ISCaa11
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010830 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 1019 bp
Ends
IR Length : 10/11
IRL : TGTTTGGTCCCCAATAATTATGGTTATATTAGAGTAGCTACTATAAGTGA
IRR : TGTTTAGTCCCTTAGTGAAGGTATTAATATTTTTATGAAAAAGGTGAGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCCTTCTCT | ATTAGA | TCTGCTGCGA | 6 |
DNA sequence
TGTTTGGTCCCCAATAATTATGGTTATATTAGAGTAGCTACTATAAGTGATCAAAATCAAGCTAAAAAATTATGGGACAACTATTGCATAAATGCGCCAG
GACAACAGAGAAAACTCGTAGAGAAATACAGCTATCTAAAGAAAGCATAGCCACTTTAGCTAGAGGATATGGAGTTAACCGTAAAACAGTAGCTAAATGG
AAAAACAGAACTACATGCCAGGATGCAGCTATGGGGCCTAAAGTCAGGCGTTCTAAGGTATTAACCCAGCAAGAGGAAGGGGTTATTATTGCTTTTAGAA
AGCTGACTCAATTGCCCTTAGATGATTGTCTGTATACTTTACAAGAAACCATACCTCACTTATCGCGTTCTACTTTGCATCGTTGTTTTCAGCGCCATGG
CTGCCCTAAACTAGAGAAAGTACAGACTAAGGAGAAAGTGGCTAAGAAGCATTTTAAAGCGTATCCTATTGGCTACTTCCATATAGATATAGCACAAGTG
CAGACCGCCCAGGGTAAACTCTATTTGTTTGTGGCAATAGATAGAACCAGTAAATTTTGTTATGCTAGACTCTATCCCTTTGCTTCTAAATCAGCAGCCG
TAGGCTTTTTACAAGACTTGATAGCTTTTGTTCCTTATAATATAGATAAAATACTTACTGATAATGGTGTACAGTTTACAAACAGGAAAGAAGGAGAATT
AGGGCTCGAGCATATGTTTGACCGCATTTGTGAGCAAGAAGGCATCGTTCACAGAAGAACGCAGCTGGCACATCCATGGACCAATGGCCAGGTAGAGCGC
ATGAACAGAACAATCAAAGAGGCTACTGTGCAAAGCTATTATTATAGTAGCCATCAGCAGTTAGAGCGGCACTTAAATGACTTCTTGTTAGCTTATAATT
TTGCTCGTACACTTAAGGCACTCAAGGGCAAAACTCCTTGGCAATTGATAGAGGAACAATGGCAAAAAAACCTCACCTTTTTCATAAAAATATTAATACC
TTCACTAAGGGACTAAACA
GACAACAGAGAAAACTCGTAGAGAAATACAGCTATCTAAAGAAAGCATAGCCACTTTAGCTAGAGGATATGGAGTTAACCGTAAAACAGTAGCTAAATGG
AAAAACAGAACTACATGCCAGGATGCAGCTATGGGGCCTAAAGTCAGGCGTTCTAAGGTATTAACCCAGCAAGAGGAAGGGGTTATTATTGCTTTTAGAA
AGCTGACTCAATTGCCCTTAGATGATTGTCTGTATACTTTACAAGAAACCATACCTCACTTATCGCGTTCTACTTTGCATCGTTGTTTTCAGCGCCATGG
CTGCCCTAAACTAGAGAAAGTACAGACTAAGGAGAAAGTGGCTAAGAAGCATTTTAAAGCGTATCCTATTGGCTACTTCCATATAGATATAGCACAAGTG
CAGACCGCCCAGGGTAAACTCTATTTGTTTGTGGCAATAGATAGAACCAGTAAATTTTGTTATGCTAGACTCTATCCCTTTGCTTCTAAATCAGCAGCCG
TAGGCTTTTTACAAGACTTGATAGCTTTTGTTCCTTATAATATAGATAAAATACTTACTGATAATGGTGTACAGTTTACAAACAGGAAAGAAGGAGAATT
AGGGCTCGAGCATATGTTTGACCGCATTTGTGAGCAAGAAGGCATCGTTCACAGAAGAACGCAGCTGGCACATCCATGGACCAATGGCCAGGTAGAGCGC
ATGAACAGAACAATCAAAGAGGCTACTGTGCAAAGCTATTATTATAGTAGCCATCAGCAGTTAGAGCGGCACTTAAATGACTTCTTGTTAGCTTATAATT
TTGCTCGTACACTTAAGGCACTCAAGGGCAAAACTCCTTGGCAATTGATAGAGGAACAATGGCAAAAAAACCTCACCTTTTTCATAAAAATATTAATACC
TTCACTAAGGGACTAAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
945 bp | 314 aa | 72 | 1016 | + | No |
Chemistry : DDE
ORF sequence :
MGQLLHKCARTTEKTRREIQLSKESIATLARGYGVNRKTVAKWKNRTTCQDAAMGPKVRRSKVLTQQEEGVIIAFRKLTQLPLDDCLYTLQETIPHLSRS
TLHRCFQRHGCPKLEKVQTKEKVAKKHFKAYPIGYFHIDIAQVQTAQGKLYLFVAIDRTSKFCYARLYPFASKSAAVGFLQDLIAFVPYNIDKILTDNGV
QFTNRKEGELGLEHMFDRICEQEGIVHRRTQLAHPWTNGQVERMNRTIKEATVQSYYYSSHQQLERHLNDFLLAYNFARTLKALKGKTPWQLIEEQWQKN
LTFFIKILIPSLRD
TLHRCFQRHGCPKLEKVQTKEKVAKKHFKAYPIGYFHIDIAQVQTAQGKLYLFVAIDRTSKFCYARLYPFASKSAAVGFLQDLIAFVPYNIDKILTDNGV
QFTNRKEGELGLEHMFDRICEQEGIVHRRTQLAHPWTNGQVERMNRTIKEATVQSYYYSSHQQLERHLNDFLLAYNFARTLKALKGKTPWQLIEEQWQKN
LTFFIKILIPSLRD
Blast result :
Comments
ISCaa11 is 71% aa similar to ISNe2.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.