ISCaa13
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010830 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 852 bp
Ends
IR Length : 14/17
IRL : GGGTGTGTCAAGAATTAAAATATAAGACAAATTAGGTATAAAAGAGTAAG
IRR : GGGCGTGTCAACAAATAGCCCACAAAGAAGAAGCAGCCAAATAAATACCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTGTTTAC | TA | GTTAACCTAA | 2 |
TTAAAATAAT | TA | GTTTAAGTAT | 2 |
DNA sequence
GGGTGTGTCAAGAATTAAAATATAAGACAAATTAGGTATAAAAGAGTAAGTTGGCTGTATGCAGAGCTAAAAATAGGAGGAATATATGCGACGCTATGCA
CTAACAGACCAGCAATGGGAAAAGATAAAAGATCTCTTGCCAGGCCGATCAGGCACAGTAGGACCGACAGCCAAGGATAATAGACTCTTTGTTGAAGCAG
TCTTATACCGTTACCGTGCTGGTATACCCTGGCGTGATTTACCTGAGCGCTTTGGAGACTTTAGAGTGGTTCATATCCGGCATGCTAGATGGAGTAAAAA
AGGTGTATGGCAAAAAGTATTTGAAGTGCTTTTACAAGAGAGCGATAATGCATATTATATGCTTGATGCTACTATTGTTAAGGCCCAACAGCATAGTGCA
GGCGCTAAAAAAAAGCCTTAACAAACAAGCGATCGGCCGTAGCCGAGCAGGATTAAGCACAAAAATACATACATTATGTGATGGTAAAGGAAGGCCTATT
GCCTTTCACCTAACAGGTGGAGAGGCACATGATTTGCAAGGAGCCGATGCATTACTGGAAAAAGTAAATGCCCCAGCTTTATTGGCTGATAAGGCTTATT
ATGCACAAAAGAGAGTATTAGCTAGATTACAAAAGAGCAATTGTGTAGCAGTCATACCATCAAAAGCCAATCATAAAAACAAGCGATCTTATGATAAGCA
GCTCTATAAATGGTGCTATTTGATCGAGCATTTCTTTGCTTACTTAAAGCAATATCGAGCTATAGCCACGCGCTATGATAATCTAGCGGTCAACTTTTTA
GGTGGTATTTATTTGGCTGCTTCTTCTTTGTGGGCTATTTGTTGACACGCCC
CTAACAGACCAGCAATGGGAAAAGATAAAAGATCTCTTGCCAGGCCGATCAGGCACAGTAGGACCGACAGCCAAGGATAATAGACTCTTTGTTGAAGCAG
TCTTATACCGTTACCGTGCTGGTATACCCTGGCGTGATTTACCTGAGCGCTTTGGAGACTTTAGAGTGGTTCATATCCGGCATGCTAGATGGAGTAAAAA
AGGTGTATGGCAAAAAGTATTTGAAGTGCTTTTACAAGAGAGCGATAATGCATATTATATGCTTGATGCTACTATTGTTAAGGCCCAACAGCATAGTGCA
GGCGCTAAAAAAAAGCCTTAACAAACAAGCGATCGGCCGTAGCCGAGCAGGATTAAGCACAAAAATACATACATTATGTGATGGTAAAGGAAGGCCTATT
GCCTTTCACCTAACAGGTGGAGAGGCACATGATTTGCAAGGAGCCGATGCATTACTGGAAAAAGTAAATGCCCCAGCTTTATTGGCTGATAAGGCTTATT
ATGCACAAAAGAGAGTATTAGCTAGATTACAAAAGAGCAATTGTGTAGCAGTCATACCATCAAAAGCCAATCATAAAAACAAGCGATCTTATGATAAGCA
GCTCTATAAATGGTGCTATTTGATCGAGCATTTCTTTGCTTACTTAAAGCAATATCGAGCTATAGCCACGCGCTATGATAATCTAGCGGTCAACTTTTTA
GGTGGTATTTATTTGGCTGCTTCTTCTTTGTGGGCTATTTGTTGACACGCCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
336 bp | 111 aa | 86 | 421 | + | No |
Description : First part of the transposase
ORF sequence :
MRRYALTDQQWEKIKDLLPGRSGTVGPTAKDNRLFVEAVLYRYRAGIPWRDLPERFGDFRVVHIRHARWSKKGVWQKVFEVLLQESDNAYYMLDATIVKA
QQHSAGAKKKP
QQHSAGAKKKP
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
684 bp | 227 aa | 162 | 845 | + | No |
Description : Second part of the transposase
ORF sequence :
DRQPRIIDSLLKQSYTVTVLVYPGVIYLSALETLEWFISGMLDGVKKVYGKKYLKCFYKRAIMHIICLMLLLLRPNSIVQALKKSLNKQAIGRSRAGLST
KIHTLCDGKGRPIAFHLTGGEAHDLQGADALLEKVNAPALLADKAYYAQKRVLARLQKSNCVAVIPSKANHKNKRSYDKQLYKWCYLIEHFFAYLKQYRA
IATRYDNLAVNFLGGIYLAASSLWAIC
KIHTLCDGKGRPIAFHLTGGEAHDLQGADALLEKVNAPALLADKAYYAQKRVLARLQKSNCVAVIPSKANHKNKRSYDKQLYKWCYLIEHFFAYLKQYRA
IATRYDNLAVNFLGGIYLAASSLWAIC
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
760 bp | 252 aa | 86 | 845 | + | Yes |
Chemistry : DDE
ORF sequence :
MRRYALTDQQWEKIKDLLPGRSGTVGPTAKDNRLFVEAVLYRYRAGIPWRDLPERFGDFRVVHIRHARWSKKGVWQKVFEVLLQESDNAYYMLDATIVKA
QQHSAGAKKPLNKQAIGRSRAGLSTKIHTLCDGKGRPIAFHLTGGEAHDLQGADALLEKVNAPALLADKAYYAQKRVLARLQKSNCVAVIPSKANHKNKR
SYDKQLYKWCYLIEHFFAYLKQYRAIATRYDNLAVNFLGGIYLAASSLWAIC
QQHSAGAKKPLNKQAIGRSRAGLSTKIHTLCDGKGRPIAFHLTGGEAHDLQGADALLEKVNAPALLADKAYYAQKRVLARLQKSNCVAVIPSKANHKNKR
SYDKQLYKWCYLIEHFFAYLKQYRAIATRYDNLAVNFLGGIYLAASSLWAIC
Blast result :
Comments
ISCaa13 is 70% aa similar to ISAli12B.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible +1 frameshift.
ISCaa13 is present in two copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible +1 frameshift.
ISCaa13 is present in two copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.