ISLpn13
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF386079 | ND | Legionella pneumophila | Legionella pneumophila 130b |
DNA section
IS Length : 1674 bp
Ends
IR Length : 20/27
IRL : AGCGCCGATCGATTAATTTTTAACCAGATCGACATTGTTCAAATTTTATG
IRR : AGCGCCGAATGATTTAAATTTACGCAGCTAAATTCATAGCGATGTGTAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTCATATAGA | CTAG | GGTCTGTTGA | 4 |
DNA sequence
AGCGCCGATCGATTAATTTTTAACCAGATCGACATTGTTCAAATTTTATGATCAAATTCATGCAGACAAGTGTAAAGGAGTGTGCATGATAAAGCAGGAA
AACTGGATTTACCCCATTGAGCTATCAAAAAAAGAAGAGAAGATCTGCAGCAAATTAAAACAAAATGGGAAGTTATTTATTTTTTTAAGAAAAAATCGAC
ATCTTATTTTTACTGCTGATATAAGCCAGAAATTATTGTCGATGTATGCAGATTATCCTCGTGGTAAGCCATTGATTAGCCCTACGCTTCTTGCAATGGT
TTCGATATTACAAGCTTATGAGCAATTATCGGATTCTTCAGCTGTTCTTGAAACGATGTTTGATCAACGCTGGCAAATGGTTTTAGGCTGTCTTGGAGCA
GAAGAAAGCATCTTTTCTCAAGGTACATTGTGTGATTTTAGGCATCGATTAGTAAAACATAATTTGGATACAATGCTGCTTGAGCAAACGGTAGAGGTAG
CCAAGGAAGTTGGTGGATTTTGTTATAAGCAGTTAAGAATAGCGCTAGATTCGGCGCCATTAGAAGGCGCTGGTCGAGTAGAAGATACCTTCAATTTGAT
TGGTCATGCCTTAGAGTTAGTGGTTGATTGTGCTGCTCAAATAAAGCAAGTTGATGAAATTGAGATTATCAAGGAAGCGGGCACATACTTAATTGGCCGT
AGTAGTATAAAGGCTGCCTTGGATATTGACTGGTCGGATATTCAAGAAAAACAAAAAGCCATTAATACATTGCTTAAAGATGTTGAAGCATTACAACGCT
GGCTAAGCGGGCAATCTGATTCATTGATAAACAATCAATATCTAAAAGAAGCATTGTCATTATTAGATACTGTTTTAAATCAGAATATTGAACCTGATCC
AGATGGTGGTTCCAAAATTATCAGAGGCGTTTCTACAGATAGAAGAATCTCTATCTCAGATAGTGATATGCGTCATGGTCGTAAATCAAGCTCTCGTACA
ATCAATGGATTTAAACAGCATATCGCTATTGATCTTGATCATAAGTTAATTTTGGCAACAAGCGTACGTCCAGCTAATGAACCAGAACATGAAGCAAGCC
AATGGCTTAAGCCAAAAGTTGAAAAATATGGGGAGGTTGCCTCAAAGAGTATTGATCGGGGGTACCTTTCTGCATCATGGACTGCTGAGTTATTTTCACA
AGGTAAAAAGATCATTGCTAAGCCATGGAATCCAGCAACACATGGAAAATATGGGAAAAAAGATTTTATCATTGATTTACAAAATTCAATGGTCATTTGT
CCTGCTGGCAAACAGCAAAAAATCACAGGCAAACCAGGAAGCCTGATGGCCAAATTCTCAGCCAAACTCTGTGGTGCTTGTCCCATAAAGAACAAATGCA
GTGACTCAAAGACTGGAAGAGTGATTCAAATTCATGACCAAGAGAAAATGCTGCAGGCATTGAAATATTATGTTACGTCGCCTGAGGGTCGTCAGGAAGC
AAGAGAACGTGTTAAAGTAGAGCATGCTCTTTGCGACCATTTGTAATCGTAAAGGACCAAGAGCAAGATATATCGGATTAAGACTTAATGAGTATGATTT
GAACCGAACTGCCATGATTACTAATTTACACATCGCTATGAATTTAGCTGCGTAAATTTAAATCATTCGGCGCT
AACTGGATTTACCCCATTGAGCTATCAAAAAAAGAAGAGAAGATCTGCAGCAAATTAAAACAAAATGGGAAGTTATTTATTTTTTTAAGAAAAAATCGAC
ATCTTATTTTTACTGCTGATATAAGCCAGAAATTATTGTCGATGTATGCAGATTATCCTCGTGGTAAGCCATTGATTAGCCCTACGCTTCTTGCAATGGT
TTCGATATTACAAGCTTATGAGCAATTATCGGATTCTTCAGCTGTTCTTGAAACGATGTTTGATCAACGCTGGCAAATGGTTTTAGGCTGTCTTGGAGCA
GAAGAAAGCATCTTTTCTCAAGGTACATTGTGTGATTTTAGGCATCGATTAGTAAAACATAATTTGGATACAATGCTGCTTGAGCAAACGGTAGAGGTAG
CCAAGGAAGTTGGTGGATTTTGTTATAAGCAGTTAAGAATAGCGCTAGATTCGGCGCCATTAGAAGGCGCTGGTCGAGTAGAAGATACCTTCAATTTGAT
