ISSgl1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007712 | ND | Sodalis glossinidius | Sodalis glossinidius morsitans |
DNA section
IS Length : 1053 bp
Ends
IR Length : 22/25
IRL : GGCTTTGTTAAATAAATATAACTTTTAGGTGATCGTCTGCTCAGATCACT
IRR : GGCTTTGTTGAATAAATCAGAACTTGTGACTACGCCCCCCTAGCAGATCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTCAGGCG | TCCCGGCACC | 0 | |
GCCTCTGAAT | AAAAACAGCT | 0 | |
AGGATTCCAA | CCTGAGATTT | 0 | |
AGGATTCCAA | ATTTCGTGTA | 0 |
DNA sequence
GGCTTTGTTAAATAAATATAACTTTTAGGTGATCGTCTGCTCAGATCACTACCGTCATTTCAACATCTGCACTCCATGGCAAAGCAAAAGTTTAAAATAA
CCAACTGGTCCACTTACAACAAAGCTCTCAAGCAGCGCGGGGCTCTGACGATATGGCTGGATGAGTCGGCAATTGTTGCATGGACGGAAAAAACAACGCC
TGAACAGCGTGGCCAGCCGCTTCACTACGCAGATATGGCTATCACCACTGTTCTGATGATGAAACGCGTGTTTGGCCTTTCGTTAAGGGCTTTACAGGGC
TTCGTTGACGCCATTTTTAAACTGATGGGGCTGCCGCTAAGATGCCCAGACTACTCGCTGCTCAGCAAGCGAGCAAAGACAGTTAAAATCAGCATAAAAA
CGCCGACCCGTGGTGAAATCTCACCTCTAGTCATTGACGGAACCGGCCTGAAGGTCTTTGGCGAAGGCGAATGGAAAGTCCGGCAGCATGGTGCCGACAG
ACGGAGGGTGTGGCGTAAGCTGCATATGGCCGCAGACAGTGTAACGCATGAGATTATCTGTGCTGACTTATCGCTCAGCGGTACGACGGATGCTCAGGCC
CTACCAGCTCTGATAAACCAGACCCACCGGAAAATCAGGGAAGCGTCGGCTGATGGCGCTTACGATACCCGATACTGTCATGATGCTCTGCTGAGGAAGA
AAATAAGGCCTCTTATTCCTCCACGAGGTGGGGCACAATATTGGCCAGACCGATACCATGAGCGTAACTACGCCGTTGCGAATCAGCGTCTAAGCGGCAG
TAACGATGTATGGAAAAAGCAAGTGGGCTATCATCGACGCTCAGTGGCTGAAACAGCTATATTCCGGTTCAAAACGCTTATGGGCGATCATCTAAGTCTG
CGTGACTATGATGCGCAGGTAGGTGAGGCAATGGCGATGGTCAAAGCGCTTAACAAAATGACGCTGTTAGGAATGCCGAACAGCATCCGGATCGCATCAC
AATCGATCTGCTAGGGGGGCGTAGTCACAAGTTCTGATTTATTCAACAAAGCC
CCAACTGGTCCACTTACAACAAAGCTCTCAAGCAGCGCGGGGCTCTGACGATATGGCTGGATGAGTCGGCAATTGTTGCATGGACGGAAAAAACAACGCC
TGAACAGCGTGGCCAGCCGCTTCACTACGCAGATATGGCTATCACCACTGTTCTGATGATGAAACGCGTGTTTGGCCTTTCGTTAAGGGCTTTACAGGGC
TTCGTTGACGCCATTTTTAAACTGATGGGGCTGCCGCTAAGATGCCCAGACTACTCGCTGCTCAGCAAGCGAGCAAAGACAGTTAAAATCAGCATAAAAA
CGCCGACCCGTGGTGAAATCTCACCTCTAGTCATTGACGGAACCGGCCTGAAGGTCTTTGGCGAAGGCGAATGGAAAGTCCGGCAGCATGGTGCCGACAG
ACGGAGGGTGTGGCGTAAGCTGCATATGGCCGCAGACAGTGTAACGCATGAGATTATCTGTGCTGACTTATCGCTCAGCGGTACGACGGATGCTCAGGCC
CTACCAGCTCTGATAAACCAGACCCACCGGAAAATCAGGGAAGCGTCGGCTGATGGCGCTTACGATACCCGATACTGTCATGATGCTCTGCTGAGGAAGA
AAATAAGGCCTCTTATTCCTCCACGAGGTGGGGCACAATATTGGCCAGACCGATACCATGAGCGTAACTACGCCGTTGCGAATCAGCGTCTAAGCGGCAG
TAACGATGTATGGAAAAAGCAAGTGGGCTATCATCGACGCTCAGTGGCTGAAACAGCTATATTCCGGTTCAAAACGCTTATGGGCGATCATCTAAGTCTG
CGTGACTATGATGCGCAGGTAGGTGAGGCAATGGCGATGGTCAAAGCGCTTAACAAAATGACGCTGTTAGGAATGCCGAACAGCATCCGGATCGCATCAC
AATCGATCTGCTAGGGGGGCGTAGTCACAAGTTCTGATTTATTCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
939 bp | 312 aa | 76 | 1014 | + | No |
Chemistry : DDE
ORF sequence :
MAKQKFKITNWSTYNKALKQRGALTIWLDESAIVAWTEKTTPEQRGQPLHYADMAITTVLMMKRVFGLSLRALQGFVDAIFKLMGLPLRCPDYSLLSKRA
KTVKISIKTPTRGEISPLVIDGTGLKVFGEGEWKVRQHGADRRRVWRKLHMAADSVTHEIICADLSLSGTTDAQALPALINQTHRKIREASADGAYDTRY
CHDALLRKKIRPLIPPRGGAQYWPDRYHERNYAVANQRLSGSNDVWKKQVGYHRRSVAETAIFRFKTLMGDHLSLRDYDAQVGEAMAMVKALNKMTLLGM
PNSIRIASQSIC
KTVKISIKTPTRGEISPLVIDGTGLKVFGEGEWKVRQHGADRRRVWRKLHMAADSVTHEIICADLSLSGTTDAQALPALINQTHRKIREASADGAYDTRY
CHDALLRKKIRPLIPPRGGAQYWPDRYHERNYAVANQRLSGSNDVWKKQVGYHRRSVAETAIFRFKTLMGDHLSLRDYDAQVGEAMAMVKALNKMTLLGM
PNSIRIASQSIC
Blast result :
Comments
ISSgl1 is 92% aa similar to ISEcl3.
References
1] ISfinder annotation (2010)
2] Toh,H., Weiss,B.L., Perkin,S.A., Yamashita,A., Oshima,K., Hattori,M. and Aksoy,S. (2006) Genome Res. 16 (2), 149-156
3] Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. (2004) Direct submission GenBank.
2] Toh,H., Weiss,B.L., Perkin,S.A., Yamashita,A., Oshima,K., Hattori,M. and Aksoy,S. (2006) Genome Res. 16 (2), 149-156
3] Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. (2004) Direct submission GenBank.