ISLpn13

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF386079 ND Legionella pneumophila
Legionella pneumophila 130b
DNA section
IS Length : 1674 bp

Ends


IR Length : 20/27

IRL : AGCGCCGATCGATTAATTTTTAACCAGATCGACATTGTTCAAATTTTATG
IRR : AGCGCCGAATGATTTAAATTTACGCAGCTAAATTCATAGCGATGTGTAAA

Insertion site


Left flankDirect repeatRight flankDR Length
GTCATATAGACTAGGGTCTGTTGA4

DNA sequence

AGCGCCGATCGATTAATTTTTAACCAGATCGACATTGTTCAAATTTTATGATCAAATTCATGCAGACAAGTGTAAAGGAGTGTGCATGATAAAGCAGGAA
AACTGGATTTACCCCATTGAGCTATCAAAAAAAGAAGAGAAGATCTGCAGCAAATTAAAACAAAATGGGAAGTTATTTATTTTTTTAAGAAAAAATCGAC
ATCTTATTTTTACTGCTGATATAAGCCAGAAATTATTGTCGATGTATGCAGATTATCCTCGTGGTAAGCCATTGATTAGCCCTACGCTTCTTGCAATGGT
TTCGATATTACAAGCTTATGAGCAATTATCGGATTCTTCAGCTGTTCTTGAAACGATGTTTGATCAACGCTGGCAAATGGTTTTAGGCTGTCTTGGAGCA
GAAGAAAGCATCTTTTCTCAAGGTACATTGTGTGATTTTAGGCATCGATTAGTAAAACATAATTTGGATACAATGCTGCTTGAGCAAACGGTAGAGGTAG
CCAAGGAAGTTGGTGGATTTTGTTATAAGCAGTTAAGAATAGCGCTAGATTCGGCGCCATTAGAAGGCGCTGGTCGAGTAGAAGATACCTTCAATTTGAT
TGGTCATGCCTTAGAGTTAGTGGTTGATTGTGCTGCTCAAATAAAGCAAGTTGATGAAATTGAGATTATCAAGGAAGCGGGCACATACTTAATTGGCCGT
AGTAGTATAAAGGCTGCCTTGGATATTGACTGGTCGGATATTCAAGAAAAACAAAAAGCCATTAATACATTGCTTAAAGATGTTGAAGCATTACAACGCT
GGCTAAGCGGGCAATCTGATTCATTGATAAACAATCAATATCTAAAAGAAGCATTGTCATTATTAGATACTGTTTTAAATCAGAATATTGAACCTGATCC
AGATGGTGGTTCCAAAATTATCAGAGGCGTTTCTACAGATAGAAGAATCTCTATCTCAGATAGTGATATGCGTCATGGTCGTAAATCAAGCTCTCGTACA
ATCAATGGATTTAAACAGCATATCGCTATTGATCTTGATCATAAGTTAATTTTGGCAACAAGCGTACGTCCAGCTAATGAACCAGAACATGAAGCAAGCC
AATGGCTTAAGCCAAAAGTTGAAAAATATGGGGAGGTTGCCTCAAAGAGTATTGATCGGGGGTACCTTTCTGCATCATGGACTGCTGAGTTATTTTCACA
AGGTAAAAAGATCATTGCTAAGCCATGGAATCCAGCAACACATGGAAAATATGGGAAAAAAGATTTTATCATTGATTTACAAAATTCAATGGTCATTTGT
CCTGCTGGCAAACAGCAAAAAATCACAGGCAAACCAGGAAGCCTGATGGCCAAATTCTCAGCCAAACTCTGTGGTGCTTGTCCCATAAAGAACAAATGCA
GTGACTCAAAGACTGGAAGAGTGATTCAAATTCATGACCAAGAGAAAATGCTGCAGGCATTGAAATATTATGTTACGTCGCCTGAGGGTCGTCAGGAAGC
AAGAGAACGTGTTAAAGTAGAGCATGCTCTTTGCGACCATTTGTAATCGTAAAGGACCAAGAGCAAGATATATCGGATTAAGACTTAATGAGTATGATTT
GAACCGAACTGCCATGATTACTAATTTACACATCGCTATGAATTTAGCTGCGTAAATTTAAATCATTCGGCGCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1461 bp486 aa861546+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKQENWIYPIELSKKEEKICSKLKQNGKLFIFLRKNRHLIFTADISQKLLSMYADYPRGKPLISPTLLAMVSILQAYEQLSDSSAVLETMFDQRWQMVL
GCLGAEESIFSQGTLCDFRHRLVKHNLDTMLLEQTVEVAKEVGGFCYKQLRIALDSAPLEGAGRVEDTFNLIGHALELVVDCAAQIKQVDEIEIIKEAGT
YLIGRSSIKAALDIDWSDIQEKQKAINTLLKDVEALQRWLSGQSDSLINNQYLKEALSLLDTVLNQNIEPDPDGGSKIIRGVSTDRRISISDSDMRHGRK
SSSRTINGFKQHIAIDLDHKLILATSVRPANEPEHEASQWLKPKVEKYGEVASKSIDRGYLSASWTAELFSQGKKIIAKPWNPATHGKYGKKDFIIDLQN
SMVICPAGKQQKITGKPGSLMAKFSAKLCGACPIKNKCSDSKTGRVIQIHDQEKMLQALKYYVTSPEGRQEARERVKVEHALCDHL

 

Blast result :
Comments
ISLpn13 is 57% aa similar to ISGvi6.
The sequence was renamed because ISLp1 is already used by another IS.
References
1] ISfinder annotation (2010)
2] Viswanathan,V.K., Kurtz,S., Pedersen,L.L., Abu-Kwaik,Y., Krcmarik,K., Mody,S. and Cianciotto,N.P. (2002) Infect. Immun. 70 (4), 1842-1852.