ISCaa6

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010830 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 989 bp

Ends


IR Length : 20

IRL : AGACCTACTGCGAAAGAGGTTGATAAAGAGAGTAGAAAAGGTTAAAATGT
IRR : AGACCTACTGCGAAAGAGGTAAAATAGAGTAGAATTTTAAATAAAATAAA

Insertion site


Left flankDirect repeatRight flankDR Length
ACGATAAGATATTAGAACTGAAT3
GGTGTTTAAGATTATGTCAGAAG3
TTTATTTATCAATGTAGGGTGTA3
TATCAGAAAGAATTGAAGCAAGA3
CTCTAACTTCAGTAAAATCCATG3
CTTGTTGCTCAATCAAATTTTGT3
GCTATTAAGTACTATAAAATTTC3
GTTAGAGATCAATTGTTTGGTCC3
GGCTAGAAACATTATTTTAGAGC3
GGTGTTTAAGATTCTTTGGCCAA3
ATTGCTTATCAATGCTGAGTTGT3

DNA sequence

AGACCTACTGCGAAAGAGGTTGATAAAGAGAGTAGAAAAGGTTAAAATGTAATCCTTGTTATATACTAAAAGGAATAAGTATGCATTTAACCTACACCAG
AATAAGCAAGTACCCATACAATTTTAGAAGAATAACTGGATTGAGGCTAGAAACATTTGATAAATTAGTTCAAAAAGTAAGGCCTGTCTTTGAAAAGTTA
GAAGCGAGCAAGCTGCGCCATGGACGTCGGAGCCATTTACCTACCTTAGAGGATAAACTGCTCTGTGTTTTGGTATATTACCGCACCTATATTAGCCATG
TATTTCTAGGCTACTTATTTAACTTACACAACGCTAACATATGCCGCTTGCTAAGAAAAATGGAGCCCTTACTAGCTAAGAAAATTAGCATTAAAAAAGA
TAGGACTTTAACCCCAGACAAGGTATTGCGCATATTAGCAGATGTAAGTGAACAGCCTACGCAAAGACCTAGTAAAAAGCAAAAGAAATCTTATTCAGGC
AAGAAAAAGAGACATACCATAAAAACAGAGATAGTCATCAGAGAAGATGGGAGAATACTGTCTGTCTCCAAATCACATAAAGGAAGAGTGCATGACTTTA
AAATCCGTAAAGGAGAAAAACCCTTACCTAAAGAAAGCTTAAAGCTGGCAGATAGTGGTTATCAAGGCTGGCAAAAGCTACAGAGCAATGTAATGATACC
CTACAAAAAGAGCCGTAAGCGGCCATTAACCAAAGAGCAAAAAGACCATAACAGAAAGCTAGCCTCCATACGCATGAAGGTAGAGCATAAGATAAGAGAG
ATCAAGGTATTTAAAATTATGGCAGAGGTATACAGGAATTTTCAGAAAAAATATAACCTTCGCTTTAACATTATATCCGGGCTTATAAACTTCAAGTACG
CTTTTTAACAAATAATGTCGCTAGAGCCAAGCTCCCTTCTTTATTTTATTTAAAATTCTACTCTATTTTACCTCTTTCGCAGTAGGTCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
828 bp275 aa81908+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHLTYTRISKYPYNFRRITGLRLETFDKLVQKVRPVFEKLEASKLRHGRRSHLPTLEDKLLCVLVYYRTYISHVFLGYLFNLHNANICRLLRKMEPLLAK
KISIKKDRTLTPDKVLRILADVSEQPTQRPSKKQKKSYSGKKKRHTIKTEIVIREDGRILSVSKSHKGRVHDFKIRKGEKPLPKESLKLADSGYQGWQKL
QSNVMIPYKKSRKRPLTKEQKDHNRKLASIRMKVEHKIREIKVFKIMAEVYRNFQKKYNLRFNIISGLINFKYAF

 

Blast result :
Comments
ISCaa6 is 58% aa similar to ISOt6.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.