ISGau7

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP009153 ND Gemmatimonas aurantiaca
Gemmatimonas aurantiaca T-27
DNA section
IS Length : 2510 bp

Ends


IR Length : 50/56

IRL : CCTCGGTGGACACCCAAATCCGGCCACCAGTCGACACCTGAAAACCGGCC
IRR : CCTCGGTGGACACCTCAAATCCGGCCACTGATCGACACTTCAAAACCGGC

Insertion site


Left flankDirect repeatRight flankDR Length
ACACGGCGAGCAACAACCACGATT4

DNA sequence

CCTCGGTGGACACCCAAATCCGGCCACCAGTCGACACCTGAAAACCGGCCACCACAGGCGAGCTGAGGCGTAGCCCGGTGGGGCGTTCCGAGAGGGACGT
TTCCCGCCATGAGCAACGTCTTGGACGAGACCAAACAGCAGCAGGTGATTGCGTTGGGGCGACTGGGGTGGTCGCTCCGGCGCATCGAGGCGGCGACCGG
CGTCCGCCGCGAGACGATCAGTGGGTATTTGAAGGCGACCGGCGTCGCAGTCCGCCGGCGCGGCGGCCGGCCGACGCAGTGGCCACCACCAAATCCGGCC
ACCACGGGCGAGGTGTCCACCGACCCGGTGTCCATCGGGACCGTGGTGGCCACGGTCGCGCGGCCGGGCCGGGCGCCGACGGCGAGCGCCTGCGAGCCGT
ACCGCGAGCAGATTGTGGAGGCCGTCCGCCGCGGCCGGAACGCGATGGCGATCTGGCAGGACCTCGTCGACCAGCACGGCTTCGACGGCCGCTATGCGAG
TGTGCGGCGCTTCGTCGGTCGCCGGCGCGTGACGTCGCCCGAGCCGGCGGGGATCATCGAGACCGCCCCCGGCGAAGAAGCCCAAGTCGATTACGGCGAA
GGGCCGATGGTGCGCGATCCCGTGAGCGGCAAATACAAACGCACGCGGCTCTTCGTGCTGACGCTCGGCTACTCGCGCAAATCCGTGCGACTGCTCACCT
GGCGCTCCAGTAGTCAGCGGTGGGCGGCGCTGCATGAAGAGGCGTTTCGTCGGCTCGGCGGCACGCCCCGCGTGATTGTCCTCGACAATCTCCGTGAGGG
CGTGCTCACGCCCGATGTGTACGACGCCCAGCTCAATCCGCTCTATCGCGATGTGCTCGCGCACTACGGCGTGGTCGCGCTCCCGGGTCGCGTCCGCGAT
CCAGATCGGAAGGGGAAAGTGGAGTCGGGGATCGGCCACACGCAGCGCACGCCGCTCAAGGGGCTGCGTTTCGAGACCCTCGACGCCGCGCAAGCGTACC
TCGATCAGTGGGAGCTCCGCTGGGCGGACACGCGCATCCATGGCACCACGAAACGCCAGGTCAGCGTGATGTTTTCGGAGGAGCGCCCGCAGCTGCAGTC
GCTGCCCCTGGAACTCTTTCGCTACTACCGGCACGGCACGCGCGTGGTGCATCTCGACGGCTGTGTGGAAGTCGAGGCCGCGTACTACAGCGTGCCGCCG
GGCTGGATCGGGCAGCAAGTCGTCGTGCAGTGGGATGACCTCCACGTGCGGGTGCTCGATCCCAAGACGAGCGGGCTGCTGCGCGAACATCTGCGCACAC
GCCGTGGGCATCATCGCGTGGCCGATGCCGACCGTCCGACTCGCACACCGGCGAAGACGCTCGCCCTCCTCGATGTCGCGCGCAAAGCCGGGCCATCGAT
CAGCGCCGTGTGTGAGCACATCCACCGTACCGAGGGCGTCCTCGCGCCGCGTCGCATCCTCGGCGTGCTCGCGCTCGCGCGCAAACACGGGCCGGCCCTC
ACGGAGGACGCGGCCCATTTCGCGCTCGAAGCCGGCGCGCCGTCCTATCGCTTCCTCCGGCGCTATCTCGAACGCGTGAAGCTGCCAGCCACGGCACTGA
AGCAGATCGACCCGCTCATCCGCCATCTCACCGACTACCGCGCCCTCATCGAACAGCGAGCTGCCGCCTCATGAACGTCACCGAACTGGATCGCGCCCTC
CGCAAGCTCCGCCTCTCCGGCATGGCGGACGTACTCGAAACGCGCCTGCGCCATGCGCAGGCCGAGCGGCTGCCGCCGCTCGATCTCGTCGCGATGCTCG
