ISStau8

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMD01000059 ND Stigmatella aurantiaca
Stigmatella aurantiaca DW4/3-1
DNA section
IS Length : 1749 bp

Ends


IR Length : 12/15

IRL : GACACGGATCGGTTTCCAGTCCCAGTAAATTCGAGCATTTAGCGAGGGGA
IRR : AACACCGACCGGTTTATGAGCCCGTCATCGGTTCCCCATGCTGCTGAGCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATCGGCTCGCCTAGCAGCCCTTCC4

DNA sequence

GACACGGATCGGTTTCCAGTCCCAGTAAATTCGAGCATTTAGCGAGGGGATCGACAAGAGCCCCCAGATTTGATCAGGTGGCCACCCTACTTGGCAAGTA
ACATCCGAGAGAGGTGACCATGGGGATCATGCGGTGGAGGCCGCCGGAGCCATTGAGCGAGCAAGAAGAGCAGTTCGTGAAGAGGATGGGGAGGAAGGGA
AAGCTGTTTGCGTTCCTGCGCCAACATCGCCACGAGCTGTTGGATGAAGCCTTTCAGGAAGAACTGGAAGGGATGTACCGAGACACGGGAGCGGGAAAGA
CGCCAGTGCCGCCGGGACTGATGGCGATGGCGACACTGTTGCAAGGCTACCTGGGAGCCTCGGACGCAACGATGGTGGAACTGACAGTGTTCGACCTGCG
AGTGCAGATGGTGCTGGATTGCCTGGGACAAACAGAGCCGGCCTTCAGCCAGGGAGCCTTCTACGACTTTCGGCATCGTCTGATTCGAGAGCAGATGGAC
CAGAGGCTGTTGGAAAAGACGGTGGAGGTGGCGCGCCAGCGGATGAGGTGGGAGGCGCGCCAGACCAAGAGCCTGCTGAAAGTGGCCATCGACTCGAAGC
CGTTGGAGGGAGCGGGGCGAGTGGAGGACACGCTCAACCTGTTGGGTCATGCGGCGCGCAAGGTGGTGATGTGTGTGGCCAAGCACTTGGAAATTCCAAT
GAGTTTAGTGTGCCAAGAGGCAGGCATCCCCGTGTTGCTGGAATCGAGCGTGAAGAAGGGGCTGGATGTGGACTGGAACGAGCGTGAGCAAAAAGCCCGA
GCGCTCCAGAAGTTGTACAAGCAGGTAGAGTCCTTGAAGAAGTGGCTGAAAAAGAACCTACCTGAGCACGTGACGCAGGCCCCGTTATCCGAGCACCTGA
AGACGCTGGAGCAGGTGAGCCGCCAGAATCTGGAGCCCGACCCCAACGGAGGAGGAGTGCGAATCCGCTGGGGAGTGGCCGAAGACAGGCGAGTGTCCAT
TGAAGATGGGCAAATGCGCCACGGCCGCAAGAGTCAGAGCAAGCGTTTCAACGGCTACAAGCAGCACATCGCCACGGAGTTGGAGGGGGACCTCATCCTT
GCGTGTGAAGTGACGCCCGCGAATCGTCCCGAGCAGGAGGCAGCGCAAGCGCTCCAGAAGGACATCGAGCGGCAGGGCTTACAGATTGCAGAATTGTATA
TAGATAGAGGGTATATCAACAGCCCAGTAGTGGAGGAGGTACAGAAGAAGGGCGGCGAGGTGGTCTGCAAGGCTTGGGGCAGCCAGAACGGAGAGTTGTT
CGCCAAGTCCGCTTTCCATCTGAACATGAGCCGACGGACGGTGACGTGTCCTGCTGGGCAGAGCCAGTCCTTTACGCTGGGCCATGTGGTGGAATTTGAG
GCACAGAAGTGCGCGAGCTGTCCGCTTCGAGAGAAGTGCACGAGCGCTGCCTCCGGCAGAGGCAGGACGGTGTCCATCGCTGAGAACGAGCCTCTTCAAC
ACCGATTGCGCAAGCTGACGAAGAGCCCTGCTGGGCGAGCGCGCTTGCGCCAGCGCGTCAGCGTCGAACACCGGTTGGCTCATCTGTCGCGAAGGCAGGG
GCATCGCGCTCGGTATCGAGGTATTCGCAAGAACGTCTTTGATTTGCGTCGCGCTGCCGCCCTTCAGAACATCGAGTCATGGCAACGCCACTCAGCACCT
GCTCAGCAGCATGGGGAACCGATGACGGGCTCATAAACCGGTCGGTGTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1608 bp538 aa1291736+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGIMRWRPPEPLSEQEEQFVKRMGRKGKLFAFLRQHRHELLDEAFQEELEGMYRDTGAGKTPVPPGLMAMATLLQGYLGASDATMVELTVFDLRVQMVLD
CLGQTEPAFSQGAFYDFRHRLIREQMDQRLLEKTVEVARQRMRWEARQTKSLLKVAIDSKPLEGAGRVEDTLNLLGHAARKVVMCVAKHLEIPMSLVCQE
AGIPVLLESSVKKGLDVDWNEREQKARALQKLYKQVESLKKWLKKNLPEHVTQAPLSEHLKTLEQVSRQNLEPDPNGGGVRIRWGVAEDRRVSIEDGQMR
HGRKSQSKRFNGYKQHIATELEGDLILACEVTPANRPEQEAAQALQKDIERQGLQIAELYIDRGYINSPVVEEVQKKGGEVVCKAWGSQNGELFAKSAFH
LNMSRRTVTCPAGQSQSFTLGHVVEFEAQKCASCPLREKCTSAASGRGRTVSIAENEPLQHRLRKLTKSPAGRARLRQRVSVEHRLAHLSRRQGHRARYR
GIRKNVFDLRRAAALQNIESWQRHSAPAQQHGEPMTGS

 

Blast result :
Comments
ISStau8 is 70% aa similar to ISStau7.
References
1] ISfinder annotation (2010)
2] Nierman,W.C. (2006) Direct submission GenBank.