ISCaa15
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010830 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 1434 bp
Ends
IR Length : 18
IRL : GGGGCTGTTGAAAAAGTAATTAAGAGTTTTAAATTAAGGTCACAGCCTAA
IRR : GGGGCTGTTGAAAAAGTATATGTTAAAAATATTCTATTAGGCATGTTAAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAAACAAAC | CACT | GTCATTTAAG | 4 |
GCTATAAAAA | GGTT | GTTTTATTTT | 4 |
AAAATCTAAT | GGTTGTTTTT | 0 |
DNA sequence
GGGGCTGTTGAAAAAGTAATTAAGAGTTTTAAATTAAGGTCACAGCCTAATTTTAGCGTATATGTTATGGCAGAATAAAAATACTAATTATAGCACGAGC
CCAGTAGATGATAATCACTTACTTTCTAAAGTCAATAAGTATATAGATCTCTCCTTTACCCATCAGTTAGTTATAGCCTCTTATAATAGCAAGCATGGGC
GTCCCTCGATAGACCCAGAGATTTTCTTTAGGATGCTTATGATTAGCTATTTTTATAACATTAACTCTGATAGAAGAGTATGTCAAGAGATACGCTACAA
TGTAGCTTATAGATGGTTTTGTAAGCTTGGATTAGAAGACAAGGTGCCTGATCACTCTTACTTAAGTAGAACCAGAAACAGATTTGGCGAAAAAGTATTT
GAAGCGCTTTTTACTACTATACTCAATTTATGTCGAAAGCATGGCTTGTTGGAGAGTAATAGTGTGATGACAGATAGCACATTAATCAAAGCTAATGCAT
CACTAAATTCTTTAACTCCTATCGAAGCTAAAGCAGCAGCCTATGAGAAAGTAGCAAGAAAAGCTGCTATAAATAAGCTTGGGCCGCCTGCTAGTAGGAG
TATAAGCAACAGCACGCATATAAGCAAAACAGATAAAGATGCAAGCTTGGCTCAAAAGGAAGGGAGCCCCAGAGAGTTAAAATATAAAGTTCACAACTCA
ATTGATGCATTGAGTAGAGTAATAATTGATACAAAGGTTACAACAGGCAAGACCCATGATTCTCAAGTGTATATAGAGAGGCTAAATCACATTAGAGGAA
AGTATGCTCTAACTATAAAAGAAGCTATTGCAGATAGAGCTTACGGATCAAGAGCGATCATAGAGACTTTACAGAAAGAAGGTATAGTGACCTATATACC
ACTCTTTAGCACTAAAAGTGGTAGGTCTGTGCAAGAAGCTTATCAAGCTGGGTTTGTCTATCAAAAACAGAAGGATCGTTTTGTATGTCCTGAAGGCCAG
TATTTAAACCCTTATGGTTATATGGCTAATGAGAGTAAGTATTATAGGTCAAAATCATCCATTTGCGCTATGTGCAAGCAAAAAGATGCTTGTATTGCTT
CAGCTAAGAAAAGTAGGCCATTCACAAAATATCTTATCAGAAGCATCCATCAAGAGTTGTTTGATAAGACTCTTGAAGCTATGCAAGAACCAACATTCAT
TGGTAAGCTCAAAGAAAGGATGTGGAAAATAGAAGGTATTTTCGCTGAAGCTAAGCAATTACATGGGTTAGGTAAAGCTCGCTATAGGAGTTTGGAAAGA
GTGCAAATACAAGCATATATGATAGCTGTTGTACAAAATATTAAAAGAATAATTAAGCAGCTTTTTTATGTCTTTCTTCATTTCCTTAACATGCCTAATA
GAATATTTTTAACATATACTTTTTCAACAGCCCC
CCAGTAGATGATAATCACTTACTTTCTAAAGTCAATAAGTATATAGATCTCTCCTTTACCCATCAGTTAGTTATAGCCTCTTATAATAGCAAGCATGGGC
GTCCCTCGATAGACCCAGAGATTTTCTTTAGGATGCTTATGATTAGCTATTTTTATAACATTAACTCTGATAGAAGAGTATGTCAAGAGATACGCTACAA
TGTAGCTTATAGATGGTTTTGTAAGCTTGGATTAGAAGACAAGGTGCCTGATCACTCTTACTTAAGTAGAACCAGAAACAGATTTGGCGAAAAAGTATTT
GAAGCGCTTTTTACTACTATACTCAATTTATGTCGAAAGCATGGCTTGTTGGAGAGTAATAGTGTGATGACAGATAGCACATTAATCAAAGCTAATGCAT
CACTAAATTCTTTAACTCCTATCGAAGCTAAAGCAGCAGCCTATGAGAAAGTAGCAAGAAAAGCTGCTATAAATAAGCTTGGGCCGCCTGCTAGTAGGAG
