ISHmo2
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010337 | ND | Heliobacterium modesticaldum | Heliobacterium modesticaldum Ice1 |
DNA section
IS Length : 1914 bp
Ends
IR Length : 12/15
IRL : GAGTCTGTCTAAAAACCCCCCTCAAGAGAGGGCAAAAAGCAAGACGTTTT
IRR : GAGGCCGTCTAGAAAATAAGCAAATTCCTAGCCAGCCCTTGCAAAAGCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCAGGTCCT | TCATG | GTCGAAACGG | 5 |
AAGCGTTATC | TCTTA | AAGCGTTATC | 5 |
GTTAAATTAC | AGATA | GACAAACATT | 5 |
TGAACTCAAG | TTAGGTATTC | 0 | |
TTCAATCCCC | TACATA | GCGGGTCATC | 6 |
ATGAATGCCT | TGGTA | GATCAGAACA | 5 |
DNA sequence
GAGTCTGTCTAAAAACCCCCCTCAAGAGAGGGCAAAAAGCAAGACGTTTTTATATGGAAATCGGTGGAATTTAAAGGGAATTTGACTCTTCGCGTCGAAG
GATATAGGTACAAAGACTGTTTATAGCGAGGCGATGTACCTTGTTTCGATTCGATGTGGATCCCCAAGTTAGCTTTTACGACTTTGCAGCCCTCTGGGAC
CAACTTGTGCCTGCCGATTCCGTCTTTCGCCTGTTTCGTGAATTGGCGCCCCTATTAATACAACCGGAGGATTTTACAGGTCTCTATTGCCTTGACAACG
GACGTCCCAGTCATGCGGCCCGGCAGATGACGATGGCCTGCATGTTACAGGAAATGCTGGGCGAAACAGACCGGGGGATGGAAGCACAGACACGTGTGAA
CATCGAGGTCAAGTTTGCGTTAGGAATGGCCCTCGATGAACCGGGCATTGATCACGCCAATTTTGGCGTCCACCGGCAACGGCTCATCCAAAAGGAACTT
GATAAGGTCTATCTCGATCGCTTTATCCGGTTGATGTACTACCTGGGCGTTTTGACAGGGAAAGAACCTTGGATAACGGACACGACCCATGTCATAGCTC
CCATCAGTGCCCCCACGACCATCGAACTGATCCGCCAAGCCATGCGCCTGTTGGTGCGTCTTTTGGCGAAGCAATACAGTGTTCCATGGCATGCAATCCC
CCATGCCCCTCGGGCGGTACGTTACCTGGAAACAGTGACGGAAGTGAAAGAGCATAACCTGGACGATAAGGCCAAAATGGAACGGCTTGTTGAAGTGGTC
AGCGAGGCTGACGAACTGCTGGCCTACGTGGAGTCATCGGAGGCTTCGTGGAAGAAGAAGCCCGATGTCATTCATTACGCCCTTTTGCTTTGCCGTATCC
TCCGTGAACGAATCATTCGGAAAGATGATGGAACTCTTGAGATAGCCCCCGGCGGTTCTGTCAAAGATATGATAGTTTCGGCTGTAGACAGCGAAGCCCG
TTTCGGTTGTAAGGGCAAGACGAAATGGCGCGGGTATAAGATGGCCATCGTCGAAGTCGGAAATTCCGGATTTATCGCCGCCGCCGAGGCCATGAAAGCC
AACGACTATGACGGCTCCAGTCTGGTGCCGTTAGCGGATCAGCTTCCCACCGATTGTGTAGAAAACCCGACGATCATTGGAGATACCCACTATGGTGCGG
GCGATGACCGTGTCACCCTCAAGGAAAAAGGCATTGACGTAGTGGCGCCACTTTCACCAAAGACAAAATGTGATATCCTCGCGGGCGAGGGATTTCAAGT
TTCCGAAGACCAAACACAACTGATCTGCCCGAGAGGAAAAGTCATCACCACCTATTCGGAAGTGGCAGATGGGAAGAACTTCGTGCTTCGCGCCAAGGAC
CATGATTGCAAGCACTGCCCTCGTTACACGACCTGTTTTAAAGAAAAGAAACATCGGCGCACGATTTTTATTCACAACGCCTATGGTGTCATGCTCGAGG
