ISBse2
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABHZ01000012 | ND | Bacillus selenitireducens | Bacillus selenitireducens MLS10 |
DNA section
IS Length : 1418 bp
Ends
IR Length : 13/15
IRL : GAACTTAAAGAAAAATACTGCCTGGATAATGGACGGAATGCGATTGATCC
IRR : GAACTCACAGAAAAAAAAGATGACCAATTTCCAATTATTTTGGAGTTGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGTCTATGAA | ACTTTCGTTC | 0 |
DNA sequence
GAACTTAAAGAAAAATACTGCCTGGATAATGGACGGAATGCGATTGATCCCATTCGGATGTTTTAATACTTATTATTGAAAACGATCTTCGATCTTTCGG
ATGTAGATTTGGTTGAACGTTCGAAATATGATATGTCATTCAAATATTTTTTAGACATGACGCCTGAAGAAGATGTGATTGATCCAAGCTCCCTGACGAA
GTTTCGTAAGCTCAGGCTCAAAGACTTGAATCTGTTGGACTTGCTCATCCATAAAACCGTTGAAATAGCGTTGGAAGAGGACATTATTAAAAGCCGTTCG
ATTATTGTGGATGCAACACATACCAAAGCCCGTTACAATCTATTAAAACCAAGAGACGTACTTAGGGATCGAGCCAAAAAGCTGAGAAAGGCGATTTACC
AGATCGATGAATCCATGAAAGAAAAATTCCCATCCAAAACACAGGCGGATGACTTAGAAGATGAGATCCAATATACCGAGAAACTCATCAAGGTGATTGA
GAAGGAAGCAACGCTCTCCAATTATCCAAACATCAAAGAGCGATTGAATAGATTAAAGGAAACGGTTGAAGATGATGTGGAACATCTGCGATGTTCTGAA
GATCAGGATGCAAAAGTGGGACACAAGTCCGCCGATACCTCTTTCTTTGGATATAAGAGCCATCTGGCGATCAATGAAGAAAGAATCATTACCGCAGCTG
TTATTACGACTAGGGAAAAGAACGACGGTAAGCAACTCGAAGCCTTGATTGAAAAAAGCAAAGAAGCAGGTATGGCTGTTGATACAATCATTGGAGATGC
AGCCTATTCCGAAAAAGGAAATATTGCGTACAGTAATGAAAACAACATAAGACTAGTTGCTAAGTTAAATCCTTCAGTGACTCAAGGTAACCGCAAAAAG
GAAGATGAATTTCAATTCAATAAAGATGCCGGTATGTATGTTTGCAAGGCAGGTCATATGGCAATAAGAAAAGCGAAAAATGGAAAAGCAATAGCAGGGA
GAAATCAAAAAATAAAATATTATTTTGATATTGAACTATGCAAAAGATGCCCGATGAAAGAAGGTTGTTACATCGAAGGTGCTAAAAGTAAAACGTATGG
GGTCTCAATAAAATCTAAAGAACACACTGAGCAAATCGAATTTCAAATGAGTGACTATTTCAAGGAAAAATCAAAAGAACGTTATAAAATTGAAGCAAAA
AACAATGAATTAAAGCACCGACACGGGTATGAAGTAGCCACTTCCTCGGGTCTGATTGGCATGGAATTACAAGGAGCAATGGCCATATTTACAGTAAATC
TCAAAAGAATACTGAAGCTATCGCAAGAAAAATAGAAAAAGAATCAGACAATAGTGAAAAAAAAGACGACCAACTCCAAAATAATTGGAAATTGGTCATC
TTTTTTTTCTGTGAGTTC
ATGTAGATTTGGTTGAACGTTCGAAATATGATATGTCATTCAAATATTTTTTAGACATGACGCCTGAAGAAGATGTGATTGATCCAAGCTCCCTGACGAA
GTTTCGTAAGCTCAGGCTCAAAGACTTGAATCTGTTGGACTTGCTCATCCATAAAACCGTTGAAATAGCGTTGGAAGAGGACATTATTAAAAGCCGTTCG
ATTATTGTGGATGCAACACATACCAAAGCCCGTTACAATCTATTAAAACCAAGAGACGTACTTAGGGATCGAGCCAAAAAGCTGAGAAAGGCGATTTACC