TCAATGACGAACTGCAACGGCGCCAGGATCGCCTGCTCGAACGGCGGCGTGTACAGGCCCGCTTCCGCGATCCGAACCGCTCGCTCGACTCGTTTGATTT
TGCGTTTAACAAGAAGATGAATCGCGCGCTGATTTTTGAGCTCGCGACCGGCCGCTTCATCACGCAGCGCGAAGATCTGCTGCTCGTCGGTTCACCCGGT
ACGGGAAAGAGTCACGTGGCGCAGGCGCTCGGCCACGCGGCGATTCAGCAAGGCCATCGCGTGCTCTATCGCGAAGCGCATCTGCTCCTCGAAGAGCTCA
CCGACGCCACGCTCGACGGGACCCGGAAGGAGGTCTTCACGGAACTCAGCACCGTCCCACTCCTGATCATCGATGATCTCGGCATGCGAAAGCTGCCGCC
CACCGCCGCCGAAGATCTGCTCGAGCTGATCATGCGCCGCTATGAACGCGCCTCGACGATCCTCACCGCGAATCGCCCCGTCGATGACTGGGGCAAGCTG
CTCGGCGACACCGCCGCCGTCACGGCGCTGCTCGACCGGCTCCTCCATCACGCCCACGTGATCACTTGCGGCCCCCGGAGCTGGCGGACCAAACTCCATG
GGGCGACCGACACCACCGTCACGCCGACCCGATAACCAGCCTCAGCCTGTCGTCGTGGTGGCCGGTTTTGAAGTGTCGATCAGTGGCCGGATTTGAGGTG
TCCACCGAGG
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1566 bp521 aa1091674+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSNVLDETKQQQVIALGRLGWSLRRIEAATGVRRETISGYLKATGVAVRRRGGRPTQWPPPNPATTGEVSTDPVSIGTVVATVARPGRAPTASACEPYRE
QIVEAVRRGRNAMAIWQDLVDQHGFDGRYASVRRFVGRRRVTSPEPAGIIETAPGEEAQVDYGEGPMVRDPVSGKYKRTRLFVLTLGYSRKSVRLLTWRS
SSQRWAALHEEAFRRLGGTPRVIVLDNLREGVLTPDVYDAQLNPLYRDVLAHYGVVALPGRVRDPDRKGKVESGIGHTQRTPLKGLRFETLDAAQAYLDQ
WELRWADTRIHGTTKRQVSVMFSEERPQLQSLPLELFRYYRHGTRVVHLDGCVEVEAAYYSVPPGWIGQQVVVQWDDLHVRVLDPKTSGLLREHLRTRRG
HHRVADADRPTRTPAKTLALLDVARKAGPSISAVCEHIHRTEGVLAPRRILGVLALARKHGPALTEDAAHFALEAGAPSYRFLRRYLERVKLPATALKQI
DPLIRHLTDYRALIEQRAAAS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
765 bp254 aa16712435+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MNVTELDRALRKLRLSGMADVLETRLRHAQAERLPPLDLVAMLVNDELQRRQDRLLERRRVQARFRDPNRSLDSFDFAFNKKMNRALIFELATGRFITQR
EDLLLVGSPGTGKSHVAQALGHAAIQQGHRVLYREAHLLLEELTDATLDGTRKEVFTELSTVPLLIIDDLGMRKLPPTAAEDLLELIMRRYERASTILTA
NRPVDDWGKLLGDTAAVTALLDRLLHHAHVITCGPRSWRTKLHGATDTTVTPTR

 

Blast result :
Comments
ISGau7 is 58%(ORFA, the Transposase) and 74% (ORFB) aa similar to ISCARN65.
References
1] Ichikawa, N. (2010) Direct submission

2] Oguchi,A., Ankai,A., Yashiro,I., Takahashi,M., Terui,Y., Fukui,S., Yokoyama,H., Ichikawa,N., Takasaki,K., Miura,H., Matsushita,S., Watanabe,Y., Sekiguchi,Y., Nakamura,K., Tanikawa,S., Hanada,S., Kamagata,Y., Fujita,N. and Kikuchi,H. (2006) Direct submission Genbank