ISBcy1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009674 | ND | Bacillus cytotoxicus | Bacillus cytotoxicus NVH 391-98 |
DNA section
IS Length : 1685 bp
Ends
IR Length : 15
IRL : GAGGCCACTGAAAAAGTCCTCCCAGTTTAAAAAGCGAAAGCTTTCTCGAT
IRR : GAGGCCACTGAAAAACTTACGTTTTTCGGTTTATAAACCGGATACAAAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAGAAGCTG | GATATTCT | CCCAGCTTTT | 8 |
TCGTTTATAA | CTTCATCTAC | 0 |
DNA sequence
GAGGCCACTGAAAAAGTCCTCCCAGTTTAAAAAGCGAAAGCTTTCTCGATATAATCGAGGAAGCTTTCGCTTTTTTCATGTATAATGATTGTACTAATTC
TAGGTGGTGTCTCGGATGATTTCTAATCAACAATCTCTTAACCTCAGTCCATTTATGGCGATTTACGATATCGTTGTACCAAAGGATAATATGCTTCGTC
AATTGAATGAACTGGTAGACTTTTCTTTTGTTTTAGAAGAACTACAAGATAAATATTGTCTCGATAACGGTCGCAATGCAGTGCCGCCTGTTCGTATGTT
TAAATATTTATTACTAAAATCTATTTTTGATTTATCCGATGTAGATGTTGTGGAACGCTCAAAATACGATATGTCCTTTAAATATTTTTTAGATATGGCA
CCAGAAGATATGGTCATTGACCCTAGTTCATTAACGAAGTTCCGCAAGCTTCGTCTGACAGATGTAGGGTTACTTGACATGCTCATTCAAAAAACAGTGG
AAATTGCACTCGAAAAAAACTTGATTAAAAATAAATCTATTATTGTTGATGCCACGCATACAAAAGCACGCTTCAATCAAAAATCGCCGAAAGAATTTTT
AATGGAGAAATCCAAATTACTCCGCAAAGCTGTTTATCAAGTTGACGAAGGAATGAAGGAAAAGTTCCCACCAAAAACAATGACAGATGACTTAAGTGAC
GAACTTGAATATTGTCAAAAAGTAATTGAAACAGTAGAAAAAGAGGAAATCATTCGTGAATATCCAAATGTGAAAGAGAAACTGAATTATTTAAAAGAAA
TCGTAGAAGATCACCAAGAACACCTCCAATTTTCGCAAGATCCTGATGCGCGAATTGGACATAAAACAGCGGATTCTTCTTTCTTTGGTTACAAAACACA
TATTGCGATGAATGAAGAACGCATCATTACAGCTGCGGTGATTACAACGGGTGAAAAAAGCGATGGAAAATACCTTCAAATATTGATTGAAAAAAGTCGT
GAAACAGGAATGGAAATTGATACAGTTATTGGAGATACTGCTTATTCTGAGAAAAATAATATTCAATATGCCAACCAAAATCAATTACAATTAGTATCGA
AATTAAACCCTATTGTGACACAAGGGCCACGTAAAAAAGAAGATGAATTTGAGTTTAATAAAGATGCGGGTATGTATGTCTGTAAAGCTGGACATATGGC
TGTTCGTAGAGCACGTACGGGGAAAAAGGGAACAAACAATAGTCAAAGTCATACCTACTATTTTGATATTGAAAAATGCAAAGTATGTCCATTCAAAAGT
GGGTGTTACAAGGAAGGCGCTAAAAGTAAAACATATTCTGTGACAATTAAATCCACTGAACATAAGGAACAACAAGCATTTCAAGAAAGTGCATATTTTA
AAGAAAAGGGGAAAGAGCGTTATAAAATTGAAGCGAAAAGTAGTGAACTTAAGCATAGACACGGGTATGATGTGGCATCTTCCTCGGGTCTGATTGGTAT
GCAACTGCAAGGTGCAATGGCTATATTCGCTGTCAATTTAAAACGAATCCTAACCTTGATGAAAGAAACAAAGTAAAAAAGGATAAAGAGAAAGACGACT
TTTCATTCAAAATTGAATGAAAAGTCGCCTTTCTTGTTTTGTATCCGGTTTATAAACCGAAAAACGTAAGTTTTTCAGTGGCCTC
TAGGTGGTGTCTCGGATGATTTCTAATCAACAATCTCTTAACCTCAGTCCATTTATGGCGATTTACGATATCGTTGTACCAAAGGATAATATGCTTCGTC
AATTGAATGAACTGGTAGACTTTTCTTTTGTTTTAGAAGAACTACAAGATAAATATTGTCTCGATAACGGTCGCAATGCAGTGCCGCCTGTTCGTATGTT
TAAATATTTATTACTAAAATCTATTTTTGATTTATCCGATGTAGATGTTGTGGAACGCTCAAAATACGATATGTCCTTTAAATATTTTTTAGATATGGCA
CCAGAAGATATGGTCATTGACCCTAGTTCATTAACGAAGTTCCGCAAGCTTCGTCTGACAGATGTAGGGTTACTTGACATGCTCATTCAAAAAACAGTGG
AAATTGCACTCGAAAAAAACTTGATTAAAAATAAATCTATTATTGTTGATGCCACGCATACAAAAGCACGCTTCAATCAAAAATCGCCGAAAGAATTTTT
AATGGAGAAATCCAAATTACTCCGCAAAGCTGTTTATCAAGTTGACGAAGGAATGAAGGAAAAGTTCCCACCAAAAACAATGACAGATGACTTAAGTGAC
