ISBsp4

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABCF01000007 ND Bacillus sp.
Bacillus sp. SG-1
DNA section
IS Length : 1878 bp

Ends


IR Length : 14

IRL : GAGGCCACTGAAAAAGTCCAAAAAAATAGGAAAAGGCAGAGTCGTTCACT
IRR : GACGGCACTGAAAATCTTCCGATTTCTAGAACATAGTGTTGATTAATAAA

Insertion site


Left flankDirect repeatRight flankDR Length
AAAACTCCACTAAATGAGCTGGAGTTTT8
AAACAGCCTCCACAAAAGGGAGGCTGTC8
AAACAGGCAGGCTGCAGTCTGCCTGTTT8

DNA sequence

GAGGCCACTGAAAAAGTCCAAAAAAATAGGAAAAGGCAGAGTCGTTCACTAAAAAGAGCAACCCTGCCTTTTTTACTACCGATTTTACGAAAAAAGTGTT
GATTTCCGTTCCAGGTGCACGACTCCGCGGGGCGGGCGTTGAGCCTCCTCGGCTTCGCCTGCGGGGTCTCACCTGTCCCGCTAGTCCCGCAGGAGGTCGC
GCACCTTCCACTCCAATCAACGTTGAGAAAAAAGAATACTATCCGCTAATAAAGCCTTACTTTATAATAGAATCATTAATATGAGTGGGTGGCTACCAAT
GATACAACAACAACAATCAATAACGTTTAGTAAATATATGGATCTTTATGATATTGTCGTTCCTCAGGACAATATGTTACGGAGAATAGTCGATTTAATC
GACTTCACCTTCATTTTTGAAGAGTTAAAGGATAAATATTGTCATGATAATGGACGGAATGCGATTGACCCTATCCGGATGTTCAAATACTTATTTTTGA
AAACCATTCACGATGTATCAGATGTTGATATTGTTGAACGTTCGAAATATGATATGTCTTTCAAGTATTTCTTAAATATGGCTCCAGAAGAAGCGGTTAT
TGATTCAAGTTCATTGACTAAATTTCGTAAACTTAGGTTAAAGGACATGAACTTTTTAGACATGCTTGTCAACAAGACGGTGGAGATTGCCATAGAGAAA
GAAATCATAAAAAGTAAGTCCATTATTGTCGATGCCACCCATACTAAGGCCCGCTATAATCAAATGAAACCAAAGGAAATCCTCATGGAGCGCTCCAAGA
ATCTTCGGAAATCGATTTATAAGGTTAACGACGGTATGAAGGATAAATTCCCTGTGAAGCCCAACAATGATGTGTTGGAAGATGAGATCGCCTATTCACA
GGAGCTCATTGAGGTAATAGAAAAGGAAGAAACCCTTTTAGAATATCCCAAAGTTAAGGAACAGCTTAATCTTCTGAAAGAAACGGTCGCCGATGATATT
GAGCAGCTACAGTCCATGAACGATCAGGATGCCAAAGTGGGACACAAAACAGCAGATTCCTCTTTCTTCGGCTACAAAACCCATCTTGCGATGAGTGAAG
AACGTATTATTACAGCCGCAACCATCACCACCGGAGAAAAAAGTGACGGGAAAGAACTGCAGACACTTATTGAGAAAAGTAAAACTGCGGGCATGAAAAT
TGAGACGGTTATTGGGGATGCGGCATATTCCGAGAAAGACAACATTGAATATAGCAAGGGAAATGGAATCAAATTGGTTTCAAGATTGAATCCTCTAATC
ACTCAGGGTGCTCGAAAAAAAGAGGATGAATTCGAGTTCAATAAGGATGCGGGTATGTATGTTTGCAAGGCAGGACATATGGCTATACGGAAAGCTAGAC
AAGGTAAAAAAGGATTAGGTAGAAACCAGGTTGACACCTACTATTTTGACGTGGATAAATGTAAGAGATGCCCTCTCAGAGAGGGGTGCTACAAGGGAGG
AGCCAAAAGTAAGACGTATTCCGTTTCCATAAAGTCCGACCAGCATTCCGACCAGGCAAAATTCCAGGAAAGCGATTTCTTTAAGGAAAAAGCAAAAGAA
CGTTATAAAATAGAAGCAAAAAATAGTGAGTTAAAACACAGACACGGGTATAATGTGGCAGAATCCTCGGGTCTAATTGGCATGGAATTACAAGGTGCGA
TGGCAATATTTGCGGTAAACATTAAAAGGATTCTAAAGCTAATGGGATAGAAAGAGCATTATGGACGAAGCTTACCAAGAAAAAAGCCGACCCTCCTTCC
TTTTTTAGGGAGTAGAGTCGGCTTTTTCTTTATTAATCAACACTATGTTCTAGAAATCGGAAGATTTTCAGTGCCGTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1413 bp470 aa3381750+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDLYDIVVPQDNMLRRIVDLIDFTFIFEELKDKYCHDNGRNAIDPIRMFKYLFLKTIHDVSDVDIVERSKYDMSFKYFLNMAPEEAVIDSSSLTKFRKLR
LKDMNFLDMLVNKTVEIAIEKEIIKSKSIIVDATHTKARYNQMKPKEILMERSKNLRKSIYKVNDGMKDKFPVKPNNDVLEDEIAYSQELIEVIEKEETL
LEYPKVKEQLNLLKETVADDIEQLQSMNDQDAKVGHKTADSSFFGYKTHLAMSEERIITAATITTGEKSDGKELQTLIEKSKTAGMKIETVIGDAAYSEK
DNIEYSKGNGIKLVSRLNPLITQGARKKEDEFEFNKDAGMYVCKAGHMAIRKARQGKKGLGRNQVDTYYFDVDKCKRCPLREGCYKGGAKSKTYSVSIKS
DQHSDQAKFQESDFFKEKAKERYKIEAKNSELKHRHGYNVAESSGLIGMELQGAMAIFAVNIKRILKLMG

 

Blast result :
Comments
ISBsp4 is 43% aa similar to ISPlu14.
References
1] ISfinder annotation (2010)
2] Tebo,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.