ISCaa6
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010830 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 989 bp
Ends
IR Length : 20
IRL : AGACCTACTGCGAAAGAGGTTGATAAAGAGAGTAGAAAAGGTTAAAATGT
IRR : AGACCTACTGCGAAAGAGGTAAAATAGAGTAGAATTTTAAATAAAATAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGATAAGAT | ATT | AGAACTGAAT | 3 |
GGTGTTTAAG | ATT | ATGTCAGAAG | 3 |
TTTATTTATC | AAT | GTAGGGTGTA | 3 |
TATCAGAAAG | AAT | TGAAGCAAGA | 3 |
CTCTAACTTC | AGT | AAAATCCATG | 3 |
CTTGTTGCTC | AAT | CAAATTTTGT | 3 |
GCTATTAAGT | ACT | ATAAAATTTC | 3 |
GTTAGAGATC | AAT | TGTTTGGTCC | 3 |
GGCTAGAAAC | ATT | ATTTTAGAGC | 3 |
GGTGTTTAAG | ATT | CTTTGGCCAA | 3 |
ATTGCTTATC | AAT | GCTGAGTTGT | 3 |
DNA sequence
AGACCTACTGCGAAAGAGGTTGATAAAGAGAGTAGAAAAGGTTAAAATGTAATCCTTGTTATATACTAAAAGGAATAAGTATGCATTTAACCTACACCAG
AATAAGCAAGTACCCATACAATTTTAGAAGAATAACTGGATTGAGGCTAGAAACATTTGATAAATTAGTTCAAAAAGTAAGGCCTGTCTTTGAAAAGTTA
GAAGCGAGCAAGCTGCGCCATGGACGTCGGAGCCATTTACCTACCTTAGAGGATAAACTGCTCTGTGTTTTGGTATATTACCGCACCTATATTAGCCATG
TATTTCTAGGCTACTTATTTAACTTACACAACGCTAACATATGCCGCTTGCTAAGAAAAATGGAGCCCTTACTAGCTAAGAAAATTAGCATTAAAAAAGA
TAGGACTTTAACCCCAGACAAGGTATTGCGCATATTAGCAGATGTAAGTGAACAGCCTACGCAAAGACCTAGTAAAAAGCAAAAGAAATCTTATTCAGGC
AAGAAAAAGAGACATACCATAAAAACAGAGATAGTCATCAGAGAAGATGGGAGAATACTGTCTGTCTCCAAATCACATAAAGGAAGAGTGCATGACTTTA
AAATCCGTAAAGGAGAAAAACCCTTACCTAAAGAAAGCTTAAAGCTGGCAGATAGTGGTTATCAAGGCTGGCAAAAGCTACAGAGCAATGTAATGATACC
CTACAAAAAGAGCCGTAAGCGGCCATTAACCAAAGAGCAAAAAGACCATAACAGAAAGCTAGCCTCCATACGCATGAAGGTAGAGCATAAGATAAGAGAG
ATCAAGGTATTTAAAATTATGGCAGAGGTATACAGGAATTTTCAGAAAAAATATAACCTTCGCTTTAACATTATATCCGGGCTTATAAACTTCAAGTACG
CTTTTTAACAAATAATGTCGCTAGAGCCAAGCTCCCTTCTTTATTTTATTTAAAATTCTACTCTATTTTACCTCTTTCGCAGTAGGTCT
AATAAGCAAGTACCCATACAATTTTAGAAGAATAACTGGATTGAGGCTAGAAACATTTGATAAATTAGTTCAAAAAGTAAGGCCTGTCTTTGAAAAGTTA
GAAGCGAGCAAGCTGCGCCATGGACGTCGGAGCCATTTACCTACCTTAGAGGATAAACTGCTCTGTGTTTTGGTATATTACCGCACCTATATTAGCCATG
TATTTCTAGGCTACTTATTTAACTTACACAACGCTAACATATGCCGCTTGCTAAGAAAAATGGAGCCCTTACTAGCTAAGAAAATTAGCATTAAAAAAGA
TAGGACTTTAACCCCAGACAAGGTATTGCGCATATTAGCAGATGTAAGTGAACAGCCTACGCAAAGACCTAGTAAAAAGCAAAAGAAATCTTATTCAGGC
AAGAAAAAGAGACATACCATAAAAACAGAGATAGTCATCAGAGAAGATGGGAGAATACTGTCTGTCTCCAAATCACATAAAGGAAGAGTGCATGACTTTA
AAATCCGTAAAGGAGAAAAACCCTTACCTAAAGAAAGCTTAAAGCTGGCAGATAGTGGTTATCAAGGCTGGCAAAAGCTACAGAGCAATGTAATGATACC
CTACAAAAAGAGCCGTAAGCGGCCATTAACCAAAGAGCAAAAAGACCATAACAGAAAGCTAGCCTCCATACGCATGAAGGTAGAGCATAAGATAAGAGAG
ATCAAGGTATTTAAAATTATGGCAGAGGTATACAGGAATTTTCAGAAAAAATATAACCTTCGCTTTAACATTATATCCGGGCTTATAAACTTCAAGTACG
CTTTTTAACAAATAATGTCGCTAGAGCCAAGCTCCCTTCTTTATTTTATTTAAAATTCTACTCTATTTTACCTCTTTCGCAGTAGGTCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
828 bp | 275 aa | 81 | 908 | + | No |
Chemistry : DDE
ORF sequence :
MHLTYTRISKYPYNFRRITGLRLETFDKLVQKVRPVFEKLEASKLRHGRRSHLPTLEDKLLCVLVYYRTYISHVFLGYLFNLHNANICRLLRKMEPLLAK
KISIKKDRTLTPDKVLRILADVSEQPTQRPSKKQKKSYSGKKKRHTIKTEIVIREDGRILSVSKSHKGRVHDFKIRKGEKPLPKESLKLADSGYQGWQKL
QSNVMIPYKKSRKRPLTKEQKDHNRKLASIRMKVEHKIREIKVFKIMAEVYRNFQKKYNLRFNIISGLINFKYAF
KISIKKDRTLTPDKVLRILADVSEQPTQRPSKKQKKSYSGKKKRHTIKTEIVIREDGRILSVSKSHKGRVHDFKIRKGEKPLPKESLKLADSGYQGWQKL
QSNVMIPYKKSRKRPLTKEQKDHNRKLASIRMKVEHKIREIKVFKIMAEVYRNFQKKYNLRFNIISGLINFKYAF
Blast result :
Comments
ISCaa6 is 58% aa similar to ISOt6.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.