TATAAGCAACAGCACGCATATAAGCAAAACAGATAAAGATGCAAGCTTGGCTCAAAAGGAAGGGAGCCCCAGAGAGTTAAAATATAAAGTTCACAACTCA
ATTGATGCATTGAGTAGAGTAATAATTGATACAAAGGTTACAACAGGCAAGACCCATGATTCTCAAGTGTATATAGAGAGGCTAAATCACATTAGAGGAA
AGTATGCTCTAACTATAAAAGAAGCTATTGCAGATAGAGCTTACGGATCAAGAGCGATCATAGAGACTTTACAGAAAGAAGGTATAGTGACCTATATACC
ACTCTTTAGCACTAAAAGTGGTAGGTCTGTGCAAGAAGCTTATCAAGCTGGGTTTGTCTATCAAAAACAGAAGGATCGTTTTGTATGTCCTGAAGGCCAG
TATTTAAACCCTTATGGTTATATGGCTAATGAGAGTAAGTATTATAGGTCAAAATCATCCATTTGCGCTATGTGCAAGCAAAAAGATGCTTGTATTGCTT
CAGCTAAGAAAAGTAGGCCATTCACAAAATATCTTATCAGAAGCATCCATCAAGAGTTGTTTGATAAGACTCTTGAAGCTATGCAAGAACCAACATTCAT
TGGTAAGCTCAAAGAAAGGATGTGGAAAATAGAAGGTATTTTCGCTGAAGCTAAGCAATTACATGGGTTAGGTAAAGCTCGCTATAGGAGTTTGGAAAGA
GTGCAAATACAAGCATATATGATAGCTGTTGTACAAAATATTAAAAGAATAATTAAGCAGCTTTTTTATGTCTTTCTTCATTTCCTTAACATGCCTAATA
GAATATTTTTAACATATACTTTTTCAACAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1373 bp | 457 aa | 62 | 1434 | + | No |
Chemistry : DDE
ORF sequence :
MLWQNKNTNYSTSPVDDNHLLSKVNKYIDLSFTHQLVIASYNSKHGRPSIDPEIFFRMLMISYFYNINSDRRVCQEIRYNVAYRWFCKLGLEDKVPDHSY
LSRTRNRFGEKVFEALFTTILNLCRKHGLLESNSVMTDSTLIKANASLNSLTPIEAKAAAYEKVARKAAINKLGPPASRSISNSTHISKTDKDASLAQKE
GSPRELKYKVHNSIDALSRVIIDTKVTTGKTHDSQVYIERLNHIRGKYALTIKEAIADRAYGSRAIIETLQKEGIVTYIPLFSTKSGRSVQEAYQAGFVY
QKQKDRFVCPEGQYLNPYGYMANESKYYRSKSSICAMCKQKDACIASAKKSRPFTKYLIRSIHQELFDKTLEAMQEPTFIGKLKERMWKIEGIFAEAKQL
HGLGKARYRSLERVQIQAYMIAVVQNIKRIIKQLFYVFLHFLNMPNRIFLTYTFSTA
LSRTRNRFGEKVFEALFTTILNLCRKHGLLESNSVMTDSTLIKANASLNSLTPIEAKAAAYEKVARKAAINKLGPPASRSISNSTHISKTDKDASLAQKE
GSPRELKYKVHNSIDALSRVIIDTKVTTGKTHDSQVYIERLNHIRGKYALTIKEAIADRAYGSRAIIETLQKEGIVTYIPLFSTKSGRSVQEAYQAGFVY
QKQKDRFVCPEGQYLNPYGYMANESKYYRSKSSICAMCKQKDACIASAKKSRPFTKYLIRSIHQELFDKTLEAMQEPTFIGKLKERMWKIEGIFAEAKQL
HGLGKARYRSLERVQIQAYMIAVVQNIKRIIKQLFYVFLHFLNMPNRIFLTYTFSTA
Blast result :
Comments
ISCaa15 is 59% aa similar to ISLlo2.
ISCaa15 is present in three complete copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
There is no STOP codon, the transposase use the first STOP codon after the end of the IRR. The transposase in the database is cut at the end of the IS.
ISCaa15 is present in three complete copies in the Candidatus Amoebophilus asiaticus 5a2 genome.
There is no STOP codon, the transposase use the first STOP codon after the end of the IRR. The transposase in the database is cut at the end of the IS.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.