ISGau8
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AP009153 | ND | Gemmatimonas aurantiaca | Gemmatimonas aurantiaca T-27 |
DNA section
IS Length : 1364 bp
Ends
IR Length : 25/49
IRL : GCGCGCAGCGCGCGCATTTCATTTGAGCGCCCGCTGCAGAAGCCAGCGTT
IRR : GCGACCAGCGCGCTCGCCGCCAAGCAAAGTGGGAGCGACCGCTGAGTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTCGGAA | CGAGGGAGCG | 0 |
DNA sequence
GCGCGCAGCGCGCGCATTTCATTTGAGCGCCCGCTGCAGAAGCCAGCGTTATGCGGCCTGGAGTCAGGGGGTCAGTGCAACACCATCCATCTTTCACCGC
ATGGAGGTGTGCATGGAACCCAGGAGCATCAGTCCGCGTGGCTTCACCTCGGAGCAGCGCGGCCTTCTATGGATGTGGCATCGCGAGGGCGTCTCGCGGC
GCGGGATCGCGGAACGGCTCGGCAAGCTGCCGGGCTCCGTCCACTTCATCATTCGGGAGGCGGGCGGCATCGCCCCGCGCCCGCGCGTCCGGTCGCCGCA
CCAGCTCTCCCTCGCAGATCGAGAGGCGATCGAGCGGGCGCTGGCGCGGGGCGCGAGCTTCCGGCTGATCGCGCGATGGCTCGGGCGCGCGCCGTCGACC
ATCTCGCGCGAAGTCGAGCGCCACGGCGGTCGCGACGTCTACTCTGCGGTGCGGGCCGACATCGCCGCGTGGGTCGACGCGCGGCGGCCGAAGCCCTGCC
GCCTGGCGACCCATCGGCCGCTCCGGCGGCTCGTCACGGCCAAGCTGCGCCTGCAGTGGTCCCCGCGCCAGATTAGTCGGTGGCTCCGTCGCACGGCGCC
GCAGACCCCGGAGCTGCATGTGTCGCACGAGACGATCTATCAGTCGCTCTACATTCAGTCGCGCAATGTCCTGCGGAAGGAGCTCACGCAGGAGCTGCGG
CGCCGGCGCGTCGTCCGCGTCGCGCGGACGGCGACCCGGAAGCGCCAAGGGCGCGGCCAGATCGTGGACGCGATCCCGATCAGCCAGCGGCCGCCCGAGG
TCGCCGATCGCGCCGTGCCGGGCCACTGGGAGGGCGATCTGATCGCCGGGCGGGACAACAGCTACATCGCCACGCTGGTCGAGCGCACCACTCGCTTCGT
CATTCTCGTGCGCGTCCCCAGCAAGGAGACGACGACCGTGATCCCGGCGCTGATCCGGCAGATCAGGCGGCTGCCGGCGCACCTGACGCGCTCGCTGACC
TGGGACCGCGGCACCGAGCTCGCGCACCACCGGGTCTTCTCCGTGGCGACCGGGGTGCAGGTCTACTTCTGCGACCCGCAGAGCCCCTGGCAGCGGGGGT
CGAACGAGAACACGAACGGCCTGCTGCGGCAGTACTTCCCGAAGGGCGTGGATCTCTCCACCTTCACGCAGCGGCAGTTGGACGCCGTCGCCGACCGCCT
GAACGGCCGGCCCCGCGAGACCCTCGACTGGCGGACGCCCGCCGAGATGATTCAGCAGGTGTTGCGTTGATTACCTGATTCCACCGGTCTGGACCTGAGA
GGATCTTCTGCGCTCTCACTCAGCGGTCGCTCCCACTTTGCTTGGCGGCGAGCGCGCTGGTCGC
ATGGAGGTGTGCATGGAACCCAGGAGCATCAGTCCGCGTGGCTTCACCTCGGAGCAGCGCGGCCTTCTATGGATGTGGCATCGCGAGGGCGTCTCGCGGC
GCGGGATCGCGGAACGGCTCGGCAAGCTGCCGGGCTCCGTCCACTTCATCATTCGGGAGGCGGGCGGCATCGCCCCGCGCCCGCGCGTCCGGTCGCCGCA
CCAGCTCTCCCTCGCAGATCGAGAGGCGATCGAGCGGGCGCTGGCGCGGGGCGCGAGCTTCCGGCTGATCGCGCGATGGCTCGGGCGCGCGCCGTCGACC
ATCTCGCGCGAAGTCGAGCGCCACGGCGGTCGCGACGTCTACTCTGCGGTGCGGGCCGACATCGCCGCGTGGGTCGACGCGCGGCGGCCGAAGCCCTGCC
GCCTGGCGACCCATCGGCCGCTCCGGCGGCTCGTCACGGCCAAGCTGCGCCTGCAGTGGTCCCCGCGCCAGATTAGTCGGTGGCTCCGTCGCACGGCGCC
