ISMae22

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010296 ND Microcystis aeruginosa
Microcystis aeruginosa NIES-843
DNA section
IS Length : 1138 bp

Ends


IR Length : 21/32

IRL : TACTTTGCACGGCTACAACTTGCATTTTTTACTCAAGGACAATAATATAG
IRR : TACTTTAGACGTTCATAATCTGAGATTTATTAAACTTCTGAAATCGTAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTACCGCCTTTAGCTCGATTTA2
GGCCGGAAACTAGAAAAGTAAT2
GAAGAACAACTAACCTTTAGCT2
AATGTCGAGATAGAAGACCGTT2

DNA sequence

TACTTTGCACGGCTACAACTTGCATTTTTTACTCAAGGACAATAATATAGTTTAAGAGTCATAATTAGAAGCAAAGCACTCATTAAAAACATGATTAACC
TAGAATTCACGGAAGAAGAAAAGAACTCACTGTATTATGAAAGATTTCATCATCCCCATCCCCGGGTTCAACTGAAGATGGAAGTTCTCTGGTTAAAAAG
CCAAAAGATACCGCACCAAAAAATTTGTCAGTTAGCAGGAATCTCGCCAAATACCTTATTAACCTATCTTCGAGATTATCAAGAGGGCGGAATAGAAAAA
TTAAAAGAAATCAACTTCTATCGCCCTAAAAGTGAATTAGAGTCTCAAAGAGAAACGCTCAAAAAATATTTCGAGAAAAATCCACCAGCCACAATAAATG
AAGCTGTATATAGAAGAGAAGAATTGACAGGAATAAAACGAAGTCCTACCCAAGTGAGAAAATTCTTAAAATCCTTGGGAATGAAATGTTTAAAAATAGG
TTCTCTTCCTTCTAAAGCTGACCCAGATGAACAAGAAGAATACAAAGAAAAAAAGCTAGAACCCAGACTAAATGAGGCTAAAGAAGGAAAAAGGGCTGTT
TTTTTTGTTGATGCCGCTCACTTCGTCATGGGAGCATTTCTCGGTTTTGTTTGGTGTTTTGAGAGACTTTTTGTTAAGTCACCGAGCGGGCGTAAACGCT
TCAATGTTTTAGGAGCATTAAATGCAATAACTCATGAAGTTATTCTGGTTACGAATGACACTTATATTACGGCAACTCAAGTCTGTGAACTCCGGTCAAA
AATAGCTGCTTTAGGACTAATGATTCCCATCACTCTAGTCTTAGATAATGCCCGCTATCAAAAATGTCAAATTGTTGAAGAATTAGCTCTTTCTTTGTCA
ATAGAACTGCTCTATCTGCCGTCTTATTCACCTAATCTAAATTTAATTGAAAGGCTGTGGAAATTTGTCAAAAAGAAATGTTTATATGGTAAATATTATG
AAAACTTTTCTGACTTTTCTTCAGCCATTTATGAATGTTTGAATGATGCCCATTTGAAACATAAAAAAGAACTGGATTCCTTGCTGACTCTACGATTTCA
GAAGTTTAATAAATCTCAGATTATGAACGTCTAAAGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa911134+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MINLEFTEEEKNSLYYERFHHPHPRVQLKMEVLWLKSQKIPHQKICQLAGISPNTLLTYLRDYQEGGIEKLKEINFYRPKSELESQRETLKKYFEKNPPA
TINEAVYRREELTGIKRSPTQVRKFLKSLGMKCLKIGSLPSKADPDEQEEYKEKKLEPRLNEAKEGKRAVFFVDAAHFVMGAFLGFVWCFERLFVKSPSG
RKRFNVLGALNAITHEVILVTNDTYITATQVCELRSKIAALGLMIPITLVLDNARYQKCQIVEELALSLSIELLYLPSYSPNLNLIERLWKFVKKKCLYG
KYYENFSDFSSAIYECLNDAHLKHKKELDSLLTLRFQKFNKSQIMNV

 

Blast result :
Comments
ISMae22 is 73% aa similar to ISAcma41.
References
1] Modified and submitted by ISfinder (2010)

2] Kaneko,T., Nakajima,N., Okamoto,S., Suzuki,I., Tanabe,Y., Tamaoki,M., Nakamura,Y., Kasai,F., Watanabe,A., Kawashima,K., Kishida,Y., Ono,A., Shimizu,Y., Takahashi,C., Minami,C., Fujishiro,T., Kohara,M., Katoh,M., Nakazaki,N., Nakayama,S., Yamada,M., Tabata,S. and Watanabe,M.M. (2007) DNA Res. 14 (6), 247-256.