AGATCGATGAATCCATGAAAGAAAAATTCCCATCCAAAACACAGGCGGATGACTTAGAAGATGAGATCCAATATACCGAGAAACTCATCAAGGTGATTGA
GAAGGAAGCAACGCTCTCCAATTATCCAAACATCAAAGAGCGATTGAATAGATTAAAGGAAACGGTTGAAGATGATGTGGAACATCTGCGATGTTCTGAA
GATCAGGATGCAAAAGTGGGACACAAGTCCGCCGATACCTCTTTCTTTGGATATAAGAGCCATCTGGCGATCAATGAAGAAAGAATCATTACCGCAGCTG
TTATTACGACTAGGGAAAAGAACGACGGTAAGCAACTCGAAGCCTTGATTGAAAAAAGCAAAGAAGCAGGTATGGCTGTTGATACAATCATTGGAGATGC
AGCCTATTCCGAAAAAGGAAATATTGCGTACAGTAATGAAAACAACATAAGACTAGTTGCTAAGTTAAATCCTTCAGTGACTCAAGGTAACCGCAAAAAG
GAAGATGAATTTCAATTCAATAAAGATGCCGGTATGTATGTTTGCAAGGCAGGTCATATGGCAATAAGAAAAGCGAAAAATGGAAAAGCAATAGCAGGGA
GAAATCAAAAAATAAAATATTATTTTGATATTGAACTATGCAAAAGATGCCCGATGAAAGAAGGTTGTTACATCGAAGGTGCTAAAAGTAAAACGTATGG
GGTCTCAATAAAATCTAAAGAACACACTGAGCAAATCGAATTTCAAATGAGTGACTATTTCAAGGAAAAATCAAAAGAACGTTATAAAATTGAAGCAAAA
AACAATGAATTAAAGCACCGACACGGGTATGAAGTAGCCACTTCCTCGGGTCTGATTGGCATGGAATTACAAGGAGCAATGGCCATATTTACAGTAAATC
TCAAAAGAATACTGAAGCTATCGCAAGAAAAATAGAAAAAGAATCAGACAATAGTGAAAAAAAAGACGACCAACTCCAAAATAATTGGAAATTGGTCATC
TTTTTTTTCTGTGAGTTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1260 bp | 419 aa | 76 | 1335 | + | No |
Chemistry : DDE
ORF sequence :
MKTIFDLSDVDLVERSKYDMSFKYFLDMTPEEDVIDPSSLTKFRKLRLKDLNLLDLLIHKTVEIALEEDIIKSRSIIVDATHTKARYNLLKPRDVLRDRA
KKLRKAIYQIDESMKEKFPSKTQADDLEDEIQYTEKLIKVIEKEATLSNYPNIKERLNRLKETVEDDVEHLRCSEDQDAKVGHKSADTSFFGYKSHLAIN
EERIITAAVITTREKNDGKQLEALIEKSKEAGMAVDTIIGDAAYSEKGNIAYSNENNIRLVAKLNPSVTQGNRKKEDEFQFNKDAGMYVCKAGHMAIRKA
KNGKAIAGRNQKIKYYFDIELCKRCPMKEGCYIEGAKSKTYGVSIKSKEHTEQIEFQMSDYFKEKSKERYKIEAKNNELKHRHGYEVATSSGLIGMELQG
AMAIFTVNLKRILKLSQEK
KKLRKAIYQIDESMKEKFPSKTQADDLEDEIQYTEKLIKVIEKEATLSNYPNIKERLNRLKETVEDDVEHLRCSEDQDAKVGHKSADTSFFGYKSHLAIN
EERIITAAVITTREKNDGKQLEALIEKSKEAGMAVDTIIGDAAYSEKGNIAYSNENNIRLVAKLNPSVTQGNRKKEDEFQFNKDAGMYVCKAGHMAIRKA
KNGKAIAGRNQKIKYYFDIELCKRCPMKEGCYIEGAKSKTYGVSIKSKEHTEQIEFQMSDYFKEKSKERYKIEAKNNELKHRHGYEVATSSGLIGMELQG
AMAIFTVNLKRILKLSQEK
Blast result :
Comments
ISbse2 is 84% aa similar to ISBcy1.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Richardson,P. (2007) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L. and Richardson,P. (2007) Direct submission GenBank.