CGGCAAAGCACTCCCAAACGAAAATCTATAAGGAACAGATGCGTCTTCGCAGCCGCATCGAAGCCAAGCAAAATGAACTGGTCAACCGTTACGGACTGCG
CCGGGTTCGCCGTATCGGAAAACGAAATCTGGCTTATGCCGCCCGGCTCAGCGCGTTAGCGGCGAACTTTCAAAAACTCAACCGTCTACGAAATGATAAG
AATGCAACCATGGTGTTGGAGGTGAGCGCCTTACGCGGTGTTGCTTTCAAAAAAGCCGCATAAGGTGCAAGGGGGAGATCTGCCCTTTTTGAGGAAAATC
CTCAAAAAGGGCTGCTGAGACCGATAAAAAGACTCTGGTTTTTTGCTGTTTGTATTAAAAAATCATGCTTTTGCAAGGGCTGGCTAGGAATTTGCTTATT
TTCTAGACGGCCTC
GATATAGGTACAAAGACTGTTTATAGCGAGGCGATGTACCTTGTTTCGATTCGATGTGGATCCCCAAGTTAGCTTTTACGACTTTGCAGCCCTCTGGGAC
CAACTTGTGCCTGCCGATTCCGTCTTTCGCCTGTTTCGTGAATTGGCGCCCCTATTAATACAACCGGAGGATTTTACAGGTCTCTATTGCCTTGACAACG
GACGTCCCAGTCATGCGGCCCGGCAGATGACGATGGCCTGCATGTTACAGGAAATGCTGGGCGAAACAGACCGGGGGATGGAAGCACAGACACGTGTGAA
CATCGAGGTCAAGTTTGCGTTAGGAATGGCCCTCGATGAACCGGGCATTGATCACGCCAATTTTGGCGTCCACCGGCAACGGCTCATCCAAAAGGAACTT
GATAAGGTCTATCTCGATCGCTTTATCCGGTTGATGTACTACCTGGGCGTTTTGACAGGGAAAGAACCTTGGATAACGGACACGACCCATGTCATAGCTC
CCATCAGTGCCCCCACGACCATCGAACTGATCCGCCAAGCCATGCGCCTGTTGGTGCGTCTTTTGGCGAAGCAATACAGTGTTCCATGGCATGCAATCCC
CCATGCCCCTCGGGCGGTACGTTACCTGGAAACAGTGACGGAAGTGAAAGAGCATAACCTGGACGATAAGGCCAAAATGGAACGGCTTGTTGAAGTGGTC
AGCGAGGCTGACGAACTGCTGGCCTACGTGGAGTCATCGGAGGCTTCGTGGAAGAAGAAGCCCGATGTCATTCATTACGCCCTTTTGCTTTGCCGTATCC
TCCGTGAACGAATCATTCGGAAAGATGATGGAACTCTTGAGATAGCCCCCGGCGGTTCTGTCAAAGATATGATAGTTTCGGCTGTAGACAGCGAAGCCCG
TTTCGGTTGTAAGGGCAAGACGAAATGGCGCGGGTATAAGATGGCCATCGTCGAAGTCGGAAATTCCGGATTTATCGCCGCCGCCGAGGCCATGAAAGCC
AACGACTATGACGGCTCCAGTCTGGTGCCGTTAGCGGATCAGCTTCCCACCGATTGTGTAGAAAACCCGACGATCATTGGAGATACCCACTATGGTGCGG
GCGATGACCGTGTCACCCTCAAGGAAAAAGGCATTGACGTAGTGGCGCCACTTTCACCAAAGACAAAATGTGATATCCTCGCGGGCGAGGGATTTCAAGT
TTCCGAAGACCAAACACAACTGATCTGCCCGAGAGGAAAAGTCATCACCACCTATTCGGAAGTGGCAGATGGGAAGAACTTCGTGCTTCGCGCCAAGGAC
CATGATTGCAAGCACTGCCCTCGTTACACGACCTGTTTTAAAGAAAAGAAACATCGGCGCACGATTTTTATTCACAACGCCTATGGTGTCATGCTCGAGG
CGGCAAAGCACTCCCAAACGAAAATCTATAAGGAACAGATGCGTCTTCGCAGCCGCATCGAAGCCAAGCAAAATGAACTGGTCAACCGTTACGGACTGCG
CCGGGTTCGCCGTATCGGAAAACGAAATCTGGCTTATGCCGCCCGGCTCAGCGCGTTAGCGGCGAACTTTCAAAAACTCAACCGTCTACGAAATGATAAG
