ISSgl1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007712 ND Sodalis glossinidius
Sodalis glossinidius morsitans
DNA section
IS Length : 1053 bp

Ends


IR Length : 22/25

IRL : GGCTTTGTTAAATAAATATAACTTTTAGGTGATCGTCTGCTCAGATCACT
IRR : GGCTTTGTTGAATAAATCAGAACTTGTGACTACGCCCCCCTAGCAGATCG

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTCAGGCGTCCCGGCACC0
GCCTCTGAATAAAAACAGCT0
AGGATTCCAACCTGAGATTT0
AGGATTCCAAATTTCGTGTA0

DNA sequence

GGCTTTGTTAAATAAATATAACTTTTAGGTGATCGTCTGCTCAGATCACTACCGTCATTTCAACATCTGCACTCCATGGCAAAGCAAAAGTTTAAAATAA
CCAACTGGTCCACTTACAACAAAGCTCTCAAGCAGCGCGGGGCTCTGACGATATGGCTGGATGAGTCGGCAATTGTTGCATGGACGGAAAAAACAACGCC
TGAACAGCGTGGCCAGCCGCTTCACTACGCAGATATGGCTATCACCACTGTTCTGATGATGAAACGCGTGTTTGGCCTTTCGTTAAGGGCTTTACAGGGC
TTCGTTGACGCCATTTTTAAACTGATGGGGCTGCCGCTAAGATGCCCAGACTACTCGCTGCTCAGCAAGCGAGCAAAGACAGTTAAAATCAGCATAAAAA
CGCCGACCCGTGGTGAAATCTCACCTCTAGTCATTGACGGAACCGGCCTGAAGGTCTTTGGCGAAGGCGAATGGAAAGTCCGGCAGCATGGTGCCGACAG
ACGGAGGGTGTGGCGTAAGCTGCATATGGCCGCAGACAGTGTAACGCATGAGATTATCTGTGCTGACTTATCGCTCAGCGGTACGACGGATGCTCAGGCC
CTACCAGCTCTGATAAACCAGACCCACCGGAAAATCAGGGAAGCGTCGGCTGATGGCGCTTACGATACCCGATACTGTCATGATGCTCTGCTGAGGAAGA
AAATAAGGCCTCTTATTCCTCCACGAGGTGGGGCACAATATTGGCCAGACCGATACCATGAGCGTAACTACGCCGTTGCGAATCAGCGTCTAAGCGGCAG
TAACGATGTATGGAAAAAGCAAGTGGGCTATCATCGACGCTCAGTGGCTGAAACAGCTATATTCCGGTTCAAAACGCTTATGGGCGATCATCTAAGTCTG
CGTGACTATGATGCGCAGGTAGGTGAGGCAATGGCGATGGTCAAAGCGCTTAACAAAATGACGCTGTTAGGAATGCCGAACAGCATCCGGATCGCATCAC
AATCGATCTGCTAGGGGGGCGTAGTCACAAGTTCTGATTTATTCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa761014+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKQKFKITNWSTYNKALKQRGALTIWLDESAIVAWTEKTTPEQRGQPLHYADMAITTVLMMKRVFGLSLRALQGFVDAIFKLMGLPLRCPDYSLLSKRA
KTVKISIKTPTRGEISPLVIDGTGLKVFGEGEWKVRQHGADRRRVWRKLHMAADSVTHEIICADLSLSGTTDAQALPALINQTHRKIREASADGAYDTRY
CHDALLRKKIRPLIPPRGGAQYWPDRYHERNYAVANQRLSGSNDVWKKQVGYHRRSVAETAIFRFKTLMGDHLSLRDYDAQVGEAMAMVKALNKMTLLGM
PNSIRIASQSIC

 

Blast result :
Comments
ISSgl1 is 92% aa similar to ISEcl3.
References
1] ISfinder annotation (2010)

2] Toh,H., Weiss,B.L., Perkin,S.A., Yamashita,A., Oshima,K., Hattori,M. and Aksoy,S. (2006) Genome Res. 16 (2), 149-156

3] Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. (2004) Direct submission GenBank.