ISPti1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ADEF01000007 ND Prevotella timonensis
Prevotella timonensis CRIS 5C-B1
DNA section
IS Length : 1765 bp

Ends


IR Length : 19/20

IRL : GAGGGCACTGAAAAAGTCCCCTAATTAAGATAAAGAGGATTAATATTCGA
IRR : GAGGGCACTGAAAAAGTTCCTATGTTTAAGTTGCTGAGCTTATTTTTGAA

Insertion site


Left flankDirect repeatRight flankDR Length
AGGAATACAGCCCAGGGCAGCGCCC5

DNA sequence

GAGGGCACTGAAAAAGTCCCCTAATTAAGATAAAGAGGATTAATATTCGATCTTTGAAATTATGTATCAAAAAGTTGCATATGTGCGGTATTTTTTGTAC
CTTTATACATAATTTGAGATTATGCTACAGCAACAACAAACCATATCATTCAGTGATTACTCAAGTTTATATGACTTGATTATCCCCAAAGACAACTTAC
TCCGACAGATTAAGAATCTAGTGGACTTTAGTTTTGTGTATCAAGAATTGAAAGATAAGTACTGTCATGACAATGGGCGGACGGCAGAGAGTCCTATCCG
TATGTTTAAGTATCTCCTTTTGAAAGTGATTTATAATATATCGGACGTTGATGTTGTAGAACGTACTCGTTATGATATGTCGTTTAAGTACTTCTTGGAT
TTGACTCCTGAGGAGACAAATTTAATCAATCCCAGTTCCTTGACCAAATTCCGCAGACTCCGCTTGAAGGATGTAGAGTTGTTGGATTTGCTCATCCAAA
AGACTGTTTCCATTGCCATAGAATTAGGTGTTCTCAAATCTAAAACCATTATCGTTGATGCAACCCATACGCTTGCACGCTCCAATCCTATTAGTGCAGC
AAAGAATTTGGAATATTATAGCAAGGCAGTCATCAAGGTCGTTCAATCTGTAGATAATAGTATTGAATTGCCCGAGCTTCCTAAAGAGAAGAAATACTCT
TCTATCATGCATGCAGCTAAGGCGCTTGTCTTGGCCGTGGATTCGAATACAGTAACAGCCAACATTCCTGTCGTGAAGGAACGTCTCAACATGTTGAAAG
AAACCATTTCTGACGCAGAGACACGAGGCGTAACTTCAAAGGATGAGGATGCTCGCACTGGACATAAGACAGCAAACTCTTCATTCTTTGGATATAAGAC
GCATATTGCTATGAGTGATGAAAGAATCATCACCGCAGCTACTGTCACTTCTGGCGAAAAAGGAGATGGACAGCAATTGCCGAAACTCGTCAAGAAGACG
GAAGATGCAGGAATGGAAGTTGATTTCATCGTTGCGGATACTGCATATTCCAGCAAGGAAAATCTCAAAATGGCAAAGGAAAACAACATGCATCTCTCGG
CTCGTTTGAGCTCTGTAATTGACGGTAATCGAACTAACAAGCTTCCTTTTGAATACAACAAGGATGCTGATCTATATGTCTGTCCAGCTGGGCATTTGGC
AAAACGAAAAGAGAAAAATAATCGAAAAGAAGGCAAGTGTCACAGAAACTCCAGCGTTACTTATTATTTTGATGTAGAGAAATGCAAAGTCTGTCCATTA
CGTGAAGGTTGCTACAAGCAAGGAGCCAAGACTAAAACATATATGGTCACCATCAAGTCGGATGAACAGTTAGAGCAAATCGAATATCAAAAAACCGAAG
AGTTCATAAGTCTTCAAAGAAAACGATACAAGATAGAAGCCAAGAACTCAGAACTTAAGAATGTCTTAGGATATGACAGAGCACTGTCATATGGTTTGTC
ATGCATGGAAATGCAGGGAGCTTTGACTATTTTCGCTGCAAACGTCAAAAGAATCCTCAAATTAAAACAAAGTGCATAATGAGGAAGTACTTTTCCCTAT
ATTTTGCCGAATATTAGCGTCACAAACGCTATAAAAATAGATTGTGAGCTTATACGTTGTCCCAAAAAGCATTTCACTCTTAAAAAATAAAATACTTCTT
GGACAAAAAGAAGAATTCAAAAATAAGCTCAGCAACTTAAACATAGGAACTTTTTCAGTGCCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1458 bp485 aa1221579+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLQQQQTISFSDYSSLYDLIIPKDNLLRQIKNLVDFSFVYQELKDKYCHDNGRTAESPIRMFKYLLLKVIYNISDVDVVERTRYDMSFKYFLDLTPEETN
LINPSSLTKFRRLRLKDVELLDLLIQKTVSIAIELGVLKSKTIIVDATHTLARSNPISAAKNLEYYSKAVIKVVQSVDNSIELPELPKEKKYSSIMHAAK
ALVLAVDSNTVTANIPVVKERLNMLKETISDAETRGVTSKDEDARTGHKTANSSFFGYKTHIAMSDERIITAATVTSGEKGDGQQLPKLVKKTEDAGMEV
DFIVADTAYSSKENLKMAKENNMHLSARLSSVIDGNRTNKLPFEYNKDADLYVCPAGHLAKRKEKNNRKEGKCHRNSSVTYYFDVEKCKVCPLREGCYKQ
GAKTKTYMVTIKSDEQLEQIEYQKTEEFISLQRKRYKIEAKNSELKNVLGYDRALSYGLSCMEMQGALTIFAANVKRILKLKQSA

 

Blast result :
Comments
ISPti1 is 41% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Durkin,A.S., Torralba,M., Methe,B., Sutton,G., Strausberg,R.L. and Nelson,K.E. (2009) Direct submission GenBank.