GCAGACCCCGGAGCTGCATGTGTCGCACGAGACGATCTATCAGTCGCTCTACATTCAGTCGCGCAATGTCCTGCGGAAGGAGCTCACGCAGGAGCTGCGG
CGCCGGCGCGTCGTCCGCGTCGCGCGGACGGCGACCCGGAAGCGCCAAGGGCGCGGCCAGATCGTGGACGCGATCCCGATCAGCCAGCGGCCGCCCGAGG
TCGCCGATCGCGCCGTGCCGGGCCACTGGGAGGGCGATCTGATCGCCGGGCGGGACAACAGCTACATCGCCACGCTGGTCGAGCGCACCACTCGCTTCGT
CATTCTCGTGCGCGTCCCCAGCAAGGAGACGACGACCGTGATCCCGGCGCTGATCCGGCAGATCAGGCGGCTGCCGGCGCACCTGACGCGCTCGCTGACC
TGGGACCGCGGCACCGAGCTCGCGCACCACCGGGTCTTCTCCGTGGCGACCGGGGTGCAGGTCTACTTCTGCGACCCGCAGAGCCCCTGGCAGCGGGGGT
CGAACGAGAACACGAACGGCCTGCTGCGGCAGTACTTCCCGAAGGGCGTGGATCTCTCCACCTTCACGCAGCGGCAGTTGGACGCCGTCGCCGACCGCCT
GAACGGCCGGCCCCGCGAGACCCTCGACTGGCGGACGCCCGCCGAGATGATTCAGCAGGTGTTGCGTTGATTACCTGATTCCACCGGTCTGGACCTGAGA
GGATCTTCTGCGCTCTCACTCAGCGGTCGCTCCCACTTTGCTTGGCGGCGAGCGCGCTGGTCGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 101 | 1270 | + | No |
Chemistry : DDE
ORF sequence :
MEVCMEPRSISPRGFTSEQRGLLWMWHREGVSRRGIAERLGKLPGSVHFIIREAGGIAPRPRVRSPHQLSLADREAIERALARGASFRLIARWLGRAPST
ISREVERHGGRDVYSAVRADIAAWVDARRPKPCRLATHRPLRRLVTAKLRLQWSPRQISRWLRRTAPQTPELHVSHETIYQSLYIQSRNVLRKELTQELR
RRRVVRVARTATRKRQGRGQIVDAIPISQRPPEVADRAVPGHWEGDLIAGRDNSYIATLVERTTRFVILVRVPSKETTTVIPALIRQIRRLPAHLTRSLT
WDRGTELAHHRVFSVATGVQVYFCDPQSPWQRGSNENTNGLLRQYFPKGVDLSTFTQRQLDAVADRLNGRPRETLDWRTPAEMIQQVLR
ISREVERHGGRDVYSAVRADIAAWVDARRPKPCRLATHRPLRRLVTAKLRLQWSPRQISRWLRRTAPQTPELHVSHETIYQSLYIQSRNVLRKELTQELR
RRRVVRVARTATRKRQGRGQIVDAIPISQRPPEVADRAVPGHWEGDLIAGRDNSYIATLVERTTRFVILVRVPSKETTTVIPALIRQIRRLPAHLTRSLT
WDRGTELAHHRVFSVATGVQVYFCDPQSPWQRGSNENTNGLLRQYFPKGVDLSTFTQRQLDAVADRLNGRPRETLDWRTPAEMIQQVLR
Blast result :
Comments
ISGau8 is 71% aa similar to ISHar4.
References
1] Ichikawa, N. (2010) Direct submission
2] Oguchi,A., Ankai,A., Yashiro,I., Takahashi,M., Terui,Y., Fukui,S., Yokoyama,H., Ichikawa,N., Takasaki,K., Miura,H., Matsushita,S., Watanabe,Y., Sekiguchi,Y., Nakamura,K., Tanikawa,S., Hanada,S., Kamagata,Y., Fujita,N. and Kikuchi,H. (2006) Direct submission Genbank
2] Oguchi,A., Ankai,A., Yashiro,I., Takahashi,M., Terui,Y., Fukui,S., Yokoyama,H., Ichikawa,N., Takasaki,K., Miura,H., Matsushita,S., Watanabe,Y., Sekiguchi,Y., Nakamura,K., Tanikawa,S., Hanada,S., Kamagata,Y., Fujita,N. and Kikuchi,H. (2006) Direct submission Genbank