRLTAWGKKVYRRRAET
VERSFADAKQHHGHRYARFRGLLKVQIQCFLAAAAQNIKKIALMEAYLRKTGLNARQIVQIVTQFSVYGLKAA
Blast result :
Comments
ISGho1 is 77% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Munk,A.C., Tapia,R., Green,L., Rogers,Y., Detter,J.C., Bruce,D., Brettin,T.S., Colwell,R., Huq,A., Grim,C.J., Hasan,N.A., Vonstein,V. and Bartels,D. (2009) Direct submission GenBank.
2] Munk,A.C., Tapia,R., Green,L., Rogers,Y., Detter,J.C., Bruce,D., Brettin,T.S., Colwell,R., Huq,A., Grim,C.J., Hasan,N.A., Vonstein,V. and Bartels,D. (2009) Direct submission GenBank.