GAACTTGAATATTGTCAAAAAGTAATTGAAACAGTAGAAAAAGAGGAAATCATTCGTGAATATCCAAATGTGAAAGAGAAACTGAATTATTTAAAAGAAA
TCGTAGAAGATCACCAAGAACACCTCCAATTTTCGCAAGATCCTGATGCGCGAATTGGACATAAAACAGCGGATTCTTCTTTCTTTGGTTACAAAACACA
TATTGCGATGAATGAAGAACGCATCATTACAGCTGCGGTGATTACAACGGGTGAAAAAAGCGATGGAAAATACCTTCAAATATTGATTGAAAAAAGTCGT
GAAACAGGAATGGAAATTGATACAGTTATTGGAGATACTGCTTATTCTGAGAAAAATAATATTCAATATGCCAACCAAAATCAATTACAATTAGTATCGA
AATTAAACCCTATTGTGACACAAGGGCCACGTAAAAAAGAAGATGAATTTGAGTTTAATAAAGATGCGGGTATGTATGTCTGTAAAGCTGGACATATGGC
TGTTCGTAGAGCACGTACGGGGAAAAAGGGAACAAACAATAGTCAAAGTCATACCTACTATTTTGATATTGAAAAATGCAAAGTATGTCCATTCAAAAGT
GGGTGTTACAAGGAAGGCGCTAAAAGTAAAACATATTCTGTGACAATTAAATCCACTGAACATAAGGAACAACAAGCATTTCAAGAAAGTGCATATTTTA
AAGAAAAGGGGAAAGAGCGTTATAAAATTGAAGCGAAAAGTAGTGAACTTAAGCATAGACACGGGTATGATGTGGCATCTTCCTCGGGTCTGATTGGTAT
GCAACTGCAAGGTGCAATGGCTATATTCGCTGTCAATTTAAAACGAATCCTAACCTTGATGAAAGAAACAAAGTAAAAAAGGATAAAGAGAAAGACGACT
TTTCATTCAAAATTGAATGAAAAGTCGCCTTTCTTGTTTTGTATCCGGTTTATAAACCGAAAAACGTAAGTTTTTCAGTGGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1461 bp | 486 aa | 116 | 1576 | + | No |
Chemistry : DDE
ORF sequence :
MISNQQSLNLSPFMAIYDIVVPKDNMLRQLNELVDFSFVLEELQDKYCLDNGRNAVPPVRMFKYLLLKSIFDLSDVDVVERSKYDMSFKYFLDMAPEDMV
IDPSSLTKFRKLRLTDVGLLDMLIQKTVEIALEKNLIKNKSIIVDATHTKARFNQKSPKEFLMEKSKLLRKAVYQVDEGMKEKFPPKTMTDDLSDELEYC
QKVIETVEKEEIIREYPNVKEKLNYLKEIVEDHQEHLQFSQDPDARIGHKTADSSFFGYKTHIAMNEERIITAAVITTGEKSDGKYLQILIEKSRETGME
IDTVIGDTAYSEKNNIQYANQNQLQLVSKLNPIVTQGPRKKEDEFEFNKDAGMYVCKAGHMAVRRARTGKKGTNNSQSHTYYFDIEKCKVCPFKSGCYKE
GAKSKTYSVTIKSTEHKEQQAFQESAYFKEKGKERYKIEAKSSELKHRHGYDVASSSGLIGMQLQGAMAIFAVNLKRILTLMKETK
IDPSSLTKFRKLRLTDVGLLDMLIQKTVEIALEKNLIKNKSIIVDATHTKARFNQKSPKEFLMEKSKLLRKAVYQVDEGMKEKFPPKTMTDDLSDELEYC
QKVIETVEKEEIIREYPNVKEKLNYLKEIVEDHQEHLQFSQDPDARIGHKTADSSFFGYKTHIAMNEERIITAAVITTGEKSDGKYLQILIEKSRETGME
IDTVIGDTAYSEKNNIQYANQNQLQLVSKLNPIVTQGPRKKEDEFEFNKDAGMYVCKAGHMAVRRARTGKKGTNNSQSHTYYFDIEKCKVCPFKSGCYKE
GAKSKTYSVTIKSTEHKEQQAFQESAYFKEKGKERYKIEAKSSELKHRHGYDVASSSGLIGMQLQGAMAIFAVNLKRILTLMKETK
Blast result :
Comments
ISBcy1 is 44% aa similar to ISLlo2.
References
1] ISfinder annotation (2010)
2] Lapidus,A., Goltsman,E., Auger,S., Galleron,N., Segurens,B., Dossat,C., Land,M.L., Broussolle,V., Brillard,J., Guinebretiere,M.H., Sanchis,V., Nguen-The,C., Lereclus,D., Richardson,P., Wincker,P., Weissenbach,J., Ehrlich,S.D. and Sorokin,A. (2008) Chem. Biol. Interact. 171 (2), 236-249
2] Lapidus,A., Goltsman,E., Auger,S., Galleron,N., Segurens,B., Dossat,C., Land,M.L., Broussolle,V., Brillard,J., Guinebretiere,M.H., Sanchis,V., Nguen-The,C., Lereclus,D., Richardson,P., Wincker,P., Weissenbach,J., Ehrlich,S.D. and Sorokin,A. (2008) Chem. Biol. Interact. 171 (2), 236-249