ISGau8

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AP009153 ND Gemmatimonas aurantiaca
Gemmatimonas aurantiaca T-27
DNA section
IS Length : 1364 bp

Ends


IR Length : 25/49

IRL : GCGCGCAGCGCGCGCATTTCATTTGAGCGCCCGCTGCAGAAGCCAGCGTT
IRR : GCGACCAGCGCGCTCGCCGCCAAGCAAAGTGGGAGCGACCGCTGAGTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTCGGAACGAGGGAGCG0

DNA sequence

GCGCGCAGCGCGCGCATTTCATTTGAGCGCCCGCTGCAGAAGCCAGCGTTATGCGGCCTGGAGTCAGGGGGTCAGTGCAACACCATCCATCTTTCACCGC
ATGGAGGTGTGCATGGAACCCAGGAGCATCAGTCCGCGTGGCTTCACCTCGGAGCAGCGCGGCCTTCTATGGATGTGGCATCGCGAGGGCGTCTCGCGGC
GCGGGATCGCGGAACGGCTCGGCAAGCTGCCGGGCTCCGTCCACTTCATCATTCGGGAGGCGGGCGGCATCGCCCCGCGCCCGCGCGTCCGGTCGCCGCA
CCAGCTCTCCCTCGCAGATCGAGAGGCGATCGAGCGGGCGCTGGCGCGGGGCGCGAGCTTCCGGCTGATCGCGCGATGGCTCGGGCGCGCGCCGTCGACC
ATCTCGCGCGAAGTCGAGCGCCACGGCGGTCGCGACGTCTACTCTGCGGTGCGGGCCGACATCGCCGCGTGGGTCGACGCGCGGCGGCCGAAGCCCTGCC
GCCTGGCGACCCATCGGCCGCTCCGGCGGCTCGTCACGGCCAAGCTGCGCCTGCAGTGGTCCCCGCGCCAGATTAGTCGGTGGCTCCGTCGCACGGCGCC
GCAGACCCCGGAGCTGCATGTGTCGCACGAGACGATCTATCAGTCGCTCTACATTCAGTCGCGCAATGTCCTGCGGAAGGAGCTCACGCAGGAGCTGCGG
CGCCGGCGCGTCGTCCGCGTCGCGCGGACGGCGACCCGGAAGCGCCAAGGGCGCGGCCAGATCGTGGACGCGATCCCGATCAGCCAGCGGCCGCCCGAGG
TCGCCGATCGCGCCGTGCCGGGCCACTGGGAGGGCGATCTGATCGCCGGGCGGGACAACAGCTACATCGCCACGCTGGTCGAGCGCACCACTCGCTTCGT
CATTCTCGTGCGCGTCCCCAGCAAGGAGACGACGACCGTGATCCCGGCGCTGATCCGGCAGATCAGGCGGCTGCCGGCGCACCTGACGCGCTCGCTGACC
TGGGACCGCGGCACCGAGCTCGCGCACCACCGGGTCTTCTCCGTGGCGACCGGGGTGCAGGTCTACTTCTGCGACCCGCAGAGCCCCTGGCAGCGGGGGT
CGAACGAGAACACGAACGGCCTGCTGCGGCAGTACTTCCCGAAGGGCGTGGATCTCTCCACCTTCACGCAGCGGCAGTTGGACGCCGTCGCCGACCGCCT
GAACGGCCGGCCCCGCGAGACCCTCGACTGGCGGACGCCCGCCGAGATGATTCAGCAGGTGTTGCGTTGATTACCTGATTCCACCGGTCTGGACCTGAGA
GGATCTTCTGCGCTCTCACTCAGCGGTCGCTCCCACTTTGCTTGGCGGCGAGCGCGCTGGTCGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1011270+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVCMEPRSISPRGFTSEQRGLLWMWHREGVSRRGIAERLGKLPGSVHFIIREAGGIAPRPRVRSPHQLSLADREAIERALARGASFRLIARWLGRAPST
ISREVERHGGRDVYSAVRADIAAWVDARRPKPCRLATHRPLRRLVTAKLRLQWSPRQISRWLRRTAPQTPELHVSHETIYQSLYIQSRNVLRKELTQELR
RRRVVRVARTATRKRQGRGQIVDAIPISQRPPEVADRAVPGHWEGDLIAGRDNSYIATLVERTTRFVILVRVPSKETTTVIPALIRQIRRLPAHLTRSLT
WDRGTELAHHRVFSVATGVQVYFCDPQSPWQRGSNENTNGLLRQYFPKGVDLSTFTQRQLDAVADRLNGRPRETLDWRTPAEMIQQVLR

 

Blast result :
Comments
ISGau8 is 71% aa similar to ISHar4.
References
1] Ichikawa, N. (2010) Direct submission

2] Oguchi,A., Ankai,A., Yashiro,I., Takahashi,M., Terui,Y., Fukui,S., Yokoyama,H., Ichikawa,N., Takasaki,K., Miura,H., Matsushita,S., Watanabe,Y., Sekiguchi,Y., Nakamura,K., Tanikawa,S., Hanada,S., Kamagata,Y., Fujita,N. and Kikuchi,H. (2006) Direct submission Genbank