ISCaa16

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010830 ND Candidatus Amoebophilus
Candidatus Amoebophilus asiaticus 5a2
DNA section
IS Length : 837 bp

Ends


IR Length : 18

IRL : GGGCACTGTTGCAAATAGTAGTTAAGGGGGGTAAATTGTATTGAGTTAAC
IRR : GGGCACTGTTGCAAATAGAAAAAGAAGTTAAGGTTGTGAGGTGAGAGAAG

Insertion site


Left flankDirect repeatRight flankDR Length
CGTCTATCTGTATCGAGCAT0

DNA sequence

GGGCACTGTTGCAAATAGTAGTTAAGGGGGGTAAATTGTATTGAGTTAACCAAAAAGTAAGGAAATGAACATCTTTAAAAGATGTCACTTCAAATACGAT
ATAATCATATGGGCAGTAAGATGGTATTGCAAGTATGGAATAAGCTATCGTGATTTAGAAGAAATGCTCTCTGAAAGAGGAGTTCAAGTAGATCACTGCA
CCATTTATAGGTGGGTTCAGTTCTACGCCCCCAAGATATTAGATAAGCTCAAATGGTATTGGAAGCCTACTCGGGGCTATAGCTGGCGTGTAAATGAAAC
TTATATTAAAGTGAAGGGTAAATGGGTATACCTTTATAGAGCTTTAGGTCAAGCAGATAATACCATAGATTTTTATCTATCCACTACCAGAAATAGTAAT
GCAACTAAGAGGTTCTTAAGTAAAGCATTAAGGTCTATTCCCGCATATTCTAGGCCTAAAACTATCAACACTGATAAAACCCCTGCCTACGGAAAGTCCA
TAAATGAGCTAAAACTAGCCGGTAAATGTCCTCCAGATTTAGCACACCGGCAAGTCAAATATCTCAATAATCTAATAGAATCGACCCATGGTAAGCTTAA
GAGGTTAATTAATCCAACATTAGGCTTTAAATCCATGAAGACAGCATGGGCTACCATAAAAGGCTTTGAGCTAATGCGCATCTTTAAGAAGGGGCGTTTT
AATGCATGGAAATATGGACAAGGTATTTTGGGAGAAATTAATATTATCACCCATAATTTATTAGCTCTTTAAGTCCTCCAATCAATCCTTCTCTCACCTC
ACAACCTTAACTTCTTTTTCTATTTGCAACAGTGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
708 bp235 aa65772+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIFKRCHFKYDIIIWAVRWYCKYGISYRDLEEMLSERGVQVDHCTIYRWVQFYAPKILDKLKWYWKPTRGYSWRVNETYIKVKGKWVYLYRALGQADNT
IDFYLSTTRNSNATKRFLSKALRSIPAYSRPKTINTDKTPAYGKSINELKLAGKCPPDLAHRQVKYLNNLIESTHGKLKRLINPTLGFKSMKTAWATIKG
FELMRIFKKGRFNAWKYGQGILGEINIITHNLLAL

 

Blast result :
Comments
ISCaa16 shares 58% amino acid identity with IS6100 from Mycobacterium fortuitum.
References
1] Schmitz-Esser S, Tischler P, Arnold R, Montanaro J, Wagner M, Rattei T, Horn M. (2010) J Bacteriol., 192(4):1045-1057.