ISSwo3

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008346 ND Syntrophomonas wolfei
Syntrophomonas wolfei subsp. wolfei Goettingen
DNA section
IS Length : 1695 bp

Ends


IR Length : 25/26

IRL : GGACCGTCCGAAACCACTGAAAAAGTCCGGGAAAAGTCCGATAAAAACAT
IRR : GGACGGTCCGAAACCACTGAAAAAGTATCCTTTTTAAGCCGCCTGGGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TATATCAACACTGTGATATG0

DNA sequence

GGACCGTCCGAAACCACTGAAAAAGTCCGGGAAAAGTCCGATAAAAACATAAAAAGCATACCCGCCTATAGTATAATTAAGTTAGCACAACCAAACAACA
CCAGAGGGGGAATGCTTTTCATGTTAGTTGAAACCACCGTTAAACAAGGCAGCTTCTACAACGTATTATACCAAATGATTCCGGATAATCACATACTCAA
ACGGATAGATTCCGCCATAGATCTCAGCTTTGTCAATGAACTATTGGCAGATAGATATTGCAAAAACTTTGGCAGACCAGCTAAAGAACCAGAGATGATG
CTAAGAATACAAATCTTAAAATATCTATACAACCTGTCTGATGAACAATTGATACAGGATTTGAGCGTAAACCTGGCTTACAAATGGTTTGTAGGACTTA
ACCCCGAAGACCCATTGCCTGAAACCAGCCTACTGACCAAATTCCGTACCCAACGCTTAAAGGATATCAGCATGGATGCCATTATTACCGAAATAGTAAG
GCAATGCATTGAAAGGGGCATAATCAAAGGTAGTAACGGCATCGTTATTGATACCACCCATATTGAAGCCAATACTATTAAAAAAGTACCCGAACGCATC
ATGAAGCAGTTGGCCAGAAACATTTTCAAGGCCATGGGGCAGGAAGAATACGAAATACCGGATTATACCCAAATAGAAGATCATGTTGCAGCCAAACAAA
TTATGAAAGATTATCTGGAAGACCTGATAGAACAAGTAAGCAAAGAAAGCTCCGAGGAAGTCATCCAGGCAGTCCAGGAAGCCCAGGAAATCTTAGAAAG
CGATCTGTTCATAGAACAAAAAGGCATCCGTTCCCTGGTAGACAAAGATGCCCGAGTAGGCCACAAAACCAAGACCCAAAACTTCTATGGTTACAAGGCA
GAAATATGCCAAACTACCAATGGCAGTTTAATAACTAGCATTACCATAGAACCCGGTTCCTATGTTGATGGCAGCAATTTCAAAGAGCATCTTGAAGAAA
CCCAAAAATCCGGATTGACCGTAACCGGAGTATATGGCGACAAAGCTTATTTCCGTCCCGACATCCTTAACCTGATCAAGGAAAATCAAGCAACATCATA
TATACCGGTAAGCGCTAGTGCTTACAAAATTGATGAAAAGCTATTTAGTTATAACAAGGACAGTGACCAATGGTTTTGTGTAATGGGAAATGAAACGGTG
AAAATAAAATCCAAGACCCGTGAACGGAACGGCAAAAAACAAAAGTACCTGGATTACACTTTTGAACGTGAGTTCTGTCGCAATTGTCCTCGACGAAGTG
AATGCATAGGTAAAAGTAAGCGTATAGCCAAGTTAATGACCATCAGCATAAATACCCCTGAGTTGTATGAATACAGCCAAAGAGCTAAAACCTCGGATTT
CGTTGAGGAATACCGAAAGCGAGCGAAGATCGAACCCAAGAATGCAGAACTAAAAAGATTCCACGGATTGGACCGGGCCAAAGGCTACGGTCTACGAAGT
ATCCGCATTCAGGCCAAACTAACAGCCCTATCGGTAAATTTAAAGCGGATAGCCAAGCTGGTATCCGCCTTAAAGGGTTTACATGTTCTCATTTTGAAGT
TATTATCTCCGTTAGTGGTTAACCGACCAGATTGTGACTGGGTAGCCGCCCAGGCGGCTTAAAAAGGATACTTTTTCAGTGGTTTCGGACCGTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1542 bp513 aa1211662+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLVETTVKQGSFYNVLYQMIPDNHILKRIDSAIDLSFVNELLADRYCKNFGRPAKEPEMMLRIQILKYLYNLSDEQLIQDLSVNLAYKWFVGLNPEDPLP
ETSLLTKFRTQRLKDISMDAIITEIVRQCIERGIIKGSNGIVIDTTHIEANTIKKVPERIMKQLARNIFKAMGQEEYEIPDYTQIEDHVAAKQIMKDYLE
DLIEQVSKESSEEVIQAVQEAQEILESDLFIEQKGIRSLVDKDARVGHKTKTQNFYGYKAEICQTTNGSLITSITIEPGSYVDGSNFKEHLEETQKSGLT
VTGVYGDKAYFRPDILNLIKENQATSYIPVSASAYKIDEKLFSYNKDSDQWFCVMGNETVKIKSKTRERNGKKQKYLDYTFEREFCRNCPRRSECIGKSK
RIAKLMTISINTPELYEYSQRAKTSDFVEEYRKRAKIEPKNAELKRFHGLDRAKGYGLRSIRIQAKLTALSVNLKRIAKLVSALKGLHVLILKLLSPLVV
NRPDCDWVAAQAA

 

Blast result :
Comments
ISSwo3 is 46% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Sims,D., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Boone,D.R., Brockman,F., Culley,D., Ferry,J., Gunsalus,R., McInerney,M.J., Morrison,M., Plugge,C., Rohlin,L., Scholten,J., Sieber,J., Stams,A.J.M. and Richardson,P. (2006) Direct submission GenBank.