ISSwo3
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008346 | ND | Syntrophomonas wolfei | Syntrophomonas wolfei subsp. wolfei Goettingen |
DNA section
IS Length : 1695 bp
Ends
IR Length : 25/26
IRL : GGACCGTCCGAAACCACTGAAAAAGTCCGGGAAAAGTCCGATAAAAACAT
IRR : GGACGGTCCGAAACCACTGAAAAAGTATCCTTTTTAAGCCGCCTGGGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATATCAACA | CTGTGATATG | 0 |
DNA sequence
GGACCGTCCGAAACCACTGAAAAAGTCCGGGAAAAGTCCGATAAAAACATAAAAAGCATACCCGCCTATAGTATAATTAAGTTAGCACAACCAAACAACA
CCAGAGGGGGAATGCTTTTCATGTTAGTTGAAACCACCGTTAAACAAGGCAGCTTCTACAACGTATTATACCAAATGATTCCGGATAATCACATACTCAA
ACGGATAGATTCCGCCATAGATCTCAGCTTTGTCAATGAACTATTGGCAGATAGATATTGCAAAAACTTTGGCAGACCAGCTAAAGAACCAGAGATGATG
CTAAGAATACAAATCTTAAAATATCTATACAACCTGTCTGATGAACAATTGATACAGGATTTGAGCGTAAACCTGGCTTACAAATGGTTTGTAGGACTTA
ACCCCGAAGACCCATTGCCTGAAACCAGCCTACTGACCAAATTCCGTACCCAACGCTTAAAGGATATCAGCATGGATGCCATTATTACCGAAATAGTAAG
GCAATGCATTGAAAGGGGCATAATCAAAGGTAGTAACGGCATCGTTATTGATACCACCCATATTGAAGCCAATACTATTAAAAAAGTACCCGAACGCATC
ATGAAGCAGTTGGCCAGAAACATTTTCAAGGCCATGGGGCAGGAAGAATACGAAATACCGGATTATACCCAAATAGAAGATCATGTTGCAGCCAAACAAA
TTATGAAAGATTATCTGGAAGACCTGATAGAACAAGTAAGCAAAGAAAGCTCCGAGGAAGTCATCCAGGCAGTCCAGGAAGCCCAGGAAATCTTAGAAAG
CGATCTGTTCATAGAACAAAAAGGCATCCGTTCCCTGGTAGACAAAGATGCCCGAGTAGGCCACAAAACCAAGACCCAAAACTTCTATGGTTACAAGGCA
GAAATATGCCAAACTACCAATGGCAGTTTAATAACTAGCATTACCATAGAACCCGGTTCCTATGTTGATGGCAGCAATTTCAAAGAGCATCTTGAAGAAA
CCCAAAAATCCGGATTGACCGTAACCGGAGTATATGGCGACAAAGCTTATTTCCGTCCCGACATCCTTAACCTGATCAAGGAAAATCAAGCAACATCATA
TATACCGGTAAGCGCTAGTGCTTACAAAATTGATGAAAAGCTATTTAGTTATAACAAGGACAGTGACCAATGGTTTTGTGTAATGGGAAATGAAACGGTG
AAAATAAAATCCAAGACCCGTGAACGGAACGGCAAAAAACAAAAGTACCTGGATTACACTTTTGAACGTGAGTTCTGTCGCAATTGTCCTCGACGAAGTG
AATGCATAGGTAAAAGTAAGCGTATAGCCAAGTTAATGACCATCAGCATAAATACCCCTGAGTTGTATGAATACAGCCAAAGAGCTAAAACCTCGGATTT
CGTTGAGGAATACCGAAAGCGAGCGAAGATCGAACCCAAGAATGCAGAACTAAAAAGATTCCACGGATTGGACCGGGCCAAAGGCTACGGTCTACGAAGT
ATCCGCATTCAGGCCAAACTAACAGCCCTATCGGTAAATTTAAAGCGGATAGCCAAGCTGGTATCCGCCTTAAAGGGTTTACATGTTCTCATTTTGAAGT
TATTATCTCCGTTAGTGGTTAACCGACCAGATTGTGACTGGGTAGCCGCCCAGGCGGCTTAAAAAGGATACTTTTTCAGTGGTTTCGGACCGTCC
CCAGAGGGGGAATGCTTTTCATGTTAGTTGAAACCACCGTTAAACAAGGCAGCTTCTACAACGTATTATACCAAATGATTCCGGATAATCACATACTCAA
ACGGATAGATTCCGCCATAGATCTCAGCTTTGTCAATGAACTATTGGCAGATAGATATTGCAAAAACTTTGGCAGACCAGCTAAAGAACCAGAGATGATG
CTAAGAATACAAATCTTAAAATATCTATACAACCTGTCTGATGAACAATTGATACAGGATTTGAGCGTAAACCTGGCTTACAAATGGTTTGTAGGACTTA
ACCCCGAAGACCCATTGCCTGAAACCAGCCTACTGACCAAATTCCGTACCCAACGCTTAAAGGATATCAGCATGGATGCCATTATTACCGAAATAGTAAG