TGGTCATGCCTTAGAGTTAGTGGTTGATTGTGCTGCTCAAATAAAGCAAGTTGATGAAATTGAGATTATCAAGGAAGCGGGCACATACTTAATTGGCCGT
AGTAGTATAAAGGCTGCCTTGGATATTGACTGGTCGGATATTCAAGAAAAACAAAAAGCCATTAATACATTGCTTAAAGATGTTGAAGCATTACAACGCT
GGCTAAGCGGGCAATCTGATTCATTGATAAACAATCAATATCTAAAAGAAGCATTGTCATTATTAGATACTGTTTTAAATCAGAATATTGAACCTGATCC
AGATGGTGGTTCCAAAATTATCAGAGGCGTTTCTACAGATAGAAGAATCTCTATCTCAGATAGTGATATGCGTCATGGTCGTAAATCAAGCTCTCGTACA
ATCAATGGATTTAAACAGCATATCGCTATTGATCTTGATCATAAGTTAATTTTGGCAACAAGCGTACGTCCAGCTAATGAACCAGAACATGAAGCAAGCC
AATGGCTTAAGCCAAAAGTTGAAAAATATGGGGAGGTTGCCTCAAAGAGTATTGATCGGGGGTACCTTTCTGCATCATGGACTGCTGAGTTATTTTCACA
AGGTAAAAAGATCATTGCTAAGCCATGGAATCCAGCAACACATGGAAAATATGGGAAAAAAGATTTTATCATTGATTTACAAAATTCAATGGTCATTTGT
CCTGCTGGCAAACAGCAAAAAATCACAGGCAAACCAGGAAGCCTGATGGCCAAATTCTCAGCCAAACTCTGTGGTGCTTGTCCCATAAAGAACAAATGCA
GTGACTCAAAGACTGGAAGAGTGATTCAAATTCATGACCAAGAGAAAATGCTGCAGGCATTGAAATATTATGTTACGTCGCCTGAGGGTCGTCAGGAAGC
AAGAGAACGTGTTAAAGTAGAGCATGCTCTTTGCGACCATTTGTAATCGTAAAGGACCAAGAGCAAGATATATCGGATTAAGACTTAATGAGTATGATTT
GAACCGAACTGCCATGATTACTAATTTACACATCGCTATGAATTTAGCTGCGTAAATTTAAATCATTCGGCGCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1461 bp | 486 aa | 86 | 1546 | + | No |
Chemistry : DDE
ORF sequence :
MIKQENWIYPIELSKKEEKICSKLKQNGKLFIFLRKNRHLIFTADISQKLLSMYADYPRGKPLISPTLLAMVSILQAYEQLSDSSAVLETMFDQRWQMVL
GCLGAEESIFSQGTLCDFRHRLVKHNLDTMLLEQTVEVAKEVGGFCYKQLRIALDSAPLEGAGRVEDTFNLIGHALELVVDCAAQIKQVDEIEIIKEAGT
YLIGRSSIKAALDIDWSDIQEKQKAINTLLKDVEALQRWLSGQSDSLINNQYLKEALSLLDTVLNQNIEPDPDGGSKIIRGVSTDRRISISDSDMRHGRK
SSSRTINGFKQHIAIDLDHKLILATSVRPANEPEHEASQWLKPKVEKYGEVASKSIDRGYLSASWTAELFSQGKKIIAKPWNPATHGKYGKKDFIIDLQN
SMVICPAGKQQKITGKPGSLMAKFSAKLCGACPIKNKCSDSKTGRVIQIHDQEKMLQALKYYVTSPEGRQEARERVKVEHALCDHL
GCLGAEESIFSQGTLCDFRHRLVKHNLDTMLLEQTVEVAKEVGGFCYKQLRIALDSAPLEGAGRVEDTFNLIGHALELVVDCAAQIKQVDEIEIIKEAGT
YLIGRSSIKAALDIDWSDIQEKQKAINTLLKDVEALQRWLSGQSDSLINNQYLKEALSLLDTVLNQNIEPDPDGGSKIIRGVSTDRRISISDSDMRHGRK
SSSRTINGFKQHIAIDLDHKLILATSVRPANEPEHEASQWLKPKVEKYGEVASKSIDRGYLSASWTAELFSQGKKIIAKPWNPATHGKYGKKDFIIDLQN
SMVICPAGKQQKITGKPGSLMAKFSAKLCGACPIKNKCSDSKTGRVIQIHDQEKMLQALKYYVTSPEGRQEARERVKVEHALCDHL
Blast result :
Comments
ISLpn13 is 57% aa similar to ISGvi6.
The sequence was renamed because ISLp1 is already used by another IS.
The sequence was renamed because ISLp1 is already used by another IS.
References
1] ISfinder annotation (2010)
2] Viswanathan,V.K., Kurtz,S., Pedersen,L.L., Abu-Kwaik,Y., Krcmarik,K., Mody,S. and Cianciotto,N.P. (2002) Infect. Immun. 70 (4), 1842-1852.
2] Viswanathan,V.K., Kurtz,S., Pedersen,L.L., Abu-Kwaik,Y., Krcmarik,K., Mody,S. and Cianciotto,N.P. (2002) Infect. Immun. 70 (4), 1842-1852.