ISBcy1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009674 ND Bacillus cytotoxicus
Bacillus cytotoxicus NVH 391-98
DNA section
IS Length : 1685 bp

Ends


IR Length : 15

IRL : GAGGCCACTGAAAAAGTCCTCCCAGTTTAAAAAGCGAAAGCTTTCTCGAT
IRR : GAGGCCACTGAAAAACTTACGTTTTTCGGTTTATAAACCGGATACAAAAC

Insertion site


Left flankDirect repeatRight flankDR Length
AAAGAAGCTGGATATTCTCCCAGCTTTT8
TCGTTTATAACTTCATCTAC0

DNA sequence

GAGGCCACTGAAAAAGTCCTCCCAGTTTAAAAAGCGAAAGCTTTCTCGATATAATCGAGGAAGCTTTCGCTTTTTTCATGTATAATGATTGTACTAATTC
TAGGTGGTGTCTCGGATGATTTCTAATCAACAATCTCTTAACCTCAGTCCATTTATGGCGATTTACGATATCGTTGTACCAAAGGATAATATGCTTCGTC
AATTGAATGAACTGGTAGACTTTTCTTTTGTTTTAGAAGAACTACAAGATAAATATTGTCTCGATAACGGTCGCAATGCAGTGCCGCCTGTTCGTATGTT
TAAATATTTATTACTAAAATCTATTTTTGATTTATCCGATGTAGATGTTGTGGAACGCTCAAAATACGATATGTCCTTTAAATATTTTTTAGATATGGCA
CCAGAAGATATGGTCATTGACCCTAGTTCATTAACGAAGTTCCGCAAGCTTCGTCTGACAGATGTAGGGTTACTTGACATGCTCATTCAAAAAACAGTGG
AAATTGCACTCGAAAAAAACTTGATTAAAAATAAATCTATTATTGTTGATGCCACGCATACAAAAGCACGCTTCAATCAAAAATCGCCGAAAGAATTTTT
AATGGAGAAATCCAAATTACTCCGCAAAGCTGTTTATCAAGTTGACGAAGGAATGAAGGAAAAGTTCCCACCAAAAACAATGACAGATGACTTAAGTGAC
GAACTTGAATATTGTCAAAAAGTAATTGAAACAGTAGAAAAAGAGGAAATCATTCGTGAATATCCAAATGTGAAAGAGAAACTGAATTATTTAAAAGAAA
TCGTAGAAGATCACCAAGAACACCTCCAATTTTCGCAAGATCCTGATGCGCGAATTGGACATAAAACAGCGGATTCTTCTTTCTTTGGTTACAAAACACA
TATTGCGATGAATGAAGAACGCATCATTACAGCTGCGGTGATTACAACGGGTGAAAAAAGCGATGGAAAATACCTTCAAATATTGATTGAAAAAAGTCGT
GAAACAGGAATGGAAATTGATACAGTTATTGGAGATACTGCTTATTCTGAGAAAAATAATATTCAATATGCCAACCAAAATCAATTACAATTAGTATCGA
AATTAAACCCTATTGTGACACAAGGGCCACGTAAAAAAGAAGATGAATTTGAGTTTAATAAAGATGCGGGTATGTATGTCTGTAAAGCTGGACATATGGC
TGTTCGTAGAGCACGTACGGGGAAAAAGGGAACAAACAATAGTCAAAGTCATACCTACTATTTTGATATTGAAAAATGCAAAGTATGTCCATTCAAAAGT
GGGTGTTACAAGGAAGGCGCTAAAAGTAAAACATATTCTGTGACAATTAAATCCACTGAACATAAGGAACAACAAGCATTTCAAGAAAGTGCATATTTTA
AAGAAAAGGGGAAAGAGCGTTATAAAATTGAAGCGAAAAGTAGTGAACTTAAGCATAGACACGGGTATGATGTGGCATCTTCCTCGGGTCTGATTGGTAT
GCAACTGCAAGGTGCAATGGCTATATTCGCTGTCAATTTAAAACGAATCCTAACCTTGATGAAAGAAACAAAGTAAAAAAGGATAAAGAGAAAGACGACT
TTTCATTCAAAATTGAATGAAAAGTCGCCTTTCTTGTTTTGTATCCGGTTTATAAACCGAAAAACGTAAGTTTTTCAGTGGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1461 bp486 aa1161576+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISNQQSLNLSPFMAIYDIVVPKDNMLRQLNELVDFSFVLEELQDKYCLDNGRNAVPPVRMFKYLLLKSIFDLSDVDVVERSKYDMSFKYFLDMAPEDMV
IDPSSLTKFRKLRLTDVGLLDMLIQKTVEIALEKNLIKNKSIIVDATHTKARFNQKSPKEFLMEKSKLLRKAVYQVDEGMKEKFPPKTMTDDLSDELEYC
QKVIETVEKEEIIREYPNVKEKLNYLKEIVEDHQEHLQFSQDPDARIGHKTADSSFFGYKTHIAMNEERIITAAVITTGEKSDGKYLQILIEKSRETGME
IDTVIGDTAYSEKNNIQYANQNQLQLVSKLNPIVTQGPRKKEDEFEFNKDAGMYVCKAGHMAVRRARTGKKGTNNSQSHTYYFDIEKCKVCPFKSGCYKE
GAKSKTYSVTIKSTEHKEQQAFQESAYFKEKGKERYKIEAKSSELKHRHGYDVASSSGLIGMQLQGAMAIFAVNLKRILTLMKETK

 

Blast result :
Comments
ISBcy1 is 44% aa similar to ISLlo2.
References
1] ISfinder annotation (2010)
2] Lapidus,A., Goltsman,E., Auger,S., Galleron,N., Segurens,B., Dossat,C., Land,M.L., Broussolle,V., Brillard,J., Guinebretiere,M.H., Sanchis,V., Nguen-The,C., Lereclus,D., Richardson,P., Wincker,P., Weissenbach,J., Ehrlich,S.D. and Sorokin,A. (2008) Chem. Biol. Interact. 171 (2), 236-249