ISPti1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ADEF01000007 | ND | Prevotella timonensis | Prevotella timonensis CRIS 5C-B1 |
DNA section
IS Length : 1765 bp
Ends
IR Length : 19/20
IRL : GAGGGCACTGAAAAAGTCCCCTAATTAAGATAAAGAGGATTAATATTCGA
IRR : GAGGGCACTGAAAAAGTTCCTATGTTTAAGTTGCTGAGCTTATTTTTGAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGAATACAG | CCCAG | GGCAGCGCCC | 5 |
DNA sequence
GAGGGCACTGAAAAAGTCCCCTAATTAAGATAAAGAGGATTAATATTCGATCTTTGAAATTATGTATCAAAAAGTTGCATATGTGCGGTATTTTTTGTAC
CTTTATACATAATTTGAGATTATGCTACAGCAACAACAAACCATATCATTCAGTGATTACTCAAGTTTATATGACTTGATTATCCCCAAAGACAACTTAC
TCCGACAGATTAAGAATCTAGTGGACTTTAGTTTTGTGTATCAAGAATTGAAAGATAAGTACTGTCATGACAATGGGCGGACGGCAGAGAGTCCTATCCG
TATGTTTAAGTATCTCCTTTTGAAAGTGATTTATAATATATCGGACGTTGATGTTGTAGAACGTACTCGTTATGATATGTCGTTTAAGTACTTCTTGGAT
TTGACTCCTGAGGAGACAAATTTAATCAATCCCAGTTCCTTGACCAAATTCCGCAGACTCCGCTTGAAGGATGTAGAGTTGTTGGATTTGCTCATCCAAA
AGACTGTTTCCATTGCCATAGAATTAGGTGTTCTCAAATCTAAAACCATTATCGTTGATGCAACCCATACGCTTGCACGCTCCAATCCTATTAGTGCAGC
AAAGAATTTGGAATATTATAGCAAGGCAGTCATCAAGGTCGTTCAATCTGTAGATAATAGTATTGAATTGCCCGAGCTTCCTAAAGAGAAGAAATACTCT
TCTATCATGCATGCAGCTAAGGCGCTTGTCTTGGCCGTGGATTCGAATACAGTAACAGCCAACATTCCTGTCGTGAAGGAACGTCTCAACATGTTGAAAG
AAACCATTTCTGACGCAGAGACACGAGGCGTAACTTCAAAGGATGAGGATGCTCGCACTGGACATAAGACAGCAAACTCTTCATTCTTTGGATATAAGAC
GCATATTGCTATGAGTGATGAAAGAATCATCACCGCAGCTACTGTCACTTCTGGCGAAAAAGGAGATGGACAGCAATTGCCGAAACTCGTCAAGAAGACG
GAAGATGCAGGAATGGAAGTTGATTTCATCGTTGCGGATACTGCATATTCCAGCAAGGAAAATCTCAAAATGGCAAAGGAAAACAACATGCATCTCTCGG
CTCGTTTGAGCTCTGTAATTGACGGTAATCGAACTAACAAGCTTCCTTTTGAATACAACAAGGATGCTGATCTATATGTCTGTCCAGCTGGGCATTTGGC
AAAACGAAAAGAGAAAAATAATCGAAAAGAAGGCAAGTGTCACAGAAACTCCAGCGTTACTTATTATTTTGATGTAGAGAAATGCAAAGTCTGTCCATTA
CGTGAAGGTTGCTACAAGCAAGGAGCCAAGACTAAAACATATATGGTCACCATCAAGTCGGATGAACAGTTAGAGCAAATCGAATATCAAAAAACCGAAG
AGTTCATAAGTCTTCAAAGAAAACGATACAAGATAGAAGCCAAGAACTCAGAACTTAAGAATGTCTTAGGATATGACAGAGCACTGTCATATGGTTTGTC
ATGCATGGAAATGCAGGGAGCTTTGACTATTTTCGCTGCAAACGTCAAAAGAATCCTCAAATTAAAACAAAGTGCATAATGAGGAAGTACTTTTCCCTAT
ATTTTGCCGAATATTAGCGTCACAAACGCTATAAAAATAGATTGTGAGCTTATACGTTGTCCCAAAAAGCATTTCACTCTTAAAAAATAAAATACTTCTT
GGACAAAAAGAAGAATTCAAAAATAAGCTCAGCAACTTAAACATAGGAACTTTTTCAGTGCCCTC
CTTTATACATAATTTGAGATTATGCTACAGCAACAACAAACCATATCATTCAGTGATTACTCAAGTTTATATGACTTGATTATCCCCAAAGACAACTTAC
TCCGACAGATTAAGAATCTAGTGGACTTTAGTTTTGTGTATCAAGAATTGAAAGATAAGTACTGTCATGACAATGGGCGGACGGCAGAGAGTCCTATCCG
TATGTTTAAGTATCTCCTTTTGAAAGTGATTTATAATATATCGGACGTTGATGTTGTAGAACGTACTCGTTATGATATGTCGTTTAAGTACTTCTTGGAT
TTGACTCCTGAGGAGACAAATTTAATCAATCCCAGTTCCTTGACCAAATTCCGCAGACTCCGCTTGAAGGATGTAGAGTTGTTGGATTTGCTCATCCAAA