GCAATGCATTGAAAGGGGCATAATCAAAGGTAGTAACGGCATCGTTATTGATACCACCCATATTGAAGCCAATACTATTAAAAAAGTACCCGAACGCATC
ATGAAGCAGTTGGCCAGAAACATTTTCAAGGCCATGGGGCAGGAAGAATACGAAATACCGGATTATACCCAAATAGAAGATCATGTTGCAGCCAAACAAA
TTATGAAAGATTATCTGGAAGACCTGATAGAACAAGTAAGCAAAGAAAGCTCCGAGGAAGTCATCCAGGCAGTCCAGGAAGCCCAGGAAATCTTAGAAAG
CGATCTGTTCATAGAACAAAAAGGCATCCGTTCCCTGGTAGACAAAGATGCCCGAGTAGGCCACAAAACCAAGACCCAAAACTTCTATGGTTACAAGGCA
GAAATATGCCAAACTACCAATGGCAGTTTAATAACTAGCATTACCATAGAACCCGGTTCCTATGTTGATGGCAGCAATTTCAAAGAGCATCTTGAAGAAA
CCCAAAAATCCGGATTGACCGTAACCGGAGTATATGGCGACAAAGCTTATTTCCGTCCCGACATCCTTAACCTGATCAAGGAAAATCAAGCAACATCATA
TATACCGGTAAGCGCTAGTGCTTACAAAATTGATGAAAAGCTATTTAGTTATAACAAGGACAGTGACCAATGGTTTTGTGTAATGGGAAATGAAACGGTG
AAAATAAAATCCAAGACCCGTGAACGGAACGGCAAAAAACAAAAGTACCTGGATTACACTTTTGAACGTGAGTTCTGTCGCAATTGTCCTCGACGAAGTG
AATGCATAGGTAAAAGTAAGCGTATAGCCAAGTTAATGACCATCAGCATAAATACCCCTGAGTTGTATGAATACAGCCAAAGAGCTAAAACCTCGGATTT
CGTTGAGGAATACCGAAAGCGAGCGAAGATCGAACCCAAGAATGCAGAACTAAAAAGATTCCACGGATTGGACCGGGCCAAAGGCTACGGTCTACGAAGT
ATCCGCATTCAGGCCAAACTAACAGCCCTATCGGTAAATTTAAAGCGGATAGCCAAGCTGGTATCCGCCTTAAAGGGTTTACATGTTCTCATTTTGAAGT
TATTATCTCCGTTAGTGGTTAACCGACCAGATTGTGACTGGGTAGCCGCCCAGGCGGCTTAAAAAGGATACTTTTTCAGTGGTTTCGGACCGTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1542 bp | 513 aa | 121 | 1662 | + | No |
Chemistry : DDE
ORF sequence :
MLVETTVKQGSFYNVLYQMIPDNHILKRIDSAIDLSFVNELLADRYCKNFGRPAKEPEMMLRIQILKYLYNLSDEQLIQDLSVNLAYKWFVGLNPEDPLP
ETSLLTKFRTQRLKDISMDAIITEIVRQCIERGIIKGSNGIVIDTTHIEANTIKKVPERIMKQLARNIFKAMGQEEYEIPDYTQIEDHVAAKQIMKDYLE
DLIEQVSKESSEEVIQAVQEAQEILESDLFIEQKGIRSLVDKDARVGHKTKTQNFYGYKAEICQTTNGSLITSITIEPGSYVDGSNFKEHLEETQKSGLT
VTGVYGDKAYFRPDILNLIKENQATSYIPVSASAYKIDEKLFSYNKDSDQWFCVMGNETVKIKSKTRERNGKKQKYLDYTFEREFCRNCPRRSECIGKSK
RIAKLMTISINTPELYEYSQRAKTSDFVEEYRKRAKIEPKNAELKRFHGLDRAKGYGLRSIRIQAKLTALSVNLKRIAKLVSALKGLHVLILKLLSPLVV
NRPDCDWVAAQAA
ETSLLTKFRTQRLKDISMDAIITEIVRQCIERGIIKGSNGIVIDTTHIEANTIKKVPERIMKQLARNIFKAMGQEEYEIPDYTQIEDHVAAKQIMKDYLE
DLIEQVSKESSEEVIQAVQEAQEILESDLFIEQKGIRSLVDKDARVGHKTKTQNFYGYKAEICQTTNGSLITSITIEPGSYVDGSNFKEHLEETQKSGLT
VTGVYGDKAYFRPDILNLIKENQATSYIPVSASAYKIDEKLFSYNKDSDQWFCVMGNETVKIKSKTRERNGKKQKYLDYTFEREFCRNCPRRSECIGKSK
RIAKLMTISINTPELYEYSQRAKTSDFVEEYRKRAKIEPKNAELKRFHGLDRAKGYGLRSIRIQAKLTALSVNLKRIAKLVSALKGLHVLILKLLSPLVV
NRPDCDWVAAQAA
Blast result :
Comments
ISSwo3 is 46% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Sims,D., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Sims,D., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M. and Richardson,P. (2006) Direct submission GenBank.