ISCaa11

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010830 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 1019 bp

Ends


IR Length : 10/11

IRL : TGTTTGGTCCCCAATAATTATGGTTATATTAGAGTAGCTACTATAAGTGA
IRR : TGTTTAGTCCCTTAGTGAAGGTATTAATATTTTTATGAAAAAGGTGAGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TCCCTTCTCTATTAGATCTGCTGCGA6

DNA sequence

TGTTTGGTCCCCAATAATTATGGTTATATTAGAGTAGCTACTATAAGTGATCAAAATCAAGCTAAAAAATTATGGGACAACTATTGCATAAATGCGCCAG
GACAACAGAGAAAACTCGTAGAGAAATACAGCTATCTAAAGAAAGCATAGCCACTTTAGCTAGAGGATATGGAGTTAACCGTAAAACAGTAGCTAAATGG
AAAAACAGAACTACATGCCAGGATGCAGCTATGGGGCCTAAAGTCAGGCGTTCTAAGGTATTAACCCAGCAAGAGGAAGGGGTTATTATTGCTTTTAGAA
AGCTGACTCAATTGCCCTTAGATGATTGTCTGTATACTTTACAAGAAACCATACCTCACTTATCGCGTTCTACTTTGCATCGTTGTTTTCAGCGCCATGG
CTGCCCTAAACTAGAGAAAGTACAGACTAAGGAGAAAGTGGCTAAGAAGCATTTTAAAGCGTATCCTATTGGCTACTTCCATATAGATATAGCACAAGTG
CAGACCGCCCAGGGTAAACTCTATTTGTTTGTGGCAATAGATAGAACCAGTAAATTTTGTTATGCTAGACTCTATCCCTTTGCTTCTAAATCAGCAGCCG
TAGGCTTTTTACAAGACTTGATAGCTTTTGTTCCTTATAATATAGATAAAATACTTACTGATAATGGTGTACAGTTTACAAACAGGAAAGAAGGAGAATT
AGGGCTCGAGCATATGTTTGACCGCATTTGTGAGCAAGAAGGCATCGTTCACAGAAGAACGCAGCTGGCACATCCATGGACCAATGGCCAGGTAGAGCGC
ATGAACAGAACAATCAAAGAGGCTACTGTGCAAAGCTATTATTATAGTAGCCATCAGCAGTTAGAGCGGCACTTAAATGACTTCTTGTTAGCTTATAATT
TTGCTCGTACACTTAAGGCACTCAAGGGCAAAACTCCTTGGCAATTGATAGAGGAACAATGGCAAAAAAACCTCACCTTTTTCATAAAAATATTAATACC
TTCACTAAGGGACTAAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
945 bp314 aa721016+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGQLLHKCARTTEKTRREIQLSKESIATLARGYGVNRKTVAKWKNRTTCQDAAMGPKVRRSKVLTQQEEGVIIAFRKLTQLPLDDCLYTLQETIPHLSRS
TLHRCFQRHGCPKLEKVQTKEKVAKKHFKAYPIGYFHIDIAQVQTAQGKLYLFVAIDRTSKFCYARLYPFASKSAAVGFLQDLIAFVPYNIDKILTDNGV
QFTNRKEGELGLEHMFDRICEQEGIVHRRTQLAHPWTNGQVERMNRTIKEATVQSYYYSSHQQLERHLNDFLLAYNFARTLKALKGKTPWQLIEEQWQKN
LTFFIKILIPSLRD

 

Blast result :
Comments
ISCaa11 is 71% aa similar to ISNe2.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.