AATGCAACCATGGTGTTGGAGGTGAGCGCCTTACGCGGTGTTGCTTTCAAAAAAGCCGCATAAGGTGCAAGGGGGAGATCTGCCCTTTTTGAGGAAAATC
CTCAAAAAGGGCTGCTGAGACCGATAAAAAGACTCTGGTTTTTTGCTGTTTGTATTAAAAAATCATGCTTTTGCAAGGGCTGGCTAGGAATTTGCTTATT
TTCTAGACGGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1623 bp | 540 aa | 141 | 1763 | + | No |
Chemistry : DDE
ORF sequence :
MFRFDVDPQVSFYDFAALWDQLVPADSVFRLFRELAPLLIQPEDFTGLYCLDNGRPSHAARQMTMACMLQEMLGETDRGMEAQTRVNIEVKFALGMALDE
PGIDHANFGVHRQRLIQKELDKVYLDRFIRLMYYLGVLTGKEPWITDTTHVIAPISAPTTIELIRQAMRLLVRLLAKQYSVPWHAIPHAPRAVRYLETVT
EVKEHNLDDKAKMERLVEVVSEADELLAYVESSEASWKKKPDVIHYALLLCRILRERIIRKDDGTLEIAPGGSVKDMIVSAVDSEARFGCKGKTKWRGYK
MAIVEVGNSGFIAAAEAMKANDYDGSSLVPLADQLPTDCVENPTIIGDTHYGAGDDRVTLKEKGIDVVAPLSPKTKCDILAGEGFQVSEDQTQLICPRGK
VITTYSEVADGKNFVLRAKDHDCKHCPRYTTCFKEKKHRRTIFIHNAYGVMLEAAKHSQTKIYKEQMRLRSRIEAKQNELVNRYGLRRVRRIGKRNLAYA
ARLSALAANFQKLNRLRNDKNATMVLEVSALRGVAFKKAA
PGIDHANFGVHRQRLIQKELDKVYLDRFIRLMYYLGVLTGKEPWITDTTHVIAPISAPTTIELIRQAMRLLVRLLAKQYSVPWHAIPHAPRAVRYLETVT
EVKEHNLDDKAKMERLVEVVSEADELLAYVESSEASWKKKPDVIHYALLLCRILRERIIRKDDGTLEIAPGGSVKDMIVSAVDSEARFGCKGKTKWRGYK
MAIVEVGNSGFIAAAEAMKANDYDGSSLVPLADQLPTDCVENPTIIGDTHYGAGDDRVTLKEKGIDVVAPLSPKTKCDILAGEGFQVSEDQTQLICPRGK
VITTYSEVADGKNFVLRAKDHDCKHCPRYTTCFKEKKHRRTIFIHNAYGVMLEAAKHSQTKIYKEQMRLRSRIEAKQNELVNRYGLRRVRRIGKRNLAYA
ARLSALAANFQKLNRLRNDKNATMVLEVSALRGVAFKKAA
Blast result :
Comments
ISHmo2 is 41% aa similar to ISRxy1.
References
1] ISfinder annotation (2010)
2] Sattley,W.M., Madigan,M.T., Swingley,W.D., Cheung,P.C., Clocksin,K.M., Conrad,A.L., Dejesa,L.C., Honchak,B.M., Jung,D.O., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Page,L.E., Taylor,H.L., Wang,Z.T., Raymond,J., Chen,M., Blankenship,R.E. and Touchman,J.W. (2008) J. Bacteriol. 190 (13), 4687-4696
2] Sattley,W.M., Madigan,M.T., Swingley,W.D., Cheung,P.C., Clocksin,K.M., Conrad,A.L., Dejesa,L.C., Honchak,B.M., Jung,D.O., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Page,L.E., Taylor,H.L., Wang,Z.T., Raymond,J., Chen,M., Blankenship,R.E. and Touchman,J.W. (2008) J. Bacteriol. 190 (13), 4687-4696