AGACTGTTTCCATTGCCATAGAATTAGGTGTTCTCAAATCTAAAACCATTATCGTTGATGCAACCCATACGCTTGCACGCTCCAATCCTATTAGTGCAGC
AAAGAATTTGGAATATTATAGCAAGGCAGTCATCAAGGTCGTTCAATCTGTAGATAATAGTATTGAATTGCCCGAGCTTCCTAAAGAGAAGAAATACTCT
TCTATCATGCATGCAGCTAAGGCGCTTGTCTTGGCCGTGGATTCGAATACAGTAACAGCCAACATTCCTGTCGTGAAGGAACGTCTCAACATGTTGAAAG
AAACCATTTCTGACGCAGAGACACGAGGCGTAACTTCAAAGGATGAGGATGCTCGCACTGGACATAAGACAGCAAACTCTTCATTCTTTGGATATAAGAC
GCATATTGCTATGAGTGATGAAAGAATCATCACCGCAGCTACTGTCACTTCTGGCGAAAAAGGAGATGGACAGCAATTGCCGAAACTCGTCAAGAAGACG
GAAGATGCAGGAATGGAAGTTGATTTCATCGTTGCGGATACTGCATATTCCAGCAAGGAAAATCTCAAAATGGCAAAGGAAAACAACATGCATCTCTCGG
CTCGTTTGAGCTCTGTAATTGACGGTAATCGAACTAACAAGCTTCCTTTTGAATACAACAAGGATGCTGATCTATATGTCTGTCCAGCTGGGCATTTGGC
AAAACGAAAAGAGAAAAATAATCGAAAAGAAGGCAAGTGTCACAGAAACTCCAGCGTTACTTATTATTTTGATGTAGAGAAATGCAAAGTCTGTCCATTA
CGTGAAGGTTGCTACAAGCAAGGAGCCAAGACTAAAACATATATGGTCACCATCAAGTCGGATGAACAGTTAGAGCAAATCGAATATCAAAAAACCGAAG
AGTTCATAAGTCTTCAAAGAAAACGATACAAGATAGAAGCCAAGAACTCAGAACTTAAGAATGTCTTAGGATATGACAGAGCACTGTCATATGGTTTGTC
ATGCATGGAAATGCAGGGAGCTTTGACTATTTTCGCTGCAAACGTCAAAAGAATCCTCAAATTAAAACAAAGTGCATAATGAGGAAGTACTTTTCCCTAT
ATTTTGCCGAATATTAGCGTCACAAACGCTATAAAAATAGATTGTGAGCTTATACGTTGTCCCAAAAAGCATTTCACTCTTAAAAAATAAAATACTTCTT
GGACAAAAAGAAGAATTCAAAAATAAGCTCAGCAACTTAAACATAGGAACTTTTTCAGTGCCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1458 bp | 485 aa | 122 | 1579 | + | No |
Chemistry : DDE
ORF sequence :
MLQQQQTISFSDYSSLYDLIIPKDNLLRQIKNLVDFSFVYQELKDKYCHDNGRTAESPIRMFKYLLLKVIYNISDVDVVERTRYDMSFKYFLDLTPEETN
LINPSSLTKFRRLRLKDVELLDLLIQKTVSIAIELGVLKSKTIIVDATHTLARSNPISAAKNLEYYSKAVIKVVQSVDNSIELPELPKEKKYSSIMHAAK
ALVLAVDSNTVTANIPVVKERLNMLKETISDAETRGVTSKDEDARTGHKTANSSFFGYKTHIAMSDERIITAATVTSGEKGDGQQLPKLVKKTEDAGMEV
DFIVADTAYSSKENLKMAKENNMHLSARLSSVIDGNRTNKLPFEYNKDADLYVCPAGHLAKRKEKNNRKEGKCHRNSSVTYYFDVEKCKVCPLREGCYKQ
GAKTKTYMVTIKSDEQLEQIEYQKTEEFISLQRKRYKIEAKNSELKNVLGYDRALSYGLSCMEMQGALTIFAANVKRILKLKQSA
LINPSSLTKFRRLRLKDVELLDLLIQKTVSIAIELGVLKSKTIIVDATHTLARSNPISAAKNLEYYSKAVIKVVQSVDNSIELPELPKEKKYSSIMHAAK
ALVLAVDSNTVTANIPVVKERLNMLKETISDAETRGVTSKDEDARTGHKTANSSFFGYKTHIAMSDERIITAATVTSGEKGDGQQLPKLVKKTEDAGMEV
DFIVADTAYSSKENLKMAKENNMHLSARLSSVIDGNRTNKLPFEYNKDADLYVCPAGHLAKRKEKNNRKEGKCHRNSSVTYYFDVEKCKVCPLREGCYKQ
GAKTKTYMVTIKSDEQLEQIEYQKTEEFISLQRKRYKIEAKNSELKNVLGYDRALSYGLSCMEMQGALTIFAANVKRILKLKQSA
Blast result :
Comments
ISPti1 is 41% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Durkin,A.S., Torralba,M., Methe,B., Sutton,G., Strausberg,R.L. and Nelson,K.E. (2009) Direct submission GenBank.
2] Durkin,A.S., Torralba,M., Methe,B., Sutton,G., Strausberg,R.L. and Nelson,K.E. (2009) Direct submission GenBank.