ISHmo2

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010337 ND Heliobacterium modesticaldum
Heliobacterium modesticaldum Ice1
DNA section
IS Length : 1914 bp

Ends


IR Length : 12/15

IRL : GAGTCTGTCTAAAAACCCCCCTCAAGAGAGGGCAAAAAGCAAGACGTTTT
IRR : GAGGCCGTCTAGAAAATAAGCAAATTCCTAGCCAGCCCTTGCAAAAGCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCAGGTCCTTCATGGTCGAAACGG5
AAGCGTTATCTCTTAAAGCGTTATC5
GTTAAATTACAGATAGACAAACATT5
TGAACTCAAGTTAGGTATTC0
TTCAATCCCCTACATAGCGGGTCATC6
ATGAATGCCTTGGTAGATCAGAACA5

DNA sequence

GAGTCTGTCTAAAAACCCCCCTCAAGAGAGGGCAAAAAGCAAGACGTTTTTATATGGAAATCGGTGGAATTTAAAGGGAATTTGACTCTTCGCGTCGAAG
GATATAGGTACAAAGACTGTTTATAGCGAGGCGATGTACCTTGTTTCGATTCGATGTGGATCCCCAAGTTAGCTTTTACGACTTTGCAGCCCTCTGGGAC
CAACTTGTGCCTGCCGATTCCGTCTTTCGCCTGTTTCGTGAATTGGCGCCCCTATTAATACAACCGGAGGATTTTACAGGTCTCTATTGCCTTGACAACG
GACGTCCCAGTCATGCGGCCCGGCAGATGACGATGGCCTGCATGTTACAGGAAATGCTGGGCGAAACAGACCGGGGGATGGAAGCACAGACACGTGTGAA
CATCGAGGTCAAGTTTGCGTTAGGAATGGCCCTCGATGAACCGGGCATTGATCACGCCAATTTTGGCGTCCACCGGCAACGGCTCATCCAAAAGGAACTT
GATAAGGTCTATCTCGATCGCTTTATCCGGTTGATGTACTACCTGGGCGTTTTGACAGGGAAAGAACCTTGGATAACGGACACGACCCATGTCATAGCTC
CCATCAGTGCCCCCACGACCATCGAACTGATCCGCCAAGCCATGCGCCTGTTGGTGCGTCTTTTGGCGAAGCAATACAGTGTTCCATGGCATGCAATCCC
CCATGCCCCTCGGGCGGTACGTTACCTGGAAACAGTGACGGAAGTGAAAGAGCATAACCTGGACGATAAGGCCAAAATGGAACGGCTTGTTGAAGTGGTC
AGCGAGGCTGACGAACTGCTGGCCTACGTGGAGTCATCGGAGGCTTCGTGGAAGAAGAAGCCCGATGTCATTCATTACGCCCTTTTGCTTTGCCGTATCC
TCCGTGAACGAATCATTCGGAAAGATGATGGAACTCTTGAGATAGCCCCCGGCGGTTCTGTCAAAGATATGATAGTTTCGGCTGTAGACAGCGAAGCCCG
TTTCGGTTGTAAGGGCAAGACGAAATGGCGCGGGTATAAGATGGCCATCGTCGAAGTCGGAAATTCCGGATTTATCGCCGCCGCCGAGGCCATGAAAGCC
AACGACTATGACGGCTCCAGTCTGGTGCCGTTAGCGGATCAGCTTCCCACCGATTGTGTAGAAAACCCGACGATCATTGGAGATACCCACTATGGTGCGG
GCGATGACCGTGTCACCCTCAAGGAAAAAGGCATTGACGTAGTGGCGCCACTTTCACCAAAGACAAAATGTGATATCCTCGCGGGCGAGGGATTTCAAGT
TTCCGAAGACCAAACACAACTGATCTGCCCGAGAGGAAAAGTCATCACCACCTATTCGGAAGTGGCAGATGGGAAGAACTTCGTGCTTCGCGCCAAGGAC
CATGATTGCAAGCACTGCCCTCGTTACACGACCTGTTTTAAAGAAAAGAAACATCGGCGCACGATTTTTATTCACAACGCCTATGGTGTCATGCTCGAGG
CGGCAAAGCACTCCCAAACGAAAATCTATAAGGAACAGATGCGTCTTCGCAGCCGCATCGAAGCCAAGCAAAATGAACTGGTCAACCGTTACGGACTGCG
CCGGGTTCGCCGTATCGGAAAACGAAATCTGGCTTATGCCGCCCGGCTCAGCGCGTTAGCGGCGAACTTTCAAAAACTCAACCGTCTACGAAATGATAAG
AATGCAACCATGGTGTTGGAGGTGAGCGCCTTACGCGGTGTTGCTTTCAAAAAAGCCGCATAAGGTGCAAGGGGGAGATCTGCCCTTTTTGAGGAAAATC
CTCAAAAAGGGCTGCTGAGACCGATAAAAAGACTCTGGTTTTTTGCTGTTTGTATTAAAAAATCATGCTTTTGCAAGGGCTGGCTAGGAATTTGCTTATT
TTCTAGACGGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1623 bp540 aa1411763+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFRFDVDPQVSFYDFAALWDQLVPADSVFRLFRELAPLLIQPEDFTGLYCLDNGRPSHAARQMTMACMLQEMLGETDRGMEAQTRVNIEVKFALGMALDE
PGIDHANFGVHRQRLIQKELDKVYLDRFIRLMYYLGVLTGKEPWITDTTHVIAPISAPTTIELIRQAMRLLVRLLAKQYSVPWHAIPHAPRAVRYLETVT
EVKEHNLDDKAKMERLVEVVSEADELLAYVESSEASWKKKPDVIHYALLLCRILRERIIRKDDGTLEIAPGGSVKDMIVSAVDSEARFGCKGKTKWRGYK
MAIVEVGNSGFIAAAEAMKANDYDGSSLVPLADQLPTDCVENPTIIGDTHYGAGDDRVTLKEKGIDVVAPLSPKTKCDILAGEGFQVSEDQTQLICPRGK
VITTYSEVADGKNFVLRAKDHDCKHCPRYTTCFKEKKHRRTIFIHNAYGVMLEAAKHSQTKIYKEQMRLRSRIEAKQNELVNRYGLRRVRRIGKRNLAYA
ARLSALAANFQKLNRLRNDKNATMVLEVSALRGVAFKKAA

 

Blast result :
Comments
ISHmo2 is 41% aa similar to ISRxy1.
References
1] ISfinder annotation (2010)
2] Sattley,W.M., Madigan,M.T., Swingley,W.D., Cheung,P.C., Clocksin,K.M., Conrad,A.L., Dejesa,L.C., Honchak,B.M., Jung,D.O., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Page,L.E., Taylor,H.L., Wang,Z.T., Raymond,J., Chen,M., Blankenship,R.E. and Touchman,J.W. (2008) J. Bacteriol. 190 (13